RNA–Protein interactions for RNA: ENST00000298966.6

SMCO4-201, Transcript of single-pass membrane protein with coiled-coil domains 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMCO4, Length 1,104 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4-201ENST00000298966 SCGB1A1P11684 91 aa12.04□□□□□ -0.48
SMCO4-201ENST00000298966 ASB16-AS1Q495Z4 193 aa12.03□□□□□ -0.48
SMCO4-201ENST00000298966 LINC00304Q8N9R0 145 aa12.03□□□□□ -0.48
SMCO4-201ENST00000298966 BPY2O14599 106 aa12.02□□□□□ -0.49
SMCO4-201ENST00000298966 HRCT1Q6UXD1 115 aa12.02□□□□□ -0.49
SMCO4-201ENST00000298966 J3KT08 172 aa12□□□□□ -0.49
SMCO4-201ENST00000298966 RETNLBQ9BQ08 111 aa11.97□□□□□ -0.49
SMCO4-201ENST00000298966 LINC00472Q9H8W2 130 aa11.97□□□□□ -0.49
SMCO4-201ENST00000298966 TPRXLQ17RH7 258 aa11.95□□□□□ -0.5
SMCO4-201ENST00000298966 HIST1H4AP62805 103 aaKnown RBP11.93□□□□□ -0.5
SMCO4-201ENST00000298966 DSCR10P59022 87 aa11.91□□□□□ -0.5
SMCO4-201ENST00000298966 IGLV7-46A0A075B6I9 117 aa11.9□□□□□ -0.5
SMCO4-201ENST00000298966 Q96NJ1 140 aa11.89□□□□□ -0.51
SMCO4-201ENST00000298966 FSIP2Q5CZC0 6907 aa11.89□□□□□ -0.51
SMCO4-201ENST00000298966 IGKV4-1P06312 121 aa11.88□□□□□ -0.51
SMCO4-201ENST00000298966 A0A087WVE0 104 aa11.87□□□□□ -0.51
SMCO4-201ENST00000298966 CRCT1Q9UGL9 99 aa11.86□□□□□ -0.51
SMCO4-201ENST00000298966 FAM236AA0A1B0GUQ0 79 aa11.85□□□□□ -0.51
SMCO4-201ENST00000298966 FAM236BA0A1B0GV22 79 aa11.85□□□□□ -0.51
SMCO4-201ENST00000298966 NDUFB1O75438 58 aa11.85□□□□□ -0.51
SMCO4-201ENST00000298966 DEFB116Q30KQ4 102 aa11.85□□□□□ -0.51
SMCO4-201ENST00000298966 A8MWP4 228 aa11.84□□□□□ -0.51
SMCO4-201ENST00000298966 Q8N9L7 120 aa11.84□□□□□ -0.51
SMCO4-201ENST00000298966 K7EQZ3 153 aa11.82□□□□□ -0.52
SMCO4-201ENST00000298966 KRTAP3-3Q9BYR6 98 aa11.82□□□□□ -0.52
SMCO4-201ENST00000298966 KRTAP3-2Q9BYR7 98 aa11.82□□□□□ -0.52
SMCO4-201ENST00000298966 C1orf195Q5TG92 126 aa11.8□□□□□ -0.52
SMCO4-201ENST00000298966 PRR15Q8IV56 129 aa11.78□□□□□ -0.52
SMCO4-201ENST00000298966 ATOX1O00244 68 aa11.75□□□□□ -0.53
SMCO4-201ENST00000298966 A0A1B0GVX0 72 aa11.73□□□□□ -0.53
SMCO4-201ENST00000298966 HCG22E2RYF7 251 aa11.7□□□□□ -0.54
SMCO4-201ENST00000298966 C8orf87E5RJ46 101 aa11.7□□□□□ -0.54
SMCO4-201ENST00000298966 ANAPC13Q9BS18 74 aa11.69□□□□□ -0.54
SMCO4-201ENST00000298966 PCP4P48539 62 aa11.68□□□□□ -0.54
SMCO4-201ENST00000298966 FP248Q71RG6 208 aaPredicted RBP11.67□□□□□ -0.54
SMCO4-201ENST00000298966 SMIM20Q8N5G0 67 aa11.66□□□□□ -0.54
SMCO4-201ENST00000298966 IGHV6-1A0A0B4J1U7 121 aa11.64□□□□□ -0.55
SMCO4-201ENST00000298966 MMP24-AS1A0A0U1RRL7 71 aa11.64□□□□□ -0.55
SMCO4-201ENST00000298966 C8orf17Q9NRJ1 99 aa11.64□□□□□ -0.55
SMCO4-201ENST00000298966 CASC2Q6XLA1 102 aa11.62□□□□□ -0.55
SMCO4-201ENST00000298966 SEC61BP60468 96 aaKnown RBP11.61□□□□□ -0.55
SMCO4-201ENST00000298966 KRTAP13-3Q3SY46 172 aa11.61□□□□□ -0.55
SMCO4-201ENST00000298966 KRTAP4-1Q9BYQ7 146 aa11.61□□□□□ -0.55
SMCO4-201ENST00000298966 LINC00313P59037 77 aa11.59□□□□□ -0.55
SMCO4-201ENST00000298966 WFDC13Q8IUB5 93 aa11.59□□□□□ -0.55
SMCO4-201ENST00000298966 SERP2Q8N6R1 65 aa11.59□□□□□ -0.55
SMCO4-201ENST00000298966 TRAV7A0A075B6U4 112 aa11.58□□□□□ -0.56
SMCO4-201ENST00000298966 hDV103S1A0JD37 113 aa11.57□□□□□ -0.56
SMCO4-201ENST00000298966 TMEM254Q8TBM7 123 aa11.57□□□□□ -0.56
SMCO4-201ENST00000298966 OCR1Q9BZK8 76 aa11.55□□□□□ -0.56
SMCO4-201ENST00000298966 COX7CP15954 63 aa11.53□□□□□ -0.56
SMCO4-201ENST00000298966 MRPL34Q9BQ48 92 aaKnown RBP11.52□□□□□ -0.57
SMCO4-201ENST00000298966 UQCRQO14949 82 aa11.5□□□□□ -0.57
SMCO4-201ENST00000298966 NOTCH2NLQ7Z3S9 236 aa11.5□□□□□ -0.57
SMCO4-201ENST00000298966 TP53AIP1Q9HCN2 124 aa11.46□□□□□ -0.57
SMCO4-201ENST00000298966 LCE2CQ5TA81 110 aa11.43□□□□□ -0.58
SMCO4-201ENST00000298966 KRTAP16-1A8MUX0 517 aa11.42□□□□□ -0.58
SMCO4-201ENST00000298966 Q8N9P0 234 aaPredicted RBP11.42□□□□□ -0.58
SMCO4-201ENST00000298966 CCDC179H3BU77 68 aa11.41□□□□□ -0.58
SMCO4-201ENST00000298966 XP32Q5T750 250 aa11.38□□□□□ -0.59
SMCO4-201ENST00000298966 C5orf47Q569G3 176 aa11.37□□□□□ -0.59
SMCO4-201ENST00000298966 NDUFS5O43920 106 aa11.36□□□□□ -0.59
SMCO4-201ENST00000298966 MT1HP80294 61 aa11.36□□□□□ -0.59
SMCO4-201ENST00000298966 C9orf92A6NGG3 77 aa11.33□□□□□ -0.6
SMCO4-201ENST00000298966 KRTAP19-2Q3LHN2 52 aa11.32□□□□□ -0.6
SMCO4-201ENST00000298966 C20orf197Q8N268 126 aa11.32□□□□□ -0.6
SMCO4-201ENST00000298966 C20orf166-AS1Q96NR2 134 aa11.32□□□□□ -0.6
SMCO4-201ENST00000298966 A8MUU9 505 aa11.3□□□□□ -0.6
SMCO4-201ENST00000298966 KLKP1Q107X0 134 aa11.3□□□□□ -0.6
SMCO4-201ENST00000298966 TRAV22A0A0B4J277 110 aa11.28□□□□□ -0.6
SMCO4-201ENST00000298966 H3BPC8 53 aa11.28□□□□□ -0.6
SMCO4-201ENST00000298966 MP68P56378 58 aa11.28□□□□□ -0.6
SMCO4-201ENST00000298966 H0Y9P7 68 aa11.27□□□□□ -0.61
SMCO4-201ENST00000298966 Q75L30 129 aa11.27□□□□□ -0.61
SMCO4-201ENST00000298966 LORP23490 312 aaPredicted RBP11.26□□□□□ -0.61
SMCO4-201ENST00000298966 KRTAP10-6P60371 365 aaPredicted RBP11.25□□□□□ -0.61
SMCO4-201ENST00000298966 ZCCHC13Q8WW36 166 aaKnown RBP11.21□□□□□ -0.61
SMCO4-201ENST00000298966 PCOTHQ58A44 107 aa11.2□□□□□ -0.62
SMCO4-201ENST00000298966 SNURFQ9Y675 71 aa11.2□□□□□ -0.62
SMCO4-201ENST00000298966 NDUFC1O43677 76 aa11.19□□□□□ -0.62
SMCO4-201ENST00000298966 M0R2T5 61 aa11.17□□□□□ -0.62
SMCO4-201ENST00000298966 RPL37P61927 97 aaKnown RBP11.17□□□□□ -0.62
SMCO4-201ENST00000298966 LINC00208Q96KT6 92 aa11.17□□□□□ -0.62
SMCO4-201ENST00000298966 CYSTM1Q9H1C7 97 aa11.17□□□□□ -0.62
SMCO4-201ENST00000298966 Q5W150 140 aa11.16□□□□□ -0.62
SMCO4-201ENST00000298966 KRTAP9-7A8MTY7 169 aa11.14□□□□□ -0.63
SMCO4-201ENST00000298966 C1orf64Q8NEQ6 169 aa11.14□□□□□ -0.63
SMCO4-201ENST00000298966 LOC101927531A0A1B0GV80 90 aa11.12□□□□□ -0.63
SMCO4-201ENST00000298966 ATP11AUNQ6ZP68 121 aa11.11□□□□□ -0.63
SMCO4-201ENST00000298966 H7BZZ5 65 aa11.1□□□□□ -0.63
SMCO4-201ENST00000298966 KRTAP9-1A8MXZ3 250 aaPredicted RBP11.06□□□□□ -0.64
SMCO4-201ENST00000298966 TMEM258P61165 79 aa11.06□□□□□ -0.64
SMCO4-201ENST00000298966 COX6B2Q6YFQ2 88 aa11.05□□□□□ -0.64
SMCO4-201ENST00000298966 IGKV2-30P06310 120 aa11.02□□□□□ -0.65
SMCO4-201ENST00000298966 FLGP20930 4061 aaPredicted RBP11.02□□□□□ -0.65
SMCO4-201ENST00000298966 CYP4F30PQ9H0H9 118 aa11□□□□□ -0.65
SMCO4-201ENST00000298966 C7orf65Q6ZTY9 151 aa10.99□□□□□ -0.65
SMCO4-201ENST00000298966 ATP5EP56381 51 aaPredicted RBP10.96□□□□□ -0.65
SMCO4-201ENST00000298966 FAM236DA0A1B0GTK5 79 aa10.93□□□□□ -0.66
SMCO4-201ENST00000298966 FAM236CP0DP71 79 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms