RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 HIST1H2BJP06899 126 aa8.99□□□□□ -0.97
CLK3-221ENST00000568139 HIST1H2BOP23527 126 aa8.99□□□□□ -0.97
CLK3-221ENST00000568139 HIST1H2BBP33778 126 aa8.99□□□□□ -0.97
CLK3-221ENST00000568139 HIST1H2BDP58876 126 aa8.99□□□□□ -0.97
CLK3-221ENST00000568139 HIST1H2BCP62807 126 aa8.99□□□□□ -0.97
CLK3-221ENST00000568139 HIST2H2BEQ16778 126 aa8.99□□□□□ -0.97
CLK3-221ENST00000568139 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.99□□□□□ -0.97
CLK3-221ENST00000568139 LINC00575Q6W349 94 aa8.99□□□□□ -0.97
CLK3-221ENST00000568139 HIST1H2BHQ93079 126 aa8.99□□□□□ -0.97
CLK3-221ENST00000568139 HIST1H2BNQ99877 126 aa8.99□□□□□ -0.97
CLK3-221ENST00000568139 HIST1H2BMQ99879 126 aa8.99□□□□□ -0.97
CLK3-221ENST00000568139 ANKRD39Q53RE8 183 aa8.97□□□□□ -0.97
CLK3-221ENST00000568139 OCIAD2Q56VL3 154 aa8.97□□□□□ -0.97
CLK3-221ENST00000568139 VAMP3Q15836 100 aa8.96□□□□□ -0.98
CLK3-221ENST00000568139 Q6ZQY7 126 aa8.96□□□□□ -0.98
CLK3-221ENST00000568139 SLC7A5P1Q8MH63 180 aa8.96□□□□□ -0.98
CLK3-221ENST00000568139 Q96NJ1 140 aa8.96□□□□□ -0.98
CLK3-221ENST00000568139 hADV29S1A0JD25 119 aa8.95□□□□□ -0.98
CLK3-221ENST00000568139 C20orf166-AS1Q96NR2 134 aa8.94□□□□□ -0.98
CLK3-221ENST00000568139 LST1O00453 97 aa8.93□□□□□ -0.98
CLK3-221ENST00000568139 TRBV20-1A0A075B6N2 111 aa8.92□□□□□ -0.98
CLK3-221ENST00000568139 KRTDAPP60985 99 aa8.92□□□□□ -0.98
CLK3-221ENST00000568139 A8MUU9 505 aa8.91□□□□□ -0.98
CLK3-221ENST00000568139 FCGBPQ9Y6R7 5405 aaPredicted RBP8.91□□□□□ -0.98
CLK3-221ENST00000568139 MT2AP02795 61 aa8.9□□□□□ -0.98
CLK3-221ENST00000568139 KRTAP19-1Q8IUB9 90 aa8.89□□□□□ -0.99
CLK3-221ENST00000568139 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.88□□□□□ -0.99
CLK3-221ENST00000568139 LCE2BO14633 110 aa8.87□□□□□ -0.99
CLK3-221ENST00000568139 ATOH7Q8N100 152 aa8.87□□□□□ -0.99
CLK3-221ENST00000568139 PPDPFLQ8WWR9 84 aa8.87□□□□□ -0.99
CLK3-221ENST00000568139 COA6Q5JTJ3 125 aaKnown RBP8.85□□□□□ -0.99
CLK3-221ENST00000568139 H3BUT2 72 aa8.84□□□□□ -0.99
CLK3-221ENST00000568139 SCGB1D1O95968 90 aa8.84□□□□□ -0.99
CLK3-221ENST00000568139 MT1FP04733 61 aa8.84□□□□□ -0.99
CLK3-221ENST00000568139 SNHG12Q9BXW3 62 aa8.84□□□□□ -0.99
CLK3-221ENST00000568139 SS18L2Q9UHA2 77 aa8.84□□□□□ -0.99
CLK3-221ENST00000568139 KRTAP9-3Q9BYQ3 159 aa8.83□□□□□ -1
CLK3-221ENST00000568139 SNRPEP62304 92 aaKnown RBP8.79□□□□□ -1
CLK3-221ENST00000568139 KRTAP3-3Q9BYR6 98 aa8.79□□□□□ -1
CLK3-221ENST00000568139 KRTAP3-2Q9BYR7 98 aa8.79□□□□□ -1
CLK3-221ENST00000568139 KRTAP16-1A8MUX0 517 aa8.78□□□□□ -1
CLK3-221ENST00000568139 BVES-AS1Q5T3Y7 98 aa8.78□□□□□ -1
CLK3-221ENST00000568139 TEN1Q86WV5 123 aa8.78□□□□□ -1
CLK3-221ENST00000568139 FAM236DA0A1B0GTK5 79 aa8.77□□□□□ -1.01
CLK3-221ENST00000568139 FAM236CP0DP71 79 aa8.77□□□□□ -1.01
CLK3-221ENST00000568139 DSCR10P59022 87 aa8.76□□□□□ -1.01
CLK3-221ENST00000568139 KRTAP10-10P60014 251 aa8.76□□□□□ -1.01
CLK3-221ENST00000568139 MPLKIPQ8TAP9 179 aa8.75□□□□□ -1.01
CLK3-221ENST00000568139 A0A087WSZ3 146 aa8.74□□□□□ -1.01
CLK3-221ENST00000568139 HRES1P13985 223 aa8.72□□□□□ -1.01
CLK3-221ENST00000568139 RBM12B-AS1Q9P1G2 102 aa8.72□□□□□ -1.01
CLK3-221ENST00000568139 NDUFV3P56181 108 aaKnown RBP8.7□□□□□ -1.02
CLK3-221ENST00000568139 C12orf57Q99622 126 aa8.7□□□□□ -1.02
CLK3-221ENST00000568139 LINC00313P59037 77 aa8.69□□□□□ -1.02
CLK3-221ENST00000568139 MACF1Q9UPN3 7388 aaKnown RBP8.67□□□□□ -1.02
CLK3-221ENST00000568139 NOTCH2NLQ7Z3S9 236 aa8.65□□□□□ -1.02
CLK3-221ENST00000568139 SIGMAR1Q99720 223 aa8.65□□□□□ -1.02
CLK3-221ENST00000568139 LINC00846Q9NV44 126 aa8.65□□□□□ -1.02
CLK3-221ENST00000568139 HSBP1L1C9JCN9 74 aa8.64□□□□□ -1.03
CLK3-221ENST00000568139 SNCGO76070 127 aa8.64□□□□□ -1.03
CLK3-221ENST00000568139 KRTAP19-6Q3LI70 58 aa8.64□□□□□ -1.03
CLK3-221ENST00000568139 SYNE2Q8WXH0 6885 aaKnown RBP8.63□□□□□ -1.03
CLK3-221ENST00000568139 H3BMG7 143 aa8.63□□□□□ -1.03
CLK3-221ENST00000568139 FAM218AQ96MZ4 157 aa8.63□□□□□ -1.03
CLK3-221ENST00000568139 HIST1H4GQ99525 98 aa8.63□□□□□ -1.03
CLK3-221ENST00000568139 A0A1W2PNM2 257 aa8.62□□□□□ -1.03
CLK3-221ENST00000568139 H0YGX0 51 aa8.62□□□□□ -1.03
CLK3-221ENST00000568139 IGKV4-1P06312 121 aa8.6□□□□□ -1.03
CLK3-221ENST00000568139 GHRHP01286 108 aa8.56□□□□□ -1.04
CLK3-221ENST00000568139 FABP2P12104 132 aa8.56□□□□□ -1.04
CLK3-221ENST00000568139 HIST3H2BBQ8N257 126 aa8.56□□□□□ -1.04
CLK3-221ENST00000568139 HIST1H2BLQ99880 126 aa8.56□□□□□ -1.04
CLK3-221ENST00000568139 A0A1B0GX51 115 aa8.55□□□□□ -1.04
CLK3-221ENST00000568139 RAB37Q96AX2 223 aa8.55□□□□□ -1.04
CLK3-221ENST00000568139 TRBV7-4A0A0J9YYF1 115 aa8.54□□□□□ -1.04
CLK3-221ENST00000568139 MTURNQ8N3F0 131 aa8.54□□□□□ -1.04
CLK3-221ENST00000568139 A0A0B4J2C4 111 aa8.53□□□□□ -1.04
CLK3-221ENST00000568139 COX8AP10176 69 aa8.53□□□□□ -1.04
CLK3-221ENST00000568139 LINC00472Q9H8W2 130 aa8.53□□□□□ -1.04
CLK3-221ENST00000568139 S100A2P29034 98 aa8.51□□□□□ -1.05
CLK3-221ENST00000568139 DEFB116Q30KQ4 102 aa8.51□□□□□ -1.05
CLK3-221ENST00000568139 IGHV6-1A0A0B4J1U7 121 aa8.5□□□□□ -1.05
CLK3-221ENST00000568139 DLEU1O43261 78 aa8.5□□□□□ -1.05
CLK3-221ENST00000568139 ANKRD29Q8N6D5 301 aa8.5□□□□□ -1.05
CLK3-221ENST00000568139 KRTAP6-3Q3LI67 103 aa8.48□□□□□ -1.05
CLK3-221ENST00000568139 A8MWP4 228 aa8.46□□□□□ -1.06
CLK3-221ENST00000568139 C8orf87E5RJ46 101 aa8.44□□□□□ -1.06
CLK3-221ENST00000568139 SPINK7P58062 85 aa8.44□□□□□ -1.06
CLK3-221ENST00000568139 ZCCHC13Q8WW36 166 aaKnown RBP8.44□□□□□ -1.06
CLK3-221ENST00000568139 HIGD1BQ9P298 99 aa8.44□□□□□ -1.06
CLK3-221ENST00000568139 A0A1B0GV72 72 aa8.42□□□□□ -1.06
CLK3-221ENST00000568139 A0A1B0GVX0 72 aa8.42□□□□□ -1.06
CLK3-221ENST00000568139 PRO1854Q9UHT4 67 aa8.42□□□□□ -1.06
CLK3-221ENST00000568139 H3BQ85 93 aa8.41□□□□□ -1.06
CLK3-221ENST00000568139 TRACP01848 142 aa8.41□□□□□ -1.06
CLK3-221ENST00000568139 CCKP06307 115 aa8.41□□□□□ -1.06
CLK3-221ENST00000568139 C14orf144Q96I85 54 aa8.41□□□□□ -1.06
CLK3-221ENST00000568139 TRIAP1O43715 76 aa8.4□□□□□ -1.06
CLK3-221ENST00000568139 ORMDL1Q9P0S3 153 aa8.4□□□□□ -1.06
CLK3-221ENST00000568139 C2orf91Q6ZV80 131 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms