RNA–Protein interactions for RNA: ENST00000566126.5

CLK3-217, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 732 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-217ENST00000566126 KRTAP10-5P60370 271 aa7.67□□□□□ -1.18
CLK3-217ENST00000566126 COX19Q49B96 90 aa7.67□□□□□ -1.18
CLK3-217ENST00000566126 LINC00518Q8N0U6 118 aa7.66□□□□□ -1.18
CLK3-217ENST00000566126 LITAFQ99732 161 aa7.63□□□□□ -1.19
CLK3-217ENST00000566126 S100PP25815 95 aa7.61□□□□□ -1.19
CLK3-217ENST00000566126 H0Y8G0 127 aa7.6□□□□□ -1.19
CLK3-217ENST00000566126 SPRR2FQ96RM1 72 aa7.6□□□□□ -1.19
CLK3-217ENST00000566126 GHRHP01286 108 aa7.59□□□□□ -1.19
CLK3-217ENST00000566126 TRAV13-2A0A0B4J235 113 aa7.58□□□□□ -1.2
CLK3-217ENST00000566126 HERVK_113P61574 105 aa7.58□□□□□ -1.2
CLK3-217ENST00000566126 OCIAD2Q56VL3 154 aa7.58□□□□□ -1.2
CLK3-217ENST00000566126 ZNF815PA8K554 130 aa7.57□□□□□ -1.2
CLK3-217ENST00000566126 A4D1N5 150 aa7.56□□□□□ -1.2
CLK3-217ENST00000566126 NHP2Q9NX24 153 aaKnown RBP7.56□□□□□ -1.2
CLK3-217ENST00000566126 PLNP26678 52 aa7.55□□□□□ -1.2
CLK3-217ENST00000566126 TRAPPC1Q9Y5R8 145 aa7.55□□□□□ -1.2
CLK3-217ENST00000566126 ANKRD39Q53RE8 183 aa7.54□□□□□ -1.2
CLK3-217ENST00000566126 SLC7A5P1Q8MH63 180 aa7.54□□□□□ -1.2
CLK3-217ENST00000566126 SS18L2Q9UHA2 77 aa7.54□□□□□ -1.2
CLK3-217ENST00000566126 LINC00313P59037 77 aa7.53□□□□□ -1.2
CLK3-217ENST00000566126 Q5VV11 94 aa7.53□□□□□ -1.2
CLK3-217ENST00000566126 COLCA2A8K830 154 aa7.52□□□□□ -1.21
CLK3-217ENST00000566126 CHCHD1Q96BP2 118 aaKnown RBP7.52□□□□□ -1.21
CLK3-217ENST00000566126 TIMM17BO60830 172 aa7.51□□□□□ -1.21
CLK3-217ENST00000566126 CLLU1Q5K131 121 aa7.51□□□□□ -1.21
CLK3-217ENST00000566126 LCE1AQ5T7P2 110 aa7.51□□□□□ -1.21
CLK3-217ENST00000566126 SERF1AO75920 110 aa7.5□□□□□ -1.21
CLK3-217ENST00000566126 DPM2O94777 84 aa7.5□□□□□ -1.21
CLK3-217ENST00000566126 SPINK7P58062 85 aa7.5□□□□□ -1.21
CLK3-217ENST00000566126 PMCHL2Q9BQD1 86 aa7.5□□□□□ -1.21
CLK3-217ENST00000566126 A0A1W2PNM2 257 aa7.49□□□□□ -1.21
CLK3-217ENST00000566126 H3BUT2 72 aa7.48□□□□□ -1.21
CLK3-217ENST00000566126 KRTAP19-8Q3LI54 63 aa7.48□□□□□ -1.21
CLK3-217ENST00000566126 Q6ZQY7 126 aa7.48□□□□□ -1.21
CLK3-217ENST00000566126 IGKCP01834 107 aa7.47□□□□□ -1.21
CLK3-217ENST00000566126 FAM218AQ96MZ4 157 aa7.47□□□□□ -1.21
CLK3-217ENST00000566126 A6NDN8 102 aa7.46□□□□□ -1.22
CLK3-217ENST00000566126 E9PLD3 99 aa7.46□□□□□ -1.22
CLK3-217ENST00000566126 SPRR2DP22532 72 aa7.46□□□□□ -1.22
CLK3-217ENST00000566126 SIGMAR1Q99720 223 aa7.46□□□□□ -1.22
CLK3-217ENST00000566126 UQCC3Q6UW78 93 aa7.44□□□□□ -1.22
CLK3-217ENST00000566126 A0A087WSZ3 146 aa7.43□□□□□ -1.22
CLK3-217ENST00000566126 LINC00575Q6W349 94 aa7.43□□□□□ -1.22
CLK3-217ENST00000566126 WFDC13Q8IUB5 93 aa7.43□□□□□ -1.22
CLK3-217ENST00000566126 SMIM11BQ8TCY0 68 aa7.43□□□□□ -1.22
CLK3-217ENST00000566126 HSBP1O75506 76 aa7.4□□□□□ -1.22
CLK3-217ENST00000566126 LEPROTL1O95214 131 aa7.4□□□□□ -1.22
CLK3-217ENST00000566126 TEN1Q86WV5 123 aa7.39□□□□□ -1.23
CLK3-217ENST00000566126 hADV29S1A0JD25 119 aa7.38□□□□□ -1.23
CLK3-217ENST00000566126 TMEM218A2RU14 115 aa7.38□□□□□ -1.23
CLK3-217ENST00000566126 ZCCHC13Q8WW36 166 aaKnown RBP7.37□□□□□ -1.23
CLK3-217ENST00000566126 SCGB1D1O95968 90 aa7.36□□□□□ -1.23
CLK3-217ENST00000566126 SPRR2GQ9BYE4 73 aa7.36□□□□□ -1.23
CLK3-217ENST00000566126 SNHG12Q9BXW3 62 aa7.35□□□□□ -1.23
CLK3-217ENST00000566126 TTTY13Q9BZ97 58 aa7.35□□□□□ -1.23
CLK3-217ENST00000566126 IGKV4-1P06312 121 aa7.34□□□□□ -1.23
CLK3-217ENST00000566126 LCE3BQ5TA77 95 aa7.34□□□□□ -1.23
CLK3-217ENST00000566126 PPDPFLQ8WWR9 84 aa7.33□□□□□ -1.24
CLK3-217ENST00000566126 HSPB8Q9UJY1 196 aa7.33□□□□□ -1.24
CLK3-217ENST00000566126 H1FX-AS1Q4G0G2 97 aa7.32□□□□□ -1.24
CLK3-217ENST00000566126 VAMP3Q15836 100 aa7.31□□□□□ -1.24
CLK3-217ENST00000566126 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.31□□□□□ -1.24
CLK3-217ENST00000566126 LINC00310P59036 64 aa7.3□□□□□ -1.24
CLK3-217ENST00000566126 IGHV6-1A0A0B4J1U7 121 aa7.29□□□□□ -1.24
CLK3-217ENST00000566126 FABP4P15090 132 aa7.29□□□□□ -1.24
CLK3-217ENST00000566126 IFITM1P13164 125 aa7.27□□□□□ -1.25
CLK3-217ENST00000566126 MUSTN1Q8IVN3 82 aa7.26□□□□□ -1.25
CLK3-217ENST00000566126 FAM236AA0A1B0GUQ0 79 aa7.25□□□□□ -1.25
CLK3-217ENST00000566126 FAM236BA0A1B0GV22 79 aa7.25□□□□□ -1.25
CLK3-217ENST00000566126 KRTAP8-1Q8IUC2 63 aa7.25□□□□□ -1.25
CLK3-217ENST00000566126 COPS9Q8WXC6 57 aa7.25□□□□□ -1.25
CLK3-217ENST00000566126 IMUPQ9GZP8 106 aa7.25□□□□□ -1.25
CLK3-217ENST00000566126 DSTQ03001 7570 aaKnown RBP7.25□□□□□ -1.25
CLK3-217ENST00000566126 DEFB116Q30KQ4 102 aa7.24□□□□□ -1.25
CLK3-217ENST00000566126 NDUFA5Q16718 116 aa7.23□□□□□ -1.25
CLK3-217ENST00000566126 SVBPQ8N300 66 aa7.23□□□□□ -1.25
CLK3-217ENST00000566126 SNAPINO95295 136 aa7.22□□□□□ -1.25
CLK3-217ENST00000566126 APOC3P02656 99 aa7.21□□□□□ -1.26
CLK3-217ENST00000566126 SCGB1D4Q6XE38 83 aa7.2□□□□□ -1.26
CLK3-217ENST00000566126 LINC00472Q9H8W2 130 aa7.19□□□□□ -1.26
CLK3-217ENST00000566126 C3orf79P0CE67 100 aa7.18□□□□□ -1.26
CLK3-217ENST00000566126 SMCPP49901 116 aaPredicted RBP7.18□□□□□ -1.26
CLK3-217ENST00000566126 NDUFV3P56181 108 aaKnown RBP7.17□□□□□ -1.26
CLK3-217ENST00000566126 C8orf87E5RJ46 101 aa7.16□□□□□ -1.26
CLK3-217ENST00000566126 YPEL4Q96NS1 127 aa7.16□□□□□ -1.26
CLK3-217ENST00000566126 A0A1B0GVX0 72 aa7.13□□□□□ -1.27
CLK3-217ENST00000566126 H3BMG7 143 aa7.12□□□□□ -1.27
CLK3-217ENST00000566126 RAB37Q96AX2 223 aa7.12□□□□□ -1.27
CLK3-217ENST00000566126 KRTAP4-9Q9BYQ8 210 aa7.12□□□□□ -1.27
CLK3-217ENST00000566126 SYS1-DBNDD2H3BUS1 97 aa7.11□□□□□ -1.27
CLK3-217ENST00000566126 C12orf57Q99622 126 aa7.1□□□□□ -1.27
CLK3-217ENST00000566126 LOC100996750A0A140TA64 210 aa7.09□□□□□ -1.27
CLK3-217ENST00000566126 KRTAP4-6Q9BYQ5 205 aa7.09□□□□□ -1.27
CLK3-217ENST00000566126 LINC01545Q5VT33 79 aa7.08□□□□□ -1.28
CLK3-217ENST00000566126 C5orf47Q569G3 176 aa7.07□□□□□ -1.28
CLK3-217ENST00000566126 TRBV7-4A0A0J9YYF1 115 aa7.06□□□□□ -1.28
CLK3-217ENST00000566126 BVES-AS1Q5T3Y7 98 aa7.06□□□□□ -1.28
CLK3-217ENST00000566126 TRGC2P03986 189 aa7.05□□□□□ -1.28
CLK3-217ENST00000566126 IGKV3D-7A0A0C4DH55 119 aa7.03□□□□□ -1.28
CLK3-217ENST00000566126 LYRM7Q5U5X0 104 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms