RNA–Protein interactions for RNA: ENST00000640653.1

VEGFA-232, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,170 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-232ENST00000640653 Q6JHZ5 121 aa13.71□□□□□ -0.21
VEGFA-232ENST00000640653 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP13.71□□□□□ -0.21
VEGFA-232ENST00000640653 PCOTHQ58A44 107 aa13.68□□□□□ -0.22
VEGFA-232ENST00000640653 KRTAP9-2Q9BYQ4 174 aa13.68□□□□□ -0.22
VEGFA-232ENST00000640653 IGLV8-61A0A075B6I0 122 aa13.67□□□□□ -0.22
VEGFA-232ENST00000640653 PPDPFLQ8WWR9 84 aa13.67□□□□□ -0.22
VEGFA-232ENST00000640653 C14orf144Q96I85 54 aa13.67□□□□□ -0.22
VEGFA-232ENST00000640653 CLEC2BQ92478 149 aa13.66□□□□□ -0.22
VEGFA-232ENST00000640653 PAM16Q9Y3D7 125 aa13.66□□□□□ -0.22
VEGFA-232ENST00000640653 SPATA45Q537H7 98 aa13.65□□□□□ -0.22
VEGFA-232ENST00000640653 RAB37Q96AX2 223 aa13.65□□□□□ -0.22
VEGFA-232ENST00000640653 HIGD1BQ9P298 99 aa13.65□□□□□ -0.22
VEGFA-232ENST00000640653 CFC1BP0CG36 223 aa13.64□□□□□ -0.23
VEGFA-232ENST00000640653 CFC1P0CG37 223 aa13.64□□□□□ -0.23
VEGFA-232ENST00000640653 OCIAD2Q56VL3 154 aa13.64□□□□□ -0.23
VEGFA-232ENST00000640653 IGFL1Q6UW32 110 aa13.63□□□□□ -0.23
VEGFA-232ENST00000640653 VAMP8Q9BV40 100 aa13.62□□□□□ -0.23
VEGFA-232ENST00000640653 SNHG12Q9BXW3 62 aa13.62□□□□□ -0.23
VEGFA-232ENST00000640653 TRBV7-7A0A0K0K1E9 115 aa13.6□□□□□ -0.23
VEGFA-232ENST00000640653 SNCGO76070 127 aa13.6□□□□□ -0.23
VEGFA-232ENST00000640653 A0A0B4J2C4 111 aa13.59□□□□□ -0.23
VEGFA-232ENST00000640653 H0YGX0 51 aa13.56□□□□□ -0.24
VEGFA-232ENST00000640653 C2orf91Q6ZV80 131 aa13.56□□□□□ -0.24
VEGFA-232ENST00000640653 RPL37P61927 97 aaKnown RBP13.55□□□□□ -0.24
VEGFA-232ENST00000640653 TMEM238LA0A1B0GVL6 79 aa13.51□□□□□ -0.25
VEGFA-232ENST00000640653 A6NJY4 79 aa13.51□□□□□ -0.25
VEGFA-232ENST00000640653 H3BUT2 72 aa13.51□□□□□ -0.25
VEGFA-232ENST00000640653 CEND1Q8N111 149 aa13.51□□□□□ -0.25
VEGFA-232ENST00000640653 LCE2CQ5TA81 110 aa13.48□□□□□ -0.25
VEGFA-232ENST00000640653 FAM218AQ96MZ4 157 aa13.48□□□□□ -0.25
VEGFA-232ENST00000640653 PRO1854Q9UHT4 67 aa13.47□□□□□ -0.25
VEGFA-232ENST00000640653 KRTAP19-2Q3LHN2 52 aa13.46□□□□□ -0.25
VEGFA-232ENST00000640653 A0A1B0GX51 115 aa13.45□□□□□ -0.26
VEGFA-232ENST00000640653 GHRHP01286 108 aa13.45□□□□□ -0.26
VEGFA-232ENST00000640653 LST1O00453 97 aa13.44□□□□□ -0.26
VEGFA-232ENST00000640653 NDUFV3P56181 108 aaKnown RBP13.44□□□□□ -0.26
VEGFA-232ENST00000640653 Q6Q795 121 aa13.43□□□□□ -0.26
VEGFA-232ENST00000640653 SS18L2Q9UHA2 77 aa13.43□□□□□ -0.26
VEGFA-232ENST00000640653 FXYD2P54710 66 aa13.41□□□□□ -0.26
VEGFA-232ENST00000640653 TEN1Q86WV5 123 aa13.4□□□□□ -0.26
VEGFA-232ENST00000640653 OBSCN-AS1Q96MR7 158 aa13.38□□□□□ -0.27
VEGFA-232ENST00000640653 FABP2P12104 132 aa13.37□□□□□ -0.27
VEGFA-232ENST00000640653 H3BMG7 143 aa13.36□□□□□ -0.27
VEGFA-232ENST00000640653 TRIAP1O43715 76 aa13.35□□□□□ -0.27
VEGFA-232ENST00000640653 MT1HP80294 61 aa13.35□□□□□ -0.27
VEGFA-232ENST00000640653 PYY3Q5JQD4 70 aa13.34□□□□□ -0.27
VEGFA-232ENST00000640653 HSD52Q0P140 79 aa13.33□□□□□ -0.28
VEGFA-232ENST00000640653 Q75L30 129 aa13.32□□□□□ -0.28
VEGFA-232ENST00000640653 A0A087WSZ3 146 aa13.3□□□□□ -0.28
VEGFA-232ENST00000640653 ATP11AUNQ6ZP68 121 aa13.3□□□□□ -0.28
VEGFA-232ENST00000640653 DNAL4O96015 105 aa13.29□□□□□ -0.28
VEGFA-232ENST00000640653 PSMB2P49721 201 aa13.28□□□□□ -0.28
VEGFA-232ENST00000640653 H3BQ85 93 aa13.26□□□□□ -0.29
VEGFA-232ENST00000640653 LCE2DQ5TA82 110 aaPredicted RBP13.26□□□□□ -0.29
VEGFA-232ENST00000640653 COX6B2Q6YFQ2 88 aa13.26□□□□□ -0.29
VEGFA-232ENST00000640653 Q96NJ1 140 aa13.26□□□□□ -0.29
VEGFA-232ENST00000640653 ORMDL1Q9P0S3 153 aa13.25□□□□□ -0.29
VEGFA-232ENST00000640653 KRTAP9-6A0A140TA67 174 aa13.24□□□□□ -0.29
VEGFA-232ENST00000640653 K7ERJ3 54 aa13.24□□□□□ -0.29
VEGFA-232ENST00000640653 COX6CP09669 75 aa13.24□□□□□ -0.29
VEGFA-232ENST00000640653 A0A1W2PNM2 257 aa13.21□□□□□ -0.29
VEGFA-232ENST00000640653 UQCR10Q9UDW1 63 aa13.21□□□□□ -0.29
VEGFA-232ENST00000640653 TMEM256-PLSCR3K7ERE1 68 aa13.19□□□□□ -0.3
VEGFA-232ENST00000640653 ANKRD29Q8N6D5 301 aa13.19□□□□□ -0.3
VEGFA-232ENST00000640653 TMA7Q9Y2S6 64 aaKnown RBP13.18□□□□□ -0.3
VEGFA-232ENST00000640653 C20orf166-AS1Q96NR2 134 aa13.17□□□□□ -0.3
VEGFA-232ENST00000640653 M0R2T5 61 aa13.16□□□□□ -0.3
VEGFA-232ENST00000640653 TRBV7-4A0A0J9YYF1 115 aa13.15□□□□□ -0.3
VEGFA-232ENST00000640653 A0A1B0GV72 72 aa13.15□□□□□ -0.3
VEGFA-232ENST00000640653 SIGMAR1Q99720 223 aa13.14□□□□□ -0.31
VEGFA-232ENST00000640653 A8MUU9 505 aa13.13□□□□□ -0.31
VEGFA-232ENST00000640653 KRTAP10-6P60371 365 aaPredicted RBP13.11□□□□□ -0.31
VEGFA-232ENST00000640653 LORP23490 312 aaPredicted RBP13.1□□□□□ -0.31
VEGFA-232ENST00000640653 DSCR10P59022 87 aa13.09□□□□□ -0.31
VEGFA-232ENST00000640653 UBE2V1Q13404 147 aa13.09□□□□□ -0.31
VEGFA-232ENST00000640653 FLGP20930 4061 aaPredicted RBP13.08□□□□□ -0.32
VEGFA-232ENST00000640653 TRACP01848 142 aa13.07□□□□□ -0.32
VEGFA-232ENST00000640653 IGKV4-1P06312 121 aa13.07□□□□□ -0.32
VEGFA-232ENST00000640653 SCGB1C2P0DMR2 95 aa13.07□□□□□ -0.32
VEGFA-232ENST00000640653 CCKP06307 115 aa13.06□□□□□ -0.32
VEGFA-232ENST00000640653 LINC00313P59037 77 aa13.03□□□□□ -0.32
VEGFA-232ENST00000640653 LINC00472Q9H8W2 130 aa12.99□□□□□ -0.33
VEGFA-232ENST00000640653 RBM3P98179 157 aaKnown RBP12.98□□□□□ -0.33
VEGFA-232ENST00000640653 DEFB116Q30KQ4 102 aa12.97□□□□□ -0.33
VEGFA-232ENST00000640653 TRBV20-1A0A075B6N2 111 aa12.96□□□□□ -0.33
VEGFA-232ENST00000640653 DSCR8Q96T75 97 aa12.96□□□□□ -0.33
VEGFA-232ENST00000640653 VPS25Q9BRG1 176 aa12.96□□□□□ -0.33
VEGFA-232ENST00000640653 KRTAP16-1A8MUX0 517 aa12.93□□□□□ -0.34
VEGFA-232ENST00000640653 CRCT1Q9UGL9 99 aa12.93□□□□□ -0.34
VEGFA-232ENST00000640653 BAALC-AS2P0C853 105 aa12.91□□□□□ -0.34
VEGFA-232ENST00000640653 IGHV6-1A0A0B4J1U7 121 aa12.9□□□□□ -0.34
VEGFA-232ENST00000640653 M0R143 59 aa12.89□□□□□ -0.35
VEGFA-232ENST00000640653 NOTCH2NLQ7Z3S9 236 aa12.89□□□□□ -0.35
VEGFA-232ENST00000640653 C21orf62-AS1Q17RA5 79 aa12.88□□□□□ -0.35
VEGFA-232ENST00000640653 C9JAW5 83 aa12.87□□□□□ -0.35
VEGFA-232ENST00000640653 C8orf87E5RJ46 101 aa12.84□□□□□ -0.35
VEGFA-232ENST00000640653 ATXN8Q156A1 80 aa12.84□□□□□ -0.35
VEGFA-232ENST00000640653 A0A1B0GVX0 72 aa12.83□□□□□ -0.36
VEGFA-232ENST00000640653 J3KT08 172 aa12.8□□□□□ -0.36
VEGFA-232ENST00000640653 FSIP2Q5CZC0 6907 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms