RNA–Protein interactions for RNA: ENST00000302303.5

RFX3-201, Transcript of regulatory factor X3, humanhuman

TSL 1 (best) BASIC

Gene RFX3, Length 1,522 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-201ENST00000302303 IGKV4-1P06312 121 aa5.21□□□□□ -1.58
RFX3-201ENST00000302303 NREPQ16612 68 aa5.21□□□□□ -1.58
RFX3-201ENST00000302303 FAM240AA0A1B0GVK7 77 aa5.2□□□□□ -1.58
RFX3-201ENST00000302303 DSCR10P59022 87 aa5.2□□□□□ -1.58
RFX3-201ENST00000302303 NOTCH2NLQ7Z3S9 236 aa5.2□□□□□ -1.58
RFX3-201ENST00000302303 IGKV3D-7A0A0C4DH55 119 aa5.18□□□□□ -1.58
RFX3-201ENST00000302303 ACYP1P07311 99 aa5.18□□□□□ -1.58
RFX3-201ENST00000302303 C9orf92A6NGG3 77 aa5.17□□□□□ -1.58
RFX3-201ENST00000302303 J3KT08 172 aa5.17□□□□□ -1.58
RFX3-201ENST00000302303 A8MWP4 228 aa5.16□□□□□ -1.58
RFX3-201ENST00000302303 SIGMAR1Q99720 223 aa5.16□□□□□ -1.58
RFX3-201ENST00000302303 UBL5Q9BZL1 73 aa5.16□□□□□ -1.58
RFX3-201ENST00000302303 A0A1B0GVX0 72 aa5.15□□□□□ -1.58
RFX3-201ENST00000302303 KRTAP16-1A8MUX0 517 aa5.15□□□□□ -1.58
RFX3-201ENST00000302303 XP32Q5T750 250 aa5.15□□□□□ -1.58
RFX3-201ENST00000302303 K7EQZ3 153 aa5.14□□□□□ -1.59
RFX3-201ENST00000302303 BPY2O14599 106 aa5.14□□□□□ -1.59
RFX3-201ENST00000302303 PRR15Q8IV56 129 aa5.14□□□□□ -1.59
RFX3-201ENST00000302303 Q8N9L7 120 aa5.13□□□□□ -1.59
RFX3-201ENST00000302303 IGHV6-1A0A0B4J1U7 121 aa5.13□□□□□ -1.59
RFX3-201ENST00000302303 MUC17Q685J3 4493 aa5.12□□□□□ -1.59
RFX3-201ENST00000302303 LINC00313P59037 77 aa5.12□□□□□ -1.59
RFX3-201ENST00000302303 J3QR89 54 aa5.11□□□□□ -1.59
RFX3-201ENST00000302303 CXCL6P80162 114 aa5.11□□□□□ -1.59
RFX3-201ENST00000302303 UBR4Q5T4S7 5183 aa5.1□□□□□ -1.59
RFX3-201ENST00000302303 MMP24-AS1A0A0U1RRL7 71 aa5.1□□□□□ -1.59
RFX3-201ENST00000302303 C8orf17Q9NRJ1 99 aa5.1□□□□□ -1.59
RFX3-201ENST00000302303 C8orf87E5RJ46 101 aa5.09□□□□□ -1.59
RFX3-201ENST00000302303 NDUFB1O75438 58 aa5.09□□□□□ -1.59
RFX3-201ENST00000302303 LINC00643Q86TS7 51 aa5.09□□□□□ -1.59
RFX3-201ENST00000302303 C20orf166-AS1Q96NR2 134 aa5.09□□□□□ -1.59
RFX3-201ENST00000302303 A8MUU9 505 aa5.08□□□□□ -1.6
RFX3-201ENST00000302303 K7ERU9 68 aa5.08□□□□□ -1.6
RFX3-201ENST00000302303 RPL37P61927 97 aaKnown RBP5.07□□□□□ -1.6
RFX3-201ENST00000302303 Q75L30 129 aa5.07□□□□□ -1.6
RFX3-201ENST00000302303 Q8N9P0 234 aaPredicted RBP5.06□□□□□ -1.6
RFX3-201ENST00000302303 ATP5EP2Q5VTU8 51 aa5.05□□□□□ -1.6
RFX3-201ENST00000302303 KRTAP4-1Q9BYQ7 146 aa5.05□□□□□ -1.6
RFX3-201ENST00000302303 hDV103S1A0JD37 113 aa5.03□□□□□ -1.6
RFX3-201ENST00000302303 TMEM254Q8TBM7 123 aa5.02□□□□□ -1.61
RFX3-201ENST00000302303 MRPL34Q9BQ48 92 aaKnown RBP5.02□□□□□ -1.61
RFX3-201ENST00000302303 MUC2Q02817 5179 aa5.02□□□□□ -1.61
RFX3-201ENST00000302303 HCG22E2RYF7 251 aa5.02□□□□□ -1.61
RFX3-201ENST00000302303 MT-ATP8P03928 68 aa5.02□□□□□ -1.61
RFX3-201ENST00000302303 PCOTHQ58A44 107 aa5.02□□□□□ -1.61
RFX3-201ENST00000302303 WFDC13Q8IUB5 93 aa5.02□□□□□ -1.61
RFX3-201ENST00000302303 RNF213Q63HN8 5207 aa5.01□□□□□ -1.61
RFX3-201ENST00000302303 A0A087WVE0 104 aa5.01□□□□□ -1.61
RFX3-201ENST00000302303 CASC2Q6XLA1 102 aa5.01□□□□□ -1.61
RFX3-201ENST00000302303 SEC61BP60468 96 aaKnown RBP4.99□□□□□ -1.61
RFX3-201ENST00000302303 HIST1H4AP62805 103 aaKnown RBP4.98□□□□□ -1.61
RFX3-201ENST00000302303 Q5W150 140 aa4.97□□□□□ -1.61
RFX3-201ENST00000302303 ATP11AUNQ6ZP68 121 aa4.96□□□□□ -1.62
RFX3-201ENST00000302303 ZCCHC13Q8WW36 166 aaKnown RBP4.96□□□□□ -1.62
RFX3-201ENST00000302303 IMUPQ9GZP8 106 aa4.95□□□□□ -1.62
RFX3-201ENST00000302303 NDUFS5O43920 106 aa4.92□□□□□ -1.62
RFX3-201ENST00000302303 KRTAP23-1A1A580 65 aa4.91□□□□□ -1.62
RFX3-201ENST00000302303 KRTAP19-2Q3LHN2 52 aa4.91□□□□□ -1.62
RFX3-201ENST00000302303 OCR1Q9BZK8 76 aa4.9□□□□□ -1.63
RFX3-201ENST00000302303 KRTAP4-8Q9BYQ9 185 aa4.89□□□□□ -1.63
RFX3-201ENST00000302303 TP53AIP1Q9HCN2 124 aa4.88□□□□□ -1.63
RFX3-201ENST00000302303 HRES1P13985 223 aa4.87□□□□□ -1.63
RFX3-201ENST00000302303 PCP4P48539 62 aa4.87□□□□□ -1.63
RFX3-201ENST00000302303 SPINK7P58062 85 aa4.87□□□□□ -1.63
RFX3-201ENST00000302303 FAM236AA0A1B0GUQ0 79 aa4.86□□□□□ -1.63
RFX3-201ENST00000302303 FAM236BA0A1B0GV22 79 aa4.86□□□□□ -1.63
RFX3-201ENST00000302303 MPLKIPQ8TAP9 179 aa4.86□□□□□ -1.63
RFX3-201ENST00000302303 FAT4Q6V0I7 4981 aa4.84□□□□□ -1.63
RFX3-201ENST00000302303 UQCRQO14949 82 aa4.84□□□□□ -1.63
RFX3-201ENST00000302303 TRAV22A0A0B4J277 110 aa4.82□□□□□ -1.64
RFX3-201ENST00000302303 IGKV2-30P06310 120 aa4.82□□□□□ -1.64
RFX3-201ENST00000302303 IGKV2D-30A0A075B6S6 120 aa4.8□□□□□ -1.64
RFX3-201ENST00000302303 SCGB1A1P11684 91 aa4.8□□□□□ -1.64
RFX3-201ENST00000302303 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.79□□□□□ -1.64
RFX3-201ENST00000302303 H0Y9P7 68 aa4.79□□□□□ -1.64
RFX3-201ENST00000302303 C7orf65Q6ZTY9 151 aa4.79□□□□□ -1.64
RFX3-201ENST00000302303 CYP4F30PQ9H0H9 118 aa4.79□□□□□ -1.64
RFX3-201ENST00000302303 KRTAP19-4Q3LI73 84 aa4.78□□□□□ -1.64
RFX3-201ENST00000302303 TRAV7A0A075B6U4 112 aa4.77□□□□□ -1.65
RFX3-201ENST00000302303 C5orf47Q569G3 176 aa4.77□□□□□ -1.65
RFX3-201ENST00000302303 KRTAP9-2Q9BYQ4 174 aa4.77□□□□□ -1.65
RFX3-201ENST00000302303 FLGP20930 4061 aaPredicted RBP4.77□□□□□ -1.65
RFX3-201ENST00000302303 ATOX1O00244 68 aa4.76□□□□□ -1.65
RFX3-201ENST00000302303 LINC00208Q96KT6 92 aa4.76□□□□□ -1.65
RFX3-201ENST00000302303 KRTAP9-6A0A140TA67 174 aa4.75□□□□□ -1.65
RFX3-201ENST00000302303 LOC101927531A0A1B0GV80 90 aa4.75□□□□□ -1.65
RFX3-201ENST00000302303 SMIM20Q8N5G0 67 aa4.75□□□□□ -1.65
RFX3-201ENST00000302303 C1orf64Q8NEQ6 169 aa4.75□□□□□ -1.65
RFX3-201ENST00000302303 KRTAP3-1Q9BYR8 98 aa4.75□□□□□ -1.65
RFX3-201ENST00000302303 MT1HP80294 61 aa4.73□□□□□ -1.65
RFX3-201ENST00000302303 KLKP1Q107X0 134 aa4.73□□□□□ -1.65
RFX3-201ENST00000302303 C4orf26Q17RF5 130 aa4.73□□□□□ -1.65
RFX3-201ENST00000302303 SERP2Q8N6R1 65 aa4.72□□□□□ -1.65
RFX3-201ENST00000302303 A0A0U1RQV1 116 aa4.72□□□□□ -1.65
RFX3-201ENST00000302303 H3BPC8 53 aa4.72□□□□□ -1.65
RFX3-201ENST00000302303 MP68P56378 58 aa4.72□□□□□ -1.65
RFX3-201ENST00000302303 RBM12B-AS1Q9P1G2 102 aa4.71□□□□□ -1.66
RFX3-201ENST00000302303 COX6B2Q6YFQ2 88 aa4.7□□□□□ -1.66
RFX3-201ENST00000302303 COX7CP15954 63 aa4.67□□□□□ -1.66
RFX3-201ENST00000302303 SNURFQ9Y675 71 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms