RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 SSBP3-AS1Q7Z2R9 100 aa10.97□□□□□ -0.65
CLN3-260ENST00000637578 IGLV7-46A0A075B6I9 117 aa10.96□□□□□ -0.65
CLN3-260ENST00000637578 SPINK1P00995 79 aa10.96□□□□□ -0.65
CLN3-260ENST00000637578 CLEC2BQ92478 149 aa10.96□□□□□ -0.65
CLN3-260ENST00000637578 COX6CP09669 75 aa10.95□□□□□ -0.66
CLN3-260ENST00000637578 MOBPQ13875 183 aa10.95□□□□□ -0.66
CLN3-260ENST00000637578 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.95□□□□□ -0.66
CLN3-260ENST00000637578 Q8N377 158 aa10.95□□□□□ -0.66
CLN3-260ENST00000637578 MUC2Q02817 5179 aa10.94□□□□□ -0.66
CLN3-260ENST00000637578 SNCGO76070 127 aa10.93□□□□□ -0.66
CLN3-260ENST00000637578 LAMTOR3Q9UHA4 124 aa10.93□□□□□ -0.66
CLN3-260ENST00000637578 A0A1B0GX51 115 aa10.92□□□□□ -0.66
CLN3-260ENST00000637578 C9orf153Q5TBE3 101 aa10.92□□□□□ -0.66
CLN3-260ENST00000637578 FP248Q71RG6 208 aaPredicted RBP10.92□□□□□ -0.66
CLN3-260ENST00000637578 SMIM29Q86T20 159 aa10.92□□□□□ -0.66
CLN3-260ENST00000637578 NAA38Q9BRA0 125 aaKnown RBP10.92□□□□□ -0.66
CLN3-260ENST00000637578 RPS29P62273 56 aaKnown RBP10.91□□□□□ -0.66
CLN3-260ENST00000637578 SCGB1C2P0DMR2 95 aa10.9□□□□□ -0.66
CLN3-260ENST00000637578 SNHG12Q9BXW3 62 aa10.89□□□□□ -0.67
CLN3-260ENST00000637578 PCP4L1A6NKN8 68 aa10.87□□□□□ -0.67
CLN3-260ENST00000637578 CDIP1Q9H305 208 aa10.87□□□□□ -0.67
CLN3-260ENST00000637578 OCIAD2Q56VL3 154 aa10.86□□□□□ -0.67
CLN3-260ENST00000637578 PPDPFLQ8WWR9 84 aa10.86□□□□□ -0.67
CLN3-260ENST00000637578 LST1O00453 97 aa10.85□□□□□ -0.67
CLN3-260ENST00000637578 TAX1BP3O14907 124 aa10.84□□□□□ -0.67
CLN3-260ENST00000637578 DNAL4O96015 105 aa10.84□□□□□ -0.67
CLN3-260ENST00000637578 H3BUT2 72 aa10.83□□□□□ -0.68
CLN3-260ENST00000637578 TRACP01848 142 aa10.82□□□□□ -0.68
CLN3-260ENST00000637578 F8WEM9 126 aa10.82□□□□□ -0.68
CLN3-260ENST00000637578 KRTAP13-3Q3SY46 172 aa10.82□□□□□ -0.68
CLN3-260ENST00000637578 MUC17Q685J3 4493 aa10.81□□□□□ -0.68
CLN3-260ENST00000637578 C9orf118A6NHY6 69 aa10.81□□□□□ -0.68
CLN3-260ENST00000637578 TCL1BO95988 128 aa10.8□□□□□ -0.68
CLN3-260ENST00000637578 ORMDL1Q9P0S3 153 aa10.8□□□□□ -0.68
CLN3-260ENST00000637578 GHRHP01286 108 aa10.78□□□□□ -0.68
CLN3-260ENST00000637578 FABP2P12104 132 aa10.78□□□□□ -0.68
CLN3-260ENST00000637578 LYRM7Q5U5X0 104 aa10.78□□□□□ -0.68
CLN3-260ENST00000637578 A0A0G2JQZ4 141 aa10.77□□□□□ -0.68
CLN3-260ENST00000637578 ATXN8Q156A1 80 aa10.77□□□□□ -0.69
CLN3-260ENST00000637578 COL5A1-AS1Q5SY13 56 aa10.77□□□□□ -0.69
CLN3-260ENST00000637578 IGLV8-61A0A075B6I0 122 aa10.76□□□□□ -0.69
CLN3-260ENST00000637578 NDUFV3P56181 108 aaKnown RBP10.76□□□□□ -0.69
CLN3-260ENST00000637578 A0A1W2PPM0 123 aa10.74□□□□□ -0.69
CLN3-260ENST00000637578 HRCT1Q6UXD1 115 aa10.74□□□□□ -0.69
CLN3-260ENST00000637578 H3BQ85 93 aa10.73□□□□□ -0.69
CLN3-260ENST00000637578 TMEM256-PLSCR3K7ERE1 68 aa10.73□□□□□ -0.69
CLN3-260ENST00000637578 TRBV20-1A0A075B6N2 111 aa10.72□□□□□ -0.69
CLN3-260ENST00000637578 A0A0U1RQV1 116 aa10.72□□□□□ -0.69
CLN3-260ENST00000637578 Q6JHZ5 121 aa10.72□□□□□ -0.69
CLN3-260ENST00000637578 IGFL1Q6UW32 110 aa10.72□□□□□ -0.69
CLN3-260ENST00000637578 H3BMG7 143 aa10.7□□□□□ -0.7
CLN3-260ENST00000637578 CD164Q04900 197 aa10.7□□□□□ -0.7
CLN3-260ENST00000637578 BAALC-AS2P0C853 105 aa10.69□□□□□ -0.7
CLN3-260ENST00000637578 UBE2V1Q13404 147 aa10.68□□□□□ -0.7
CLN3-260ENST00000637578 ASB16-AS1Q495Z4 193 aa10.68□□□□□ -0.7
CLN3-260ENST00000637578 LIMD2Q9BT23 127 aa10.68□□□□□ -0.7
CLN3-260ENST00000637578 A0A1B0GV72 72 aa10.67□□□□□ -0.7
CLN3-260ENST00000637578 FAT4Q6V0I7 4981 aa10.64□□□□□ -0.71
CLN3-260ENST00000637578 C9JAW5 83 aa10.64□□□□□ -0.71
CLN3-260ENST00000637578 ANKRD29Q8N6D5 301 aa10.64□□□□□ -0.71
CLN3-260ENST00000637578 SPCS1Q9Y6A9 102 aa10.64□□□□□ -0.71
CLN3-260ENST00000637578 Q5XG85 94 aa10.63□□□□□ -0.71
CLN3-260ENST00000637578 XP32Q5T750 250 aa10.62□□□□□ -0.71
CLN3-260ENST00000637578 TRBV7-7A0A0K0K1E9 115 aa10.6□□□□□ -0.71
CLN3-260ENST00000637578 SEC61BP60468 96 aaKnown RBP10.6□□□□□ -0.71
CLN3-260ENST00000637578 LCE2AQ5TA79 106 aaPredicted RBP10.6□□□□□ -0.71
CLN3-260ENST00000637578 MTURNQ8N3F0 131 aa10.58□□□□□ -0.72
CLN3-260ENST00000637578 RBM3P98179 157 aaKnown RBP10.56□□□□□ -0.72
CLN3-260ENST00000637578 Q6Q795 121 aa10.56□□□□□ -0.72
CLN3-260ENST00000637578 TEN1Q86WV5 123 aa10.56□□□□□ -0.72
CLN3-260ENST00000637578 A0A1W2PNM2 257 aa10.56□□□□□ -0.72
CLN3-260ENST00000637578 TRBV7-4A0A0J9YYF1 115 aa10.55□□□□□ -0.72
CLN3-260ENST00000637578 K7EP34 96 aa10.55□□□□□ -0.72
CLN3-260ENST00000637578 KRTAP4-1Q9BYQ7 146 aa10.55□□□□□ -0.72
CLN3-260ENST00000637578 H3BT86 120 aa10.54□□□□□ -0.72
CLN3-260ENST00000637578 C1orf195Q5TG92 126 aa10.52□□□□□ -0.72
CLN3-260ENST00000637578 DSCR8Q96T75 97 aa10.52□□□□□ -0.73
CLN3-260ENST00000637578 JMJD7-PLA2G4BH0Y9G9 81 aa10.51□□□□□ -0.73
CLN3-260ENST00000637578 CCKP06307 115 aa10.51□□□□□ -0.73
CLN3-260ENST00000637578 A0A087WSZ3 146 aa10.5□□□□□ -0.73
CLN3-260ENST00000637578 OBSCN-AS1Q96MR7 158 aa10.48□□□□□ -0.73
CLN3-260ENST00000637578 SMCPP49901 116 aaPredicted RBP10.48□□□□□ -0.73
CLN3-260ENST00000637578 GTF2H5Q6ZYL4 71 aa10.47□□□□□ -0.73
CLN3-260ENST00000637578 VPS25Q9BRG1 176 aa10.47□□□□□ -0.73
CLN3-260ENST00000637578 C14orf132Q9NPU4 83 aa10.47□□□□□ -0.73
CLN3-260ENST00000637578 PRO0461Q9UI25 63 aa10.47□□□□□ -0.73
CLN3-260ENST00000637578 C9orf92A6NGG3 77 aa10.46□□□□□ -0.74
CLN3-260ENST00000637578 SS18L2Q9UHA2 77 aa10.46□□□□□ -0.74
CLN3-260ENST00000637578 LOC110117498A0A087WWA1 95 aa10.44□□□□□ -0.74
CLN3-260ENST00000637578 Q6ZQT0 140 aa10.43□□□□□ -0.74
CLN3-260ENST00000637578 PDE6GP18545 87 aa10.41□□□□□ -0.74
CLN3-260ENST00000637578 PCOTHQ58A44 107 aa10.38□□□□□ -0.75
CLN3-260ENST00000637578 Q96NJ1 140 aa10.37□□□□□ -0.75
CLN3-260ENST00000637578 F8W1H4 67 aa10.34□□□□□ -0.75
CLN3-260ENST00000637578 A0A1B0GW54 56 aa10.31□□□□□ -0.76
CLN3-260ENST00000637578 RPL37P61927 97 aaKnown RBP10.31□□□□□ -0.76
CLN3-260ENST00000637578 C21orf62-AS1Q17RA5 79 aa10.31□□□□□ -0.76
CLN3-260ENST00000637578 LINC00472Q9H8W2 130 aa10.31□□□□□ -0.76
CLN3-260ENST00000637578 A0A1B0GV90 55 aa10.3□□□□□ -0.76
CLN3-260ENST00000637578 KRTAP19-2Q3LHN2 52 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms