RNA–Protein interactions for RNA: ENST00000554607.1

FOXA1-204, Transcript of forkhead box A1, humanhuman

TSL 3

Gene FOXA1, Length 789 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-204ENST00000554607 HIST1H2BKO60814 126 aa12.47□□□□□ -0.41
FOXA1-204ENST00000554607 HIST1H2BJP06899 126 aa12.47□□□□□ -0.41
FOXA1-204ENST00000554607 HIST1H2BOP23527 126 aa12.47□□□□□ -0.41
FOXA1-204ENST00000554607 HIST1H2BBP33778 126 aa12.47□□□□□ -0.41
FOXA1-204ENST00000554607 HIST1H2BDP58876 126 aa12.47□□□□□ -0.41
FOXA1-204ENST00000554607 HIST1H2BCP62807 126 aa12.47□□□□□ -0.41
FOXA1-204ENST00000554607 HIST2H2BEQ16778 126 aa12.47□□□□□ -0.41
FOXA1-204ENST00000554607 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.47□□□□□ -0.41
FOXA1-204ENST00000554607 HIST1H2BHQ93079 126 aa12.47□□□□□ -0.41
FOXA1-204ENST00000554607 HIST1H2BNQ99877 126 aa12.47□□□□□ -0.41
FOXA1-204ENST00000554607 HIST1H2BMQ99879 126 aa12.47□□□□□ -0.41
FOXA1-204ENST00000554607 SLC7A5P1Q8MH63 180 aa12.46□□□□□ -0.41
FOXA1-204ENST00000554607 KRTAP9-8Q9BYQ0 159 aa12.46□□□□□ -0.41
FOXA1-204ENST00000554607 IGFL1Q6UW32 110 aa12.45□□□□□ -0.42
FOXA1-204ENST00000554607 LINC00575Q6W349 94 aa12.44□□□□□ -0.42
FOXA1-204ENST00000554607 OCIAD2Q56VL3 154 aa12.43□□□□□ -0.42
FOXA1-204ENST00000554607 hADV29S1A0JD25 119 aa12.42□□□□□ -0.42
FOXA1-204ENST00000554607 ANKRD39Q53RE8 183 aa12.42□□□□□ -0.42
FOXA1-204ENST00000554607 Q6ZQY7 126 aa12.42□□□□□ -0.42
FOXA1-204ENST00000554607 KRTDAPP60985 99 aa12.41□□□□□ -0.42
FOXA1-204ENST00000554607 Q96NJ1 140 aa12.41□□□□□ -0.42
FOXA1-204ENST00000554607 LST1O00453 97 aa12.4□□□□□ -0.42
FOXA1-204ENST00000554607 TRBV20-1A0A075B6N2 111 aa12.39□□□□□ -0.43
FOXA1-204ENST00000554607 C20orf166-AS1Q96NR2 134 aa12.34□□□□□ -0.43
FOXA1-204ENST00000554607 PPDPFLQ8WWR9 84 aa12.33□□□□□ -0.44
FOXA1-204ENST00000554607 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.32□□□□□ -0.44
FOXA1-204ENST00000554607 ATOH7Q8N100 152 aa12.31□□□□□ -0.44
FOXA1-204ENST00000554607 SNHG12Q9BXW3 62 aa12.31□□□□□ -0.44
FOXA1-204ENST00000554607 A8MUU9 505 aa12.3□□□□□ -0.44
FOXA1-204ENST00000554607 SCGB1D1O95968 90 aa12.3□□□□□ -0.44
FOXA1-204ENST00000554607 SS18L2Q9UHA2 77 aa12.29□□□□□ -0.44
FOXA1-204ENST00000554607 FCGBPQ9Y6R7 5405 aaPredicted RBP12.29□□□□□ -0.44
FOXA1-204ENST00000554607 COA6Q5JTJ3 125 aaKnown RBP12.28□□□□□ -0.44
FOXA1-204ENST00000554607 SNRPEP62304 92 aaKnown RBP12.26□□□□□ -0.45
FOXA1-204ENST00000554607 H3BUT2 72 aa12.24□□□□□ -0.45
FOXA1-204ENST00000554607 BVES-AS1Q5T3Y7 98 aa12.22□□□□□ -0.45
FOXA1-204ENST00000554607 MT2AP02795 61 aa12.21□□□□□ -0.45
FOXA1-204ENST00000554607 TEN1Q86WV5 123 aa12.18□□□□□ -0.46
FOXA1-204ENST00000554607 FAM236DA0A1B0GTK5 79 aa12.17□□□□□ -0.46
FOXA1-204ENST00000554607 FAM236CP0DP71 79 aa12.17□□□□□ -0.46
FOXA1-204ENST00000554607 KRTAP19-1Q8IUB9 90 aa12.17□□□□□ -0.46
FOXA1-204ENST00000554607 S100A1P23297 94 aa12.14□□□□□ -0.47
FOXA1-204ENST00000554607 C12orf57Q99622 126 aa12.14□□□□□ -0.47
FOXA1-204ENST00000554607 LCE2BO14633 110 aa12.13□□□□□ -0.47
FOXA1-204ENST00000554607 A0A087WSZ3 146 aa12.11□□□□□ -0.47
FOXA1-204ENST00000554607 SNCGO76070 127 aa12.11□□□□□ -0.47
FOXA1-204ENST00000554607 MT1FP04733 61 aa12.11□□□□□ -0.47
FOXA1-204ENST00000554607 DSCR10P59022 87 aa12.11□□□□□ -0.47
FOXA1-204ENST00000554607 RBM12B-AS1Q9P1G2 102 aa12.1□□□□□ -0.47
FOXA1-204ENST00000554607 HSBP1L1C9JCN9 74 aa12.09□□□□□ -0.47
FOXA1-204ENST00000554607 KRTAP10-10P60014 251 aa12.09□□□□□ -0.47
FOXA1-204ENST00000554607 KRTAP9-3Q9BYQ3 159 aa12.09□□□□□ -0.47
FOXA1-204ENST00000554607 NDUFV3P56181 108 aaKnown RBP12.07□□□□□ -0.48
FOXA1-204ENST00000554607 KRTAP16-1A8MUX0 517 aa12.05□□□□□ -0.48
FOXA1-204ENST00000554607 MACF1Q9UPN3 7388 aaKnown RBP12.05□□□□□ -0.48
FOXA1-204ENST00000554607 LINC00313P59037 77 aa12.04□□□□□ -0.48
FOXA1-204ENST00000554607 SIGMAR1Q99720 223 aa12.03□□□□□ -0.48
FOXA1-204ENST00000554607 MPLKIPQ8TAP9 179 aa12.02□□□□□ -0.49
FOXA1-204ENST00000554607 HIST1H4GQ99525 98 aa12.02□□□□□ -0.49
FOXA1-204ENST00000554607 SYNE2Q8WXH0 6885 aaKnown RBP12.02□□□□□ -0.49
FOXA1-204ENST00000554607 H0YGX0 51 aa12□□□□□ -0.49
FOXA1-204ENST00000554607 LINC00846Q9NV44 126 aa12□□□□□ -0.49
FOXA1-204ENST00000554607 H3BMG7 143 aa11.99□□□□□ -0.49
FOXA1-204ENST00000554607 GHRHP01286 108 aa11.99□□□□□ -0.49
FOXA1-204ENST00000554607 HRES1P13985 223 aa11.99□□□□□ -0.49
FOXA1-204ENST00000554607 IGKV4-1P06312 121 aa11.94□□□□□ -0.5
FOXA1-204ENST00000554607 RAB37Q96AX2 223 aa11.93□□□□□ -0.5
FOXA1-204ENST00000554607 FAM218AQ96MZ4 157 aa11.92□□□□□ -0.5
FOXA1-204ENST00000554607 A0A1W2PNM2 257 aa11.91□□□□□ -0.5
FOXA1-204ENST00000554607 FABP2P12104 132 aa11.91□□□□□ -0.5
FOXA1-204ENST00000554607 NOTCH2NLQ7Z3S9 236 aa11.91□□□□□ -0.5
FOXA1-204ENST00000554607 S100A2P29034 98 aa11.9□□□□□ -0.5
FOXA1-204ENST00000554607 MTURNQ8N3F0 131 aa11.9□□□□□ -0.5
FOXA1-204ENST00000554607 HIST1H2BLQ99880 126 aa11.9□□□□□ -0.5
FOXA1-204ENST00000554607 A0A1B0GX51 115 aa11.88□□□□□ -0.51
FOXA1-204ENST00000554607 HIST3H2BBQ8N257 126 aa11.88□□□□□ -0.51
FOXA1-204ENST00000554607 COX8AP10176 69 aa11.85□□□□□ -0.51
FOXA1-204ENST00000554607 A0A0B4J2C4 111 aa11.84□□□□□ -0.51
FOXA1-204ENST00000554607 TRBV7-4A0A0J9YYF1 115 aa11.84□□□□□ -0.51
FOXA1-204ENST00000554607 KRTAP19-6Q3LI70 58 aa11.83□□□□□ -0.52
FOXA1-204ENST00000554607 ANKRD29Q8N6D5 301 aa11.83□□□□□ -0.52
FOXA1-204ENST00000554607 DLEU1O43261 78 aa11.81□□□□□ -0.52
FOXA1-204ENST00000554607 IGHV6-1A0A0B4J1U7 121 aa11.8□□□□□ -0.52
FOXA1-204ENST00000554607 LINC00472Q9H8W2 130 aa11.79□□□□□ -0.52
FOXA1-204ENST00000554607 DEFB116Q30KQ4 102 aa11.78□□□□□ -0.52
FOXA1-204ENST00000554607 H3BQ85 93 aa11.73□□□□□ -0.53
FOXA1-204ENST00000554607 HIGD1BQ9P298 99 aa11.73□□□□□ -0.53
FOXA1-204ENST00000554607 C8orf87E5RJ46 101 aa11.72□□□□□ -0.53
FOXA1-204ENST00000554607 PRO1854Q9UHT4 67 aa11.72□□□□□ -0.53
FOXA1-204ENST00000554607 A8MWP4 228 aa11.7□□□□□ -0.54
FOXA1-204ENST00000554607 TRACP01848 142 aa11.7□□□□□ -0.54
FOXA1-204ENST00000554607 ORMDL1Q9P0S3 153 aa11.7□□□□□ -0.54
FOXA1-204ENST00000554607 DNAL4O96015 105 aa11.69□□□□□ -0.54
FOXA1-204ENST00000554607 CCKP06307 115 aa11.69□□□□□ -0.54
FOXA1-204ENST00000554607 S100A6P06703 90 aa11.69□□□□□ -0.54
FOXA1-204ENST00000554607 SPINK7P58062 85 aa11.69□□□□□ -0.54
FOXA1-204ENST00000554607 ZCCHC13Q8WW36 166 aaKnown RBP11.69□□□□□ -0.54
FOXA1-204ENST00000554607 A0A1B0GV72 72 aa11.68□□□□□ -0.54
FOXA1-204ENST00000554607 C14orf144Q96I85 54 aa11.68□□□□□ -0.54
FOXA1-204ENST00000554607 A0A1B0GVX0 72 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms