RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 KCNQ1DNQ9H478 68 aa7.12□□□□□ -1.27
SHMT2-216ENST00000554975 DHRS4-AS1Q9P1J3 65 aa7.12□□□□□ -1.27
SHMT2-216ENST00000554975 OXTP01178 125 aa7.1□□□□□ -1.27
SHMT2-216ENST00000554975 HIST1H4AP62805 103 aaKnown RBP7.1□□□□□ -1.27
SHMT2-216ENST00000554975 Q6ZSA8 131 aa7.1□□□□□ -1.27
SHMT2-216ENST00000554975 TRBV7-4A0A0J9YYF1 115 aa7.09□□□□□ -1.27
SHMT2-216ENST00000554975 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.08□□□□□ -1.28
SHMT2-216ENST00000554975 ETDCA0A1B0GVM5 59 aa7.08□□□□□ -1.28
SHMT2-216ENST00000554975 A0A1B0GW54 56 aa7.08□□□□□ -1.28
SHMT2-216ENST00000554975 UQCRQO14949 82 aa7.08□□□□□ -1.28
SHMT2-216ENST00000554975 C7orf33Q8WU49 177 aa7.08□□□□□ -1.28
SHMT2-216ENST00000554975 Q6ZRX8 168 aa7.07□□□□□ -1.28
SHMT2-216ENST00000554975 TNXBP22105 4242 aa7.07□□□□□ -1.28
SHMT2-216ENST00000554975 IGKV3D-7A0A0C4DH55 119 aa7.06□□□□□ -1.28
SHMT2-216ENST00000554975 SPRR1AP35321 89 aa7.06□□□□□ -1.28
SHMT2-216ENST00000554975 CNBPP62633 177 aaKnown RBP7.06□□□□□ -1.28
SHMT2-216ENST00000554975 BCE1O60756 84 aa7.05□□□□□ -1.28
SHMT2-216ENST00000554975 CXCL6P80162 114 aa7.05□□□□□ -1.28
SHMT2-216ENST00000554975 MRPL55Q7Z7F7 128 aaKnown RBP7.05□□□□□ -1.28
SHMT2-216ENST00000554975 MT1HL1P0DM35 61 aa7.04□□□□□ -1.28
SHMT2-216ENST00000554975 SCXQ7RTU7 201 aa7.04□□□□□ -1.28
SHMT2-216ENST00000554975 C3orf22Q8N5N4 141 aa7.04□□□□□ -1.28
SHMT2-216ENST00000554975 IGLV1-50A0A075B6I6 118 aa7.03□□□□□ -1.28
SHMT2-216ENST00000554975 COX7CP15954 63 aa7.03□□□□□ -1.28
SHMT2-216ENST00000554975 C9orf153Q5TBE3 101 aa7.03□□□□□ -1.28
SHMT2-216ENST00000554975 SMIM20Q8N5G0 67 aa7.03□□□□□ -1.28
SHMT2-216ENST00000554975 CCDC179H3BU77 68 aa7.02□□□□□ -1.29
SHMT2-216ENST00000554975 B5MCH6 92 aa7.01□□□□□ -1.29
SHMT2-216ENST00000554975 Q6ZVQ6 151 aa7.01□□□□□ -1.29
SHMT2-216ENST00000554975 SERP2Q8N6R1 65 aa7.01□□□□□ -1.29
SHMT2-216ENST00000554975 IGLV5-48A0A075B6I7 105 aa7□□□□□ -1.29
SHMT2-216ENST00000554975 KRTAP4-16G5E9R7 235 aaPredicted RBP7□□□□□ -1.29
SHMT2-216ENST00000554975 REG3GQ6UW15 175 aa7□□□□□ -1.29
SHMT2-216ENST00000554975 FAM19A5Q7Z5A7 132 aaPredicted RBP7□□□□□ -1.29
SHMT2-216ENST00000554975 LINC01547P58512 204 aaPredicted RBP6.99□□□□□ -1.29
SHMT2-216ENST00000554975 LINC00474Q9P2X8 69 aa6.99□□□□□ -1.29
SHMT2-216ENST00000554975 F8WEM9 126 aa6.98□□□□□ -1.29
SHMT2-216ENST00000554975 CIRBP-AS1Q8TBR5 109 aa6.98□□□□□ -1.29
SHMT2-216ENST00000554975 CRYGAP11844 174 aa6.97□□□□□ -1.29
SHMT2-216ENST00000554975 UBE2BP63146 152 aa6.97□□□□□ -1.29
SHMT2-216ENST00000554975 A0A087WVE0 104 aa6.95□□□□□ -1.3
SHMT2-216ENST00000554975 RPL37AP8A6NKH3 93 aa6.95□□□□□ -1.3
SHMT2-216ENST00000554975 Q8N377 158 aa6.95□□□□□ -1.3
SHMT2-216ENST00000554975 A0A096LNI7 61 aa6.94□□□□□ -1.3
SHMT2-216ENST00000554975 FAM168BA1KXE4 195 aa6.94□□□□□ -1.3
SHMT2-216ENST00000554975 Q9BRP9 147 aa6.94□□□□□ -1.3
SHMT2-216ENST00000554975 NREPQ16612 68 aa6.93□□□□□ -1.3
SHMT2-216ENST00000554975 Q8NBF4 154 aa6.93□□□□□ -1.3
SHMT2-216ENST00000554975 TRAV7A0A075B6U4 112 aa6.92□□□□□ -1.3
SHMT2-216ENST00000554975 H0Y9J4 135 aa6.92□□□□□ -1.3
SHMT2-216ENST00000554975 RPL37AP61513 92 aaKnown RBP6.92□□□□□ -1.3
SHMT2-216ENST00000554975 C1orf137Q5JT78 98 aa6.92□□□□□ -1.3
SHMT2-216ENST00000554975 FAM19A1Q7Z5A9 133 aa6.92□□□□□ -1.3
SHMT2-216ENST00000554975 C9orf163Q8N9P6 203 aa6.92□□□□□ -1.3
SHMT2-216ENST00000554975 DEFB105AQ8NG35 78 aa6.92□□□□□ -1.3
SHMT2-216ENST00000554975 KRTAP9-2Q9BYQ4 174 aa6.92□□□□□ -1.3
SHMT2-216ENST00000554975 SS18L2Q9UHA2 77 aa6.92□□□□□ -1.3
SHMT2-216ENST00000554975 IGKV2-24A0A0C4DH68 120 aa6.91□□□□□ -1.3
SHMT2-216ENST00000554975 TMEM258P61165 79 aa6.91□□□□□ -1.3
SHMT2-216ENST00000554975 KRTAP7-1Q8IUC3 87 aa6.91□□□□□ -1.3
SHMT2-216ENST00000554975 BPY2O14599 106 aa6.89□□□□□ -1.31
SHMT2-216ENST00000554975 DPH3Q96FX2 82 aa6.89□□□□□ -1.31
SHMT2-216ENST00000554975 SPRR4Q96PI1 79 aa6.89□□□□□ -1.31
SHMT2-216ENST00000554975 IGLV8-61A0A075B6I0 122 aa6.87□□□□□ -1.31
SHMT2-216ENST00000554975 LPAP08519 4548 aa6.87□□□□□ -1.31
SHMT2-216ENST00000554975 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.86□□□□□ -1.31
SHMT2-216ENST00000554975 A0A1W2PNN7 141 aa6.85□□□□□ -1.31
SHMT2-216ENST00000554975 SPRR1BP22528 89 aa6.85□□□□□ -1.31
SHMT2-216ENST00000554975 ST20-AS1Q8NBB2 130 aa6.85□□□□□ -1.31
SHMT2-216ENST00000554975 ERC2-IT1O76042 136 aa6.84□□□□□ -1.31
SHMT2-216ENST00000554975 CHTF8P0CG12 524 aa6.84□□□□□ -1.31
SHMT2-216ENST00000554975 UBE2AP49459 152 aa6.84□□□□□ -1.31
SHMT2-216ENST00000554975 HIGD2AQ9BW72 106 aa6.84□□□□□ -1.31
SHMT2-216ENST00000554975 KRTAP9-6A0A140TA67 174 aa6.83□□□□□ -1.32
SHMT2-216ENST00000554975 A0A1W2PNM2 257 aa6.83□□□□□ -1.32
SHMT2-216ENST00000554975 PANO1I0J062 215 aa6.83□□□□□ -1.32
SHMT2-216ENST00000554975 NDUFC1O43677 76 aa6.83□□□□□ -1.32
SHMT2-216ENST00000554975 IGKV4-1P06312 121 aa6.83□□□□□ -1.32
SHMT2-216ENST00000554975 PRLHP81277 87 aa6.83□□□□□ -1.32
SHMT2-216ENST00000554975 J3KT08 172 aa6.82□□□□□ -1.32
SHMT2-216ENST00000554975 KLKP1Q107X0 134 aa6.81□□□□□ -1.32
SHMT2-216ENST00000554975 SMIM29Q86T20 159 aa6.81□□□□□ -1.32
SHMT2-216ENST00000554975 ZNF706Q9Y5V0 76 aaPredicted RBP6.81□□□□□ -1.32
SHMT2-216ENST00000554975 ATP5EP56381 51 aaPredicted RBP6.8□□□□□ -1.32
SHMT2-216ENST00000554975 PHF5AQ7RTV0 110 aaKnown RBP6.8□□□□□ -1.32
SHMT2-216ENST00000554975 SPACA4Q8TDM5 124 aa6.8□□□□□ -1.32
SHMT2-216ENST00000554975 C20orf197Q8N268 126 aa6.79□□□□□ -1.32
SHMT2-216ENST00000554975 IGFL1Q6UW32 110 aa6.78□□□□□ -1.32
SHMT2-216ENST00000554975 RPS28P62857 69 aaKnown RBP6.77□□□□□ -1.33
SHMT2-216ENST00000554975 PLAC8Q9NZF1 115 aa6.76□□□□□ -1.33
SHMT2-216ENST00000554975 FAM236DA0A1B0GTK5 79 aa6.75□□□□□ -1.33
SHMT2-216ENST00000554975 FAM236CP0DP71 79 aa6.75□□□□□ -1.33
SHMT2-216ENST00000554975 MUC2Q02817 5179 aa6.74□□□□□ -1.33
SHMT2-216ENST00000554975 KRTAP13-1Q8IUC0 172 aa6.74□□□□□ -1.33
SHMT2-216ENST00000554975 FAT4Q6V0I7 4981 aa6.74□□□□□ -1.33
SHMT2-216ENST00000554975 OCR1Q9BZK8 76 aa6.73□□□□□ -1.33
SHMT2-216ENST00000554975 A0A087WSZ3 146 aa6.72□□□□□ -1.33
SHMT2-216ENST00000554975 Q8N9L7 120 aa6.72□□□□□ -1.33
SHMT2-216ENST00000554975 TMEM254Q8TBM7 123 aa6.72□□□□□ -1.33
SHMT2-216ENST00000554975 HCG22E2RYF7 251 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms