RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 NDUFB1O75438 58 aa8.59□□□□□ -1.03
CLK3-206ENST00000562078 VPREB1P12018 145 aa8.59□□□□□ -1.03
CLK3-206ENST00000562078 KRTAP21-3Q3LHN1 58 aa8.59□□□□□ -1.03
CLK3-206ENST00000562078 Q8N377 158 aa8.59□□□□□ -1.03
CLK3-206ENST00000562078 DNAH9Q9NYC9 4486 aa8.59□□□□□ -1.03
CLK3-206ENST00000562078 LINC00208Q96KT6 92 aa8.58□□□□□ -1.04
CLK3-206ENST00000562078 COL7A1Q02388 2944 aa8.58□□□□□ -1.04
CLK3-206ENST00000562078 IGLV5-48A0A075B6I7 105 aa8.57□□□□□ -1.04
CLK3-206ENST00000562078 Q75L30 129 aa8.56□□□□□ -1.04
CLK3-206ENST00000562078 GVQW2A0A096LPI5 108 aaPredicted RBP8.55□□□□□ -1.04
CLK3-206ENST00000562078 C7orf65Q6ZTY9 151 aa8.55□□□□□ -1.04
CLK3-206ENST00000562078 MP68P56378 58 aa8.54□□□□□ -1.04
CLK3-206ENST00000562078 C1orf137Q5JT78 98 aa8.53□□□□□ -1.04
CLK3-206ENST00000562078 WFDC13Q8IUB5 93 aa8.53□□□□□ -1.04
CLK3-206ENST00000562078 MEGF8Q7Z7M0 2845 aa8.52□□□□□ -1.05
CLK3-206ENST00000562078 KCNQ1DNQ9H478 68 aa8.52□□□□□ -1.05
CLK3-206ENST00000562078 KRTAP26-1Q6PEX3 210 aa8.51□□□□□ -1.05
CLK3-206ENST00000562078 Q8NBF4 154 aa8.51□□□□□ -1.05
CLK3-206ENST00000562078 CDC42SE1Q9NRR8 79 aa8.51□□□□□ -1.05
CLK3-206ENST00000562078 MOBPQ13875 183 aa8.51□□□□□ -1.05
CLK3-206ENST00000562078 Q9BRP9 147 aa8.51□□□□□ -1.05
CLK3-206ENST00000562078 STAB2Q8WWQ8 2551 aa8.5□□□□□ -1.05
CLK3-206ENST00000562078 LINC01556Q5JQF7 62 aa8.5□□□□□ -1.05
CLK3-206ENST00000562078 LOC101927531A0A1B0GV80 90 aa8.49□□□□□ -1.05
CLK3-206ENST00000562078 PRR26Q8N8Z3 221 aa8.49□□□□□ -1.05
CLK3-206ENST00000562078 PRKDCP78527 4128 aaKnown RBP8.49□□□□□ -1.05
CLK3-206ENST00000562078 SPANXA2-OT1Q8N9U9 137 aa8.48□□□□□ -1.05
CLK3-206ENST00000562078 A0A1B0GW54 56 aa8.48□□□□□ -1.05
CLK3-206ENST00000562078 IGKV2D-24A0A075B6R9 120 aa8.47□□□□□ -1.05
CLK3-206ENST00000562078 C15orf56Q8N910 161 aa8.47□□□□□ -1.05
CLK3-206ENST00000562078 CAMK2N2Q96S95 79 aa8.47□□□□□ -1.05
CLK3-206ENST00000562078 TNP2Q05952 138 aa8.47□□□□□ -1.05
CLK3-206ENST00000562078 SPRR4Q96PI1 79 aa8.47□□□□□ -1.05
CLK3-206ENST00000562078 C7orf33Q8WU49 177 aa8.46□□□□□ -1.06
CLK3-206ENST00000562078 A0A0G2JQZ4 141 aa8.45□□□□□ -1.06
CLK3-206ENST00000562078 A0A1W2PNN7 141 aa8.45□□□□□ -1.06
CLK3-206ENST00000562078 COA5Q86WW8 74 aa8.45□□□□□ -1.06
CLK3-206ENST00000562078 H0Y9P7 68 aa8.45□□□□□ -1.06
CLK3-206ENST00000562078 DNAH10OSP0CZ25 163 aa8.45□□□□□ -1.06
CLK3-206ENST00000562078 RPL37AP61513 92 aaKnown RBP8.41□□□□□ -1.06
CLK3-206ENST00000562078 SPAG11AQ6PDA7 123 aa8.41□□□□□ -1.06
CLK3-206ENST00000562078 C9orf163Q8N9P6 203 aa8.4□□□□□ -1.06
CLK3-206ENST00000562078 PRAC1Q96KF2 57 aa8.4□□□□□ -1.06
CLK3-206ENST00000562078 SPINK7P58062 85 aa8.4□□□□□ -1.07
CLK3-206ENST00000562078 SERTAD4-AS1Q5TG53 156 aa8.4□□□□□ -1.07
CLK3-206ENST00000562078 RPL37AP8A6NKH3 93 aa8.39□□□□□ -1.07
CLK3-206ENST00000562078 Q6ZRX8 168 aa8.38□□□□□ -1.07
CLK3-206ENST00000562078 NKAPP1Q8N9T2 125 aa8.38□□□□□ -1.07
CLK3-206ENST00000562078 KRTAP29-1A8MX34 341 aaPredicted RBP8.38□□□□□ -1.07
CLK3-206ENST00000562078 LINC00313P59037 77 aa8.38□□□□□ -1.07
CLK3-206ENST00000562078 DHRS4-AS1Q9P1J3 65 aa8.38□□□□□ -1.07
CLK3-206ENST00000562078 DYNC2H1Q8NCM8 4307 aaKnown RBP8.37□□□□□ -1.07
CLK3-206ENST00000562078 CASC10Q5T4H9 136 aa8.37□□□□□ -1.07
CLK3-206ENST00000562078 CSMD3Q7Z407 3707 aa8.36□□□□□ -1.07
CLK3-206ENST00000562078 LYSTQ99698 3801 aa8.35□□□□□ -1.07
CLK3-206ENST00000562078 NUPR2A6NF83 97 aa8.35□□□□□ -1.07
CLK3-206ENST00000562078 LINC01558Q9Y6Z2 57 aa8.35□□□□□ -1.07
CLK3-206ENST00000562078 DNAH7Q8WXX0 4024 aa8.35□□□□□ -1.07
CLK3-206ENST00000562078 H3BPC8 53 aa8.35□□□□□ -1.07
CLK3-206ENST00000562078 LINC00476Q8WZB0 136 aa8.35□□□□□ -1.07
CLK3-206ENST00000562078 PLAC8Q9NZF1 115 aa8.34□□□□□ -1.07
CLK3-206ENST00000562078 FBN3Q75N90 2809 aa8.34□□□□□ -1.08
CLK3-206ENST00000562078 CASC2Q6XLA1 102 aa8.34□□□□□ -1.08
CLK3-206ENST00000562078 ADM2Q7Z4H4 148 aa8.34□□□□□ -1.08
CLK3-206ENST00000562078 TENM2Q9NT68 2774 aa8.33□□□□□ -1.08
CLK3-206ENST00000562078 UBE2DNLQ8IWF7 75 aa8.33□□□□□ -1.08
CLK3-206ENST00000562078 APLNQ9ULZ1 77 aa8.33□□□□□ -1.08
CLK3-206ENST00000562078 PLECQ15149 4684 aaKnown RBP8.33□□□□□ -1.08
CLK3-206ENST00000562078 IGLV7-46A0A075B6I9 117 aa8.32□□□□□ -1.08
CLK3-206ENST00000562078 A0A087WSZ3 146 aa8.32□□□□□ -1.08
CLK3-206ENST00000562078 KRTAP4-16G5E9R7 235 aaPredicted RBP8.32□□□□□ -1.08
CLK3-206ENST00000562078 PCOTHQ58A44 107 aa8.31□□□□□ -1.08
CLK3-206ENST00000562078 IGFL1Q6UW32 110 aa8.3□□□□□ -1.08
CLK3-206ENST00000562078 DNAH1Q9P2D7 4330 aa8.3□□□□□ -1.08
CLK3-206ENST00000562078 FAM168BA1KXE4 195 aa8.29□□□□□ -1.08
CLK3-206ENST00000562078 CNBPP62633 177 aaKnown RBP8.29□□□□□ -1.08
CLK3-206ENST00000562078 STARD9Q9P2P6 4700 aa8.29□□□□□ -1.08
CLK3-206ENST00000562078 TGP01266 2768 aa8.29□□□□□ -1.08
CLK3-206ENST00000562078 KRTAP1-5Q9BYS1 174 aa8.28□□□□□ -1.08
CLK3-206ENST00000562078 IGLV1-50A0A075B6I6 118 aa8.27□□□□□ -1.09
CLK3-206ENST00000562078 LINC01554Q52M75 96 aa8.27□□□□□ -1.09
CLK3-206ENST00000562078 TLX1NBP0CAT3 122 aa8.26□□□□□ -1.09
CLK3-206ENST00000562078 SPRR1AP35321 89 aa8.25□□□□□ -1.09
CLK3-206ENST00000562078 IGLV5-37A0A075B6J1 123 aa8.25□□□□□ -1.09
CLK3-206ENST00000562078 DNAH10Q8IVF4 4471 aa8.24□□□□□ -1.09
CLK3-206ENST00000562078 KRTAP7-1Q8IUC3 87 aa8.21□□□□□ -1.09
CLK3-206ENST00000562078 HRES1P13985 223 aa8.21□□□□□ -1.1
CLK3-206ENST00000562078 VPS13DQ5THJ4 4388 aa8.2□□□□□ -1.1
CLK3-206ENST00000562078 SRRM2Q9UQ35 2752 aaKnown RBP8.2□□□□□ -1.1
CLK3-206ENST00000562078 PLA2G2DQ9UNK4 145 aa8.2□□□□□ -1.1
CLK3-206ENST00000562078 WWC2-AS2Q96NR7 200 aa8.2□□□□□ -1.1
CLK3-206ENST00000562078 A8MWP4 228 aa8.19□□□□□ -1.1
CLK3-206ENST00000562078 PLA2G1BP04054 148 aaKnown RBP8.18□□□□□ -1.1
CLK3-206ENST00000562078 NBDYA0A0U1RRE5 68 aa8.16□□□□□ -1.1
CLK3-206ENST00000562078 H0Y9J4 135 aa8.15□□□□□ -1.1
CLK3-206ENST00000562078 MMP24-AS1A0A0U1RRL7 71 aa8.15□□□□□ -1.1
CLK3-206ENST00000562078 A0A096LNI7 61 aa8.14□□□□□ -1.11
CLK3-206ENST00000562078 IGKV2-24A0A0C4DH68 120 aa8.14□□□□□ -1.11
CLK3-206ENST00000562078 LINC00472Q9H8W2 130 aa8.14□□□□□ -1.11
CLK3-206ENST00000562078 PRLHP81277 87 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms