RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 SACSQ9NZJ4 4579 aa10.52□□□□□ -0.73
LDLR-206ENST00000557958 UBE2AP49459 152 aa10.51□□□□□ -0.73
LDLR-206ENST00000557958 BCE1O60756 84 aa10.5□□□□□ -0.73
LDLR-206ENST00000557958 F8WEM9 126 aa10.49□□□□□ -0.73
LDLR-206ENST00000557958 DNAH17Q9UFH2 4485 aa10.48□□□□□ -0.73
LDLR-206ENST00000557958 KRTAP11-1Q8IUC1 163 aa10.47□□□□□ -0.73
LDLR-206ENST00000557958 PLAC8Q9NZF1 115 aa10.47□□□□□ -0.73
LDLR-206ENST00000557958 FRAS1Q86XX4 4008 aa10.46□□□□□ -0.73
LDLR-206ENST00000557958 A0A1B0GW54 56 aa10.46□□□□□ -0.74
LDLR-206ENST00000557958 TMEM258P61165 79 aa10.46□□□□□ -0.74
LDLR-206ENST00000557958 LINC00336Q6ZUF6 198 aa10.45□□□□□ -0.74
LDLR-206ENST00000557958 C1orf137Q5JT78 98 aa10.44□□□□□ -0.74
LDLR-206ENST00000557958 J3KT08 172 aa10.44□□□□□ -0.74
LDLR-206ENST00000557958 KMT2CQ8NEZ4 4911 aaKnown RBP10.43□□□□□ -0.74
LDLR-206ENST00000557958 RPS28P62857 69 aaKnown RBP10.42□□□□□ -0.74
LDLR-206ENST00000557958 Q6ZVQ6 151 aa10.42□□□□□ -0.74
LDLR-206ENST00000557958 CYSTM1Q9H1C7 97 aa10.41□□□□□ -0.74
LDLR-206ENST00000557958 SMIM29Q86T20 159 aa10.4□□□□□ -0.74
LDLR-206ENST00000557958 SPRR1BP22528 89 aa10.4□□□□□ -0.75
LDLR-206ENST00000557958 KRTAP13-1Q8IUC0 172 aa10.4□□□□□ -0.75
LDLR-206ENST00000557958 CXCL6P80162 114 aa10.39□□□□□ -0.75
LDLR-206ENST00000557958 RYR2Q92736 4967 aa10.39□□□□□ -0.75
LDLR-206ENST00000557958 HAMPP81172 84 aa10.38□□□□□ -0.75
LDLR-206ENST00000557958 KRTAP10-1P60331 282 aa10.38□□□□□ -0.75
LDLR-206ENST00000557958 Q8NBF4 154 aa10.38□□□□□ -0.75
LDLR-206ENST00000557958 HECTD4Q9Y4D8 3996 aa10.37□□□□□ -0.75
LDLR-206ENST00000557958 IGLV8-61A0A075B6I0 122 aa10.37□□□□□ -0.75
LDLR-206ENST00000557958 FAM30AQ9NZY2 134 aa10.37□□□□□ -0.75
LDLR-206ENST00000557958 FAT2Q9NYQ8 4349 aa10.37□□□□□ -0.75
LDLR-206ENST00000557958 NREPQ16612 68 aa10.36□□□□□ -0.75
LDLR-206ENST00000557958 PSORS1C2Q9UIG4 136 aa10.36□□□□□ -0.75
LDLR-206ENST00000557958 ZNF706Q9Y5V0 76 aaPredicted RBP10.36□□□□□ -0.75
LDLR-206ENST00000557958 A0A1W2PNM2 257 aa10.34□□□□□ -0.75
LDLR-206ENST00000557958 TRAV7A0A075B6U4 112 aa10.34□□□□□ -0.75
LDLR-206ENST00000557958 SPRR4Q96PI1 79 aa10.34□□□□□ -0.75
LDLR-206ENST00000557958 DNAH11Q96DT5 4516 aa10.33□□□□□ -0.76
LDLR-206ENST00000557958 A0A1B0GVY2 172 aa10.32□□□□□ -0.76
LDLR-206ENST00000557958 IGFL1Q6UW32 110 aa10.31□□□□□ -0.76
LDLR-206ENST00000557958 ZNF861PO60384 105 aa10.3□□□□□ -0.76
LDLR-206ENST00000557958 PKD1P98161 4303 aa10.3□□□□□ -0.76
LDLR-206ENST00000557958 CIRBP-AS1Q8TBR5 109 aa10.3□□□□□ -0.76
LDLR-206ENST00000557958 SCXQ7RTU7 201 aa10.27□□□□□ -0.76
LDLR-206ENST00000557958 BPY2O14599 106 aa10.27□□□□□ -0.77
LDLR-206ENST00000557958 Q6ZSA8 131 aa10.27□□□□□ -0.77
LDLR-206ENST00000557958 DNAH5Q8TE73 4624 aa10.26□□□□□ -0.77
LDLR-206ENST00000557958 LINC00483Q53H64 154 aa10.26□□□□□ -0.77
LDLR-206ENST00000557958 C20orf197Q8N268 126 aa10.26□□□□□ -0.77
LDLR-206ENST00000557958 IGLV7-43P04211 117 aa10.24□□□□□ -0.77
LDLR-206ENST00000557958 KLKP1Q107X0 134 aa10.24□□□□□ -0.77
LDLR-206ENST00000557958 RYR3Q15413 4870 aa10.24□□□□□ -0.77
LDLR-206ENST00000557958 RPL37AP61513 92 aaKnown RBP10.23□□□□□ -0.77
LDLR-206ENST00000557958 FAM236DA0A1B0GTK5 79 aa10.21□□□□□ -0.78
LDLR-206ENST00000557958 FAM236CP0DP71 79 aa10.21□□□□□ -0.78
LDLR-206ENST00000557958 H7BZZ5 65 aa10.19□□□□□ -0.78
LDLR-206ENST00000557958 OXTP01178 125 aa10.19□□□□□ -0.78
LDLR-206ENST00000557958 A0A087WSZ3 146 aa10.19□□□□□ -0.78
LDLR-206ENST00000557958 IGLV9-49A0A0B4J1Y8 123 aa10.18□□□□□ -0.78
LDLR-206ENST00000557958 A0A0G2JQZ4 141 aa10.18□□□□□ -0.78
LDLR-206ENST00000557958 PKHD1P08F94 4074 aa10.17□□□□□ -0.78
LDLR-206ENST00000557958 NDUFC1O43677 76 aa10.15□□□□□ -0.78
LDLR-206ENST00000557958 IGKV4-1P06312 121 aa10.15□□□□□ -0.79
LDLR-206ENST00000557958 DNAH8Q96JB1 4490 aa10.14□□□□□ -0.79
LDLR-206ENST00000557958 SERP1Q9Y6X1 66 aa10.13□□□□□ -0.79
LDLR-206ENST00000557958 SMR3BP02814 79 aaPredicted RBP10.13□□□□□ -0.79
LDLR-206ENST00000557958 C5orf47Q569G3 176 aa10.12□□□□□ -0.79
LDLR-206ENST00000557958 Q8N9L7 120 aa10.11□□□□□ -0.79
LDLR-206ENST00000557958 ATP5EP56381 51 aaPredicted RBP10.1□□□□□ -0.79
LDLR-206ENST00000557958 MOBPQ13875 183 aa10.1□□□□□ -0.79
LDLR-206ENST00000557958 SNURFQ9Y675 71 aa10.08□□□□□ -0.8
LDLR-206ENST00000557958 LRP1BQ9NZR2 4599 aa10.08□□□□□ -0.8
LDLR-206ENST00000557958 Q5XG85 94 aa10.08□□□□□ -0.8
LDLR-206ENST00000557958 DYNC1H1Q14204 4646 aaKnown RBP10.07□□□□□ -0.8
LDLR-206ENST00000557958 DSCR10P59022 87 aa10.07□□□□□ -0.8
LDLR-206ENST00000557958 SRRM2Q9UQ35 2752 aaKnown RBP10.07□□□□□ -0.8
LDLR-206ENST00000557958 OCR1Q9BZK8 76 aa10.06□□□□□ -0.8
LDLR-206ENST00000557958 ANAPC11Q9NYG5 84 aa10.06□□□□□ -0.8
LDLR-206ENST00000557958 TMEM254Q8TBM7 123 aa10.06□□□□□ -0.8
LDLR-206ENST00000557958 K7EQZ3 153 aa10.04□□□□□ -0.8
LDLR-206ENST00000557958 SSBP3-AS1Q7Z2R9 100 aa10.02□□□□□ -0.8
LDLR-206ENST00000557958 LINC00472Q9H8W2 130 aa10.02□□□□□ -0.8
LDLR-206ENST00000557958 A0A0U1RQV1 116 aa10.01□□□□□ -0.81
LDLR-206ENST00000557958 DEFB116Q30KQ4 102 aa10.01□□□□□ -0.81
LDLR-206ENST00000557958 FAM229BQ4G0N7 80 aa10□□□□□ -0.81
LDLR-206ENST00000557958 HRCT1Q6UXD1 115 aa10□□□□□ -0.81
LDLR-206ENST00000557958 CD164Q04900 197 aa9.99□□□□□ -0.81
LDLR-206ENST00000557958 A8MWP4 228 aa9.98□□□□□ -0.81
LDLR-206ENST00000557958 HCG22E2RYF7 251 aa9.98□□□□□ -0.81
LDLR-206ENST00000557958 C4orf26Q17RF5 130 aa9.98□□□□□ -0.81
LDLR-206ENST00000557958 NDUFB1O75438 58 aa9.97□□□□□ -0.81
LDLR-206ENST00000557958 SMIM26A0A096LP01 95 aa9.96□□□□□ -0.82
LDLR-206ENST00000557958 PRR15Q8IV56 129 aa9.96□□□□□ -0.82
LDLR-206ENST00000557958 APOBP04114 4563 aaKnown RBP9.93□□□□□ -0.82
LDLR-206ENST00000557958 CDK2AP2O75956 126 aa9.93□□□□□ -0.82
LDLR-206ENST00000557958 SPINK6Q6UWN8 80 aa9.91□□□□□ -0.82
LDLR-206ENST00000557958 Q96NJ1 140 aa9.91□□□□□ -0.82
LDLR-206ENST00000557958 FAM229AH3BQW9 127 aa9.9□□□□□ -0.82
LDLR-206ENST00000557958 A0A087X002 238 aa9.89□□□□□ -0.83
LDLR-206ENST00000557958 VPS13BQ7Z7G8 4022 aa9.88□□□□□ -0.83
LDLR-206ENST00000557958 KRTAP1-4P0C5Y4 121 aa9.88□□□□□ -0.83
LDLR-206ENST00000557958 EPPK1P58107 5090 aaKnown RBP9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms