RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 PRR4Q16378 134 aa9.28□□□□□ -0.92
LSM6-201ENST00000296581 CHKB-CPT1BH3BT56 60 aa9.28□□□□□ -0.92
LSM6-201ENST00000296581 SPTSSBQ8NFR3 76 aa9.28□□□□□ -0.92
LSM6-201ENST00000296581 A6NN06 94 aa9.26□□□□□ -0.93
LSM6-201ENST00000296581 ATP11AUNQ6ZP68 121 aa9.26□□□□□ -0.93
LSM6-201ENST00000296581 RYR3Q15413 4870 aa9.25□□□□□ -0.93
LSM6-201ENST00000296581 MOBPQ13875 183 aa9.25□□□□□ -0.93
LSM6-201ENST00000296581 VPS13BQ7Z7G8 4022 aa9.24□□□□□ -0.93
LSM6-201ENST00000296581 HCG22E2RYF7 251 aa9.24□□□□□ -0.93
LSM6-201ENST00000296581 A0A087WSZ3 146 aa9.24□□□□□ -0.93
LSM6-201ENST00000296581 APOBP04114 4563 aaKnown RBP9.24□□□□□ -0.93
LSM6-201ENST00000296581 LCA10Q71F78 164 aa9.21□□□□□ -0.93
LSM6-201ENST00000296581 LIMD2Q9BT23 127 aa9.21□□□□□ -0.93
LSM6-201ENST00000296581 Q8N9P0 234 aaPredicted RBP9.21□□□□□ -0.94
LSM6-201ENST00000296581 SMR3BP02814 79 aaPredicted RBP9.2□□□□□ -0.94
LSM6-201ENST00000296581 PRR15LQ9BU68 103 aa9.2□□□□□ -0.94
LSM6-201ENST00000296581 KRTAP1-4P0C5Y4 121 aa9.19□□□□□ -0.94
LSM6-201ENST00000296581 NDUFB1O75438 58 aa9.18□□□□□ -0.94
LSM6-201ENST00000296581 SPINK6Q6UWN8 80 aa9.18□□□□□ -0.94
LSM6-201ENST00000296581 C7orf65Q6ZTY9 151 aa9.18□□□□□ -0.94
LSM6-201ENST00000296581 C8orf87E5RJ46 101 aa9.17□□□□□ -0.94
LSM6-201ENST00000296581 SSBP3-AS1Q7Z2R9 100 aa9.17□□□□□ -0.94
LSM6-201ENST00000296581 A0A087X002 238 aa9.16□□□□□ -0.94
LSM6-201ENST00000296581 KRTAP10-4P60372 401 aaPredicted RBP9.16□□□□□ -0.94
LSM6-201ENST00000296581 Q75L30 129 aa9.16□□□□□ -0.94
LSM6-201ENST00000296581 KRTAP13-2Q52LG2 175 aa9.15□□□□□ -0.94
LSM6-201ENST00000296581 A6NED7 52 aa9.14□□□□□ -0.95
LSM6-201ENST00000296581 DSCR10P59022 87 aa9.14□□□□□ -0.95
LSM6-201ENST00000296581 LINC00472Q9H8W2 130 aa9.13□□□□□ -0.95
LSM6-201ENST00000296581 LINC00208Q96KT6 92 aa9.12□□□□□ -0.95
LSM6-201ENST00000296581 CDC42SE1Q9NRR8 79 aa9.11□□□□□ -0.95
LSM6-201ENST00000296581 PLA2G1BP04054 148 aaKnown RBP9.1□□□□□ -0.95
LSM6-201ENST00000296581 LOC101927531A0A1B0GV80 90 aa9.09□□□□□ -0.95
LSM6-201ENST00000296581 CDK2AP2O75956 126 aa9.09□□□□□ -0.95
LSM6-201ENST00000296581 DEFB116Q30KQ4 102 aa9.09□□□□□ -0.95
LSM6-201ENST00000296581 FAT1Q14517 4588 aa9.08□□□□□ -0.96
LSM6-201ENST00000296581 H3BS24 57 aa9.07□□□□□ -0.96
LSM6-201ENST00000296581 K7EQZ3 153 aa9.07□□□□□ -0.96
LSM6-201ENST00000296581 Q96NJ1 140 aa9.07□□□□□ -0.96
LSM6-201ENST00000296581 SPANXA2-OT1Q8N9U9 137 aa9.07□□□□□ -0.96
LSM6-201ENST00000296581 MP68P56378 58 aa9.05□□□□□ -0.96
LSM6-201ENST00000296581 FAM229AH3BQW9 127 aa9.02□□□□□ -0.96
LSM6-201ENST00000296581 A8MWP4 228 aa9.02□□□□□ -0.97
LSM6-201ENST00000296581 TYMSOSQ8TAI1 123 aa9.02□□□□□ -0.97
LSM6-201ENST00000296581 RYR1P21817 5038 aa9.01□□□□□ -0.97
LSM6-201ENST00000296581 ASB16-AS1Q495Z4 193 aa9.01□□□□□ -0.97
LSM6-201ENST00000296581 PRR26Q8N8Z3 221 aa9□□□□□ -0.97
LSM6-201ENST00000296581 HSPG2P98160 4391 aa8.98□□□□□ -0.97
LSM6-201ENST00000296581 PKHD1L1Q86WI1 4243 aa8.98□□□□□ -0.97
LSM6-201ENST00000296581 Q5VSD8 79 aa8.97□□□□□ -0.97
LSM6-201ENST00000296581 COA5Q86WW8 74 aa8.96□□□□□ -0.98
LSM6-201ENST00000296581 H3BPC8 53 aa8.93□□□□□ -0.98
LSM6-201ENST00000296581 SPINK1P00995 79 aa8.93□□□□□ -0.98
LSM6-201ENST00000296581 WFDC13Q8IUB5 93 aa8.93□□□□□ -0.98
LSM6-201ENST00000296581 H0Y9P7 68 aa8.93□□□□□ -0.98
LSM6-201ENST00000296581 EPPK1P58107 5090 aaKnown RBP8.92□□□□□ -0.98
LSM6-201ENST00000296581 LINC00313P59037 77 aa8.92□□□□□ -0.98
LSM6-201ENST00000296581 LINC00304Q8N9R0 145 aa8.92□□□□□ -0.98
LSM6-201ENST00000296581 KRTAP29-1A8MX34 341 aaPredicted RBP8.91□□□□□ -0.98
LSM6-201ENST00000296581 LINC01558Q9Y6Z2 57 aa8.91□□□□□ -0.98
LSM6-201ENST00000296581 A0A1B0GVX0 72 aa8.91□□□□□ -0.98
LSM6-201ENST00000296581 SPAG11AQ6PDA7 123 aa8.91□□□□□ -0.98
LSM6-201ENST00000296581 KRTAP17-1Q9BYP8 105 aa8.91□□□□□ -0.98
LSM6-201ENST00000296581 RPS29P62273 56 aaKnown RBP8.9□□□□□ -0.98
LSM6-201ENST00000296581 MMP24-AS1A0A0U1RRL7 71 aa8.89□□□□□ -0.99
LSM6-201ENST00000296581 PRAC1Q96KF2 57 aa8.89□□□□□ -0.99
LSM6-201ENST00000296581 KIAA1109Q2LD37 5005 aa8.89□□□□□ -0.99
LSM6-201ENST00000296581 SPINK7P58062 85 aa8.88□□□□□ -0.99
LSM6-201ENST00000296581 CASC2Q6XLA1 102 aa8.88□□□□□ -0.99
LSM6-201ENST00000296581 LINC01554Q52M75 96 aa8.87□□□□□ -0.99
LSM6-201ENST00000296581 C8orf17Q9NRJ1 99 aa8.87□□□□□ -0.99
LSM6-201ENST00000296581 IGHV6-1A0A0B4J1U7 121 aa8.86□□□□□ -0.99
LSM6-201ENST00000296581 Q8N1X5 172 aa8.86□□□□□ -0.99
LSM6-201ENST00000296581 IGLV7-46A0A075B6I9 117 aa8.84□□□□□ -0.99
LSM6-201ENST00000296581 NOTCH2NLQ7Z3S9 236 aa8.81□□□□□ -1
LSM6-201ENST00000296581 ADM2Q7Z4H4 148 aa8.8□□□□□ -1
LSM6-201ENST00000296581 KRTAP10-8P60410 259 aa8.79□□□□□ -1
LSM6-201ENST00000296581 MRPL34Q9BQ48 92 aaKnown RBP8.75□□□□□ -1.01
LSM6-201ENST00000296581 LRP1Q07954 4544 aaKnown RBP8.74□□□□□ -1.01
LSM6-201ENST00000296581 TNXBP22105 4242 aa8.72□□□□□ -1.01
LSM6-201ENST00000296581 FAT3Q8TDW7 4589 aa8.72□□□□□ -1.01
LSM6-201ENST00000296581 PCOTHQ58A44 107 aa8.71□□□□□ -1.02
LSM6-201ENST00000296581 FLG2Q5D862 2391 aaPredicted RBP8.71□□□□□ -1.02
LSM6-201ENST00000296581 TP53AIP1Q9HCN2 124 aa8.7□□□□□ -1.02
LSM6-201ENST00000296581 KRTAP16-1A8MUX0 517 aa8.68□□□□□ -1.02
LSM6-201ENST00000296581 HRES1P13985 223 aa8.67□□□□□ -1.02
LSM6-201ENST00000296581 MT1HL1P0DM35 61 aa8.66□□□□□ -1.02
LSM6-201ENST00000296581 RETNLBQ9BQ08 111 aa8.63□□□□□ -1.03
LSM6-201ENST00000296581 KRTAP4-5Q9BYR2 181 aa8.63□□□□□ -1.03
LSM6-201ENST00000296581 BIRC6Q9NR09 4857 aa8.61□□□□□ -1.03
LSM6-201ENST00000296581 MYCBP2O75592 4640 aa8.59□□□□□ -1.03
LSM6-201ENST00000296581 KRTAP13-3Q3SY46 172 aa8.57□□□□□ -1.04
LSM6-201ENST00000296581 DMBT1Q9UGM3 2413 aaPredicted RBP8.56□□□□□ -1.04
LSM6-201ENST00000296581 Q5W150 140 aa8.55□□□□□ -1.04
LSM6-201ENST00000296581 CSAG1Q6PB30 78 aa8.53□□□□□ -1.04
LSM6-201ENST00000296581 HERC2O95714 4834 aa8.52□□□□□ -1.05
LSM6-201ENST00000296581 C9orf92A6NGG3 77 aa8.51□□□□□ -1.05
LSM6-201ENST00000296581 SPATA8Q6RVD6 105 aa8.5□□□□□ -1.05
LSM6-201ENST00000296581 C20orf166-AS1Q96NR2 134 aa8.49□□□□□ -1.05
LSM6-201ENST00000296581 A8MUU9 505 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 163.5 ms