RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 C8orf17Q9NRJ1 99 aa6.69□□□□□ -1.34
LSM3-201ENST00000306024 IGLV5-37A0A075B6J1 123 aa6.68□□□□□ -1.34
LSM3-201ENST00000306024 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.68□□□□□ -1.34
LSM3-201ENST00000306024 PRKDCP78527 4128 aaKnown RBP6.67□□□□□ -1.34
LSM3-201ENST00000306024 LINC00472Q9H8W2 130 aa6.66□□□□□ -1.34
LSM3-201ENST00000306024 KRTAP10-2P60368 255 aa6.66□□□□□ -1.34
LSM3-201ENST00000306024 MIR22HGQ0VDD5 57 aa6.66□□□□□ -1.34
LSM3-201ENST00000306024 MRPL34Q9BQ48 92 aaKnown RBP6.66□□□□□ -1.34
LSM3-201ENST00000306024 DNAH3Q8TD57 4116 aa6.65□□□□□ -1.34
LSM3-201ENST00000306024 IGLV8-61A0A075B6I0 122 aa6.65□□□□□ -1.35
LSM3-201ENST00000306024 UQCR11O14957 56 aa6.65□□□□□ -1.35
LSM3-201ENST00000306024 SPACA4Q8TDM5 124 aa6.62□□□□□ -1.35
LSM3-201ENST00000306024 PANO1I0J062 215 aa6.62□□□□□ -1.35
LSM3-201ENST00000306024 CSAG1Q6PB30 78 aa6.62□□□□□ -1.35
LSM3-201ENST00000306024 A0A1B0GVX0 72 aa6.61□□□□□ -1.35
LSM3-201ENST00000306024 PLA2G1BP04054 148 aaKnown RBP6.59□□□□□ -1.35
LSM3-201ENST00000306024 ZNF706Q9Y5V0 76 aaPredicted RBP6.59□□□□□ -1.35
LSM3-201ENST00000306024 CIRBP-AS1Q8TBR5 109 aa6.59□□□□□ -1.36
LSM3-201ENST00000306024 KRTAP10-1P60331 282 aa6.58□□□□□ -1.36
LSM3-201ENST00000306024 PSORS1C2Q9UIG4 136 aa6.58□□□□□ -1.36
LSM3-201ENST00000306024 SMR3BP02814 79 aaPredicted RBP6.57□□□□□ -1.36
LSM3-201ENST00000306024 KRTAP7-1Q8IUC3 87 aa6.57□□□□□ -1.36
LSM3-201ENST00000306024 SPINK1P00995 79 aa6.57□□□□□ -1.36
LSM3-201ENST00000306024 PLAC8Q9NZF1 115 aa6.56□□□□□ -1.36
LSM3-201ENST00000306024 PLECQ15149 4684 aaKnown RBP6.52□□□□□ -1.37
LSM3-201ENST00000306024 ZNF861PO60384 105 aa6.51□□□□□ -1.37
LSM3-201ENST00000306024 IGKV2D-30A0A075B6S6 120 aa6.5□□□□□ -1.37
LSM3-201ENST00000306024 IGKV2-30P06310 120 aa6.5□□□□□ -1.37
LSM3-201ENST00000306024 IGLV7-43P04211 117 aa6.5□□□□□ -1.37
LSM3-201ENST00000306024 ASB16-AS1Q495Z4 193 aa6.49□□□□□ -1.37
LSM3-201ENST00000306024 SPRR1BP22528 89 aa6.49□□□□□ -1.37
LSM3-201ENST00000306024 FAM229AH3BQW9 127 aa6.49□□□□□ -1.37
LSM3-201ENST00000306024 KRTAP11-1Q8IUC1 163 aa6.49□□□□□ -1.37
LSM3-201ENST00000306024 STARD9Q9P2P6 4700 aa6.48□□□□□ -1.37
LSM3-201ENST00000306024 SPATA8Q6RVD6 105 aa6.48□□□□□ -1.37
LSM3-201ENST00000306024 ANAPC11Q9NYG5 84 aa6.46□□□□□ -1.37
LSM3-201ENST00000306024 A0A087X002 238 aa6.44□□□□□ -1.38
LSM3-201ENST00000306024 NOTCH2NLQ7Z3S9 236 aa6.44□□□□□ -1.38
LSM3-201ENST00000306024 K7ERS5 55 aa6.44□□□□□ -1.38
LSM3-201ENST00000306024 Q5W150 140 aa6.43□□□□□ -1.38
LSM3-201ENST00000306024 DMAC1Q96GE9 116 aa6.41□□□□□ -1.38
LSM3-201ENST00000306024 CSMD3Q7Z407 3707 aa6.4□□□□□ -1.38
LSM3-201ENST00000306024 FLG2Q5D862 2391 aaPredicted RBP6.39□□□□□ -1.39
LSM3-201ENST00000306024 Q6ZSA8 131 aa6.39□□□□□ -1.39
LSM3-201ENST00000306024 Q96NJ1 140 aa6.39□□□□□ -1.39
LSM3-201ENST00000306024 VPS13DQ5THJ4 4388 aa6.38□□□□□ -1.39
LSM3-201ENST00000306024 SSBP3-AS1Q7Z2R9 100 aa6.37□□□□□ -1.39
LSM3-201ENST00000306024 SRRM2Q9UQ35 2752 aaKnown RBP6.36□□□□□ -1.39
LSM3-201ENST00000306024 TYMSOSQ8TAI1 123 aa6.36□□□□□ -1.39
LSM3-201ENST00000306024 A0A1B0GVY2 172 aa6.34□□□□□ -1.39
LSM3-201ENST00000306024 CRIPTQ9P021 101 aa6.33□□□□□ -1.4
LSM3-201ENST00000306024 DNAH10Q8IVF4 4471 aa6.33□□□□□ -1.4
LSM3-201ENST00000306024 DMBT1Q9UGM3 2413 aaPredicted RBP6.33□□□□□ -1.4
LSM3-201ENST00000306024 SPINT4Q6UDR6 99 aa6.32□□□□□ -1.4
LSM3-201ENST00000306024 KRTAP13-1Q8IUC0 172 aa6.32□□□□□ -1.4
LSM3-201ENST00000306024 LYSTQ99698 3801 aa6.31□□□□□ -1.4
LSM3-201ENST00000306024 DNAH1Q9P2D7 4330 aa6.31□□□□□ -1.4
LSM3-201ENST00000306024 Q5VSD8 79 aa6.31□□□□□ -1.4
LSM3-201ENST00000306024 Q8N1X5 172 aa6.3□□□□□ -1.4
LSM3-201ENST00000306024 KMT2AQ03164 3969 aa6.3□□□□□ -1.4
LSM3-201ENST00000306024 ALMS1Q8TCU4 4167 aa6.29□□□□□ -1.4
LSM3-201ENST00000306024 ROMO1P60602 79 aa6.29□□□□□ -1.4
LSM3-201ENST00000306024 DNAH7Q8WXX0 4024 aa6.28□□□□□ -1.4
LSM3-201ENST00000306024 KRTAP25-1Q3LHN0 102 aa6.28□□□□□ -1.4
LSM3-201ENST00000306024 DYNC2H1Q8NCM8 4307 aaKnown RBP6.27□□□□□ -1.41
LSM3-201ENST00000306024 LINC00483Q53H64 154 aa6.25□□□□□ -1.41
LSM3-201ENST00000306024 LINC00304Q8N9R0 145 aa6.25□□□□□ -1.41
LSM3-201ENST00000306024 A0A1B0GU33 70 aa6.21□□□□□ -1.41
LSM3-201ENST00000306024 DNAH11Q96DT5 4516 aa6.17□□□□□ -1.42
LSM3-201ENST00000306024 DNAH17Q9UFH2 4485 aa6.16□□□□□ -1.42
LSM3-201ENST00000306024 SACSQ9NZJ4 4579 aa6.16□□□□□ -1.42
LSM3-201ENST00000306024 J3QL48 77 aa6.16□□□□□ -1.42
LSM3-201ENST00000306024 KRTAP13-2Q52LG2 175 aa6.16□□□□□ -1.42
LSM3-201ENST00000306024 A8MUU9 505 aa6.15□□□□□ -1.42
LSM3-201ENST00000306024 KRTAP13-3Q3SY46 172 aa6.15□□□□□ -1.42
LSM3-201ENST00000306024 HYDINQ4G0P3 5121 aa6.14□□□□□ -1.43
LSM3-201ENST00000306024 KRTAP1-4P0C5Y4 121 aa6.13□□□□□ -1.43
LSM3-201ENST00000306024 DNAH2Q9P225 4427 aa6.13□□□□□ -1.43
LSM3-201ENST00000306024 KMT2CQ8NEZ4 4911 aaKnown RBP6.1□□□□□ -1.43
LSM3-201ENST00000306024 DNAH5Q8TE73 4624 aa6.1□□□□□ -1.43
LSM3-201ENST00000306024 H0YAA0 97 aa6.07□□□□□ -1.44
LSM3-201ENST00000306024 H1FX-AS1Q4G0G2 97 aa6.07□□□□□ -1.44
LSM3-201ENST00000306024 RYR2Q92736 4967 aa6.07□□□□□ -1.44
LSM3-201ENST00000306024 A0A0D9SG42 100 aa6.06□□□□□ -1.44
LSM3-201ENST00000306024 DYNC1H1Q14204 4646 aaKnown RBP6.06□□□□□ -1.44
LSM3-201ENST00000306024 LRP1BQ9NZR2 4599 aa6.05□□□□□ -1.44
LSM3-201ENST00000306024 NDUFAF8A1L188 74 aa6.05□□□□□ -1.44
LSM3-201ENST00000306024 DNAH6Q9C0G6 4158 aa6.05□□□□□ -1.44
LSM3-201ENST00000306024 C9orf92A6NGG3 77 aa6.04□□□□□ -1.44
LSM3-201ENST00000306024 HECTD4Q9Y4D8 3996 aa5.99□□□□□ -1.45
LSM3-201ENST00000306024 FAT1Q14517 4588 aa5.98□□□□□ -1.45
LSM3-201ENST00000306024 KRTAP10-4P60372 401 aaPredicted RBP5.98□□□□□ -1.45
LSM3-201ENST00000306024 P0C880 135 aa5.97□□□□□ -1.45
LSM3-201ENST00000306024 KRTAP16-1A8MUX0 517 aa5.96□□□□□ -1.45
LSM3-201ENST00000306024 FAT2Q9NYQ8 4349 aa5.96□□□□□ -1.46
LSM3-201ENST00000306024 PKHD1P08F94 4074 aa5.96□□□□□ -1.46
LSM3-201ENST00000306024 RPL37P61927 97 aaKnown RBP5.95□□□□□ -1.46
LSM3-201ENST00000306024 RPS29P62273 56 aaKnown RBP5.95□□□□□ -1.46
LSM3-201ENST00000306024 KIAA1109Q2LD37 5005 aa5.93□□□□□ -1.46
LSM3-201ENST00000306024 C20orf166-AS1Q96NR2 134 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 96.5 ms