RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 TRAV22A0A0B4J277 110 aa4.99□□□□□ -1.61
LIMA1-216ENST00000552909 C1orf134Q5TEV5 83 aa4.99□□□□□ -1.61
LIMA1-216ENST00000552909 SMIM29Q86T20 159 aa4.99□□□□□ -1.61
LIMA1-216ENST00000552909 DYNC1H1Q14204 4646 aaKnown RBP4.99□□□□□ -1.61
LIMA1-216ENST00000552909 DNAH5Q8TE73 4624 aa4.98□□□□□ -1.61
LIMA1-216ENST00000552909 C10orf25Q5T742 122 aa4.98□□□□□ -1.61
LIMA1-216ENST00000552909 UNQ6190/PRO20217Q6UXQ8 127 aa4.98□□□□□ -1.61
LIMA1-216ENST00000552909 SPAG11BQ08648 103 aa4.98□□□□□ -1.61
LIMA1-216ENST00000552909 KLK12Q9UKR0 248 aa4.98□□□□□ -1.61
LIMA1-216ENST00000552909 LRP1BQ9NZR2 4599 aa4.97□□□□□ -1.61
LIMA1-216ENST00000552909 A0A1B0GVY2 172 aa4.97□□□□□ -1.61
LIMA1-216ENST00000552909 TNP2Q05952 138 aa4.97□□□□□ -1.61
LIMA1-216ENST00000552909 REG3AQ06141 175 aa4.97□□□□□ -1.61
LIMA1-216ENST00000552909 ZCCHC13Q8WW36 166 aaKnown RBP4.96□□□□□ -1.62
LIMA1-216ENST00000552909 DNAH10OSP0CZ25 163 aa4.95□□□□□ -1.62
LIMA1-216ENST00000552909 CYP4F30PQ9H0H9 118 aa4.95□□□□□ -1.62
LIMA1-216ENST00000552909 PSCAO43653 123 aa4.95□□□□□ -1.62
LIMA1-216ENST00000552909 UBE2BP63146 152 aa4.95□□□□□ -1.62
LIMA1-216ENST00000552909 Q6ZRN7 208 aaPredicted RBP4.95□□□□□ -1.62
LIMA1-216ENST00000552909 MRPL55Q7Z7F7 128 aaKnown RBP4.95□□□□□ -1.62
LIMA1-216ENST00000552909 XAGE1AQ9HD64 81 aa4.95□□□□□ -1.62
LIMA1-216ENST00000552909 ETDCA0A1B0GVM5 59 aa4.94□□□□□ -1.62
LIMA1-216ENST00000552909 A8MUN3 132 aa4.94□□□□□ -1.62
LIMA1-216ENST00000552909 SYCNQ0VAF6 134 aa4.94□□□□□ -1.62
LIMA1-216ENST00000552909 GVQW2A0A096LPI5 108 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-216ENST00000552909 LINC01556Q5JQF7 62 aa4.94□□□□□ -1.62
LIMA1-216ENST00000552909 LINC00528Q8N1L1 170 aa4.94□□□□□ -1.62
LIMA1-216ENST00000552909 PRR34Q9NV39 138 aa4.94□□□□□ -1.62
LIMA1-216ENST00000552909 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-216ENST00000552909 PRR4Q16378 134 aa4.92□□□□□ -1.62
LIMA1-216ENST00000552909 KRTAP3-3Q9BYR6 98 aa4.92□□□□□ -1.62
LIMA1-216ENST00000552909 KRTAP3-2Q9BYR7 98 aa4.92□□□□□ -1.62
LIMA1-216ENST00000552909 A0A1B0GW54 56 aa4.92□□□□□ -1.62
LIMA1-216ENST00000552909 NDUFB1O75438 58 aa4.92□□□□□ -1.62
LIMA1-216ENST00000552909 UBE2AP49459 152 aa4.92□□□□□ -1.62
LIMA1-216ENST00000552909 KTN1-AS1Q86SY8 53 aa4.92□□□□□ -1.62
LIMA1-216ENST00000552909 C6orf48Q9UBA6 75 aa4.92□□□□□ -1.62
LIMA1-216ENST00000552909 HERC2O95714 4834 aa4.91□□□□□ -1.62
LIMA1-216ENST00000552909 M0R378 163 aa4.91□□□□□ -1.62
LIMA1-216ENST00000552909 VPREB1P12018 145 aa4.91□□□□□ -1.62
LIMA1-216ENST00000552909 Q5VV11 94 aa4.91□□□□□ -1.62
LIMA1-216ENST00000552909 APOBP04114 4563 aaKnown RBP4.91□□□□□ -1.62
LIMA1-216ENST00000552909 RYR1P21817 5038 aa4.91□□□□□ -1.62
LIMA1-216ENST00000552909 KRTAP10-2P60368 255 aa4.91□□□□□ -1.62
LIMA1-216ENST00000552909 HSPG2P98160 4391 aa4.9□□□□□ -1.62
LIMA1-216ENST00000552909 IGLV5-48A0A075B6I7 105 aa4.9□□□□□ -1.62
LIMA1-216ENST00000552909 IGKV2D-24A0A075B6R9 120 aa4.89□□□□□ -1.63
LIMA1-216ENST00000552909 A8MU10 97 aa4.89□□□□□ -1.63
LIMA1-216ENST00000552909 CHKB-CPT1BH3BT56 60 aa4.89□□□□□ -1.63
LIMA1-216ENST00000552909 DEFB105AQ8NG35 78 aa4.89□□□□□ -1.63
LIMA1-216ENST00000552909 ST20-AS1Q8NBB2 130 aa4.89□□□□□ -1.63
LIMA1-216ENST00000552909 RBM12B-AS1Q9P1G2 102 aa4.89□□□□□ -1.63
LIMA1-216ENST00000552909 LIMD2Q9BT23 127 aa4.88□□□□□ -1.63
LIMA1-216ENST00000552909 A0A087WTM6 91 aa4.88□□□□□ -1.63
LIMA1-216ENST00000552909 DSCR10P59022 87 aa4.88□□□□□ -1.63
LIMA1-216ENST00000552909 KRTAP26-1Q6PEX3 210 aa4.88□□□□□ -1.63
LIMA1-216ENST00000552909 Q8N377 158 aa4.88□□□□□ -1.63
LIMA1-216ENST00000552909 A0A1W2PNM2 257 aa4.87□□□□□ -1.63
LIMA1-216ENST00000552909 C16orf90A8MZG2 172 aa4.87□□□□□ -1.63
LIMA1-216ENST00000552909 HCG22E2RYF7 251 aa4.87□□□□□ -1.63
LIMA1-216ENST00000552909 K7EQZ3 153 aa4.87□□□□□ -1.63
LIMA1-216ENST00000552909 NDUFS5O43920 106 aa4.87□□□□□ -1.63
LIMA1-216ENST00000552909 MP68P56378 58 aa4.87□□□□□ -1.63
LIMA1-216ENST00000552909 ATP11AUNQ6ZP68 121 aa4.87□□□□□ -1.63
LIMA1-216ENST00000552909 SPTSSBQ8NFR3 76 aa4.87□□□□□ -1.63
LIMA1-216ENST00000552909 CAMK2N2Q96S95 79 aa4.87□□□□□ -1.63
LIMA1-216ENST00000552909 C1orf137Q5JT78 98 aa4.86□□□□□ -1.63
LIMA1-216ENST00000552909 Q8N9P0 234 aaPredicted RBP4.86□□□□□ -1.63
LIMA1-216ENST00000552909 Q8NBF4 154 aa4.86□□□□□ -1.63
LIMA1-216ENST00000552909 PRR15LQ9BU68 103 aa4.86□□□□□ -1.63
LIMA1-216ENST00000552909 FAT1Q14517 4588 aa4.86□□□□□ -1.63
LIMA1-216ENST00000552909 LINC00208Q96KT6 92 aa4.85□□□□□ -1.63
LIMA1-216ENST00000552909 PCLOQ9Y6V0 5065 aa4.85□□□□□ -1.63
LIMA1-216ENST00000552909 DNAH8Q96JB1 4490 aa4.85□□□□□ -1.63
LIMA1-216ENST00000552909 SPANXA2-OT1Q8N9U9 137 aa4.84□□□□□ -1.63
LIMA1-216ENST00000552909 SPRR4Q96PI1 79 aa4.84□□□□□ -1.64
LIMA1-216ENST00000552909 Q9BRP9 147 aa4.84□□□□□ -1.64
LIMA1-216ENST00000552909 KRTAP17-1Q9BYP8 105 aa4.84□□□□□ -1.64
LIMA1-216ENST00000552909 KCNQ1DNQ9H478 68 aa4.84□□□□□ -1.64
LIMA1-216ENST00000552909 Q75L30 129 aa4.83□□□□□ -1.64
LIMA1-216ENST00000552909 PHF5AQ7RTV0 110 aaKnown RBP4.83□□□□□ -1.64
LIMA1-216ENST00000552909 C15orf56Q8N910 161 aa4.83□□□□□ -1.64
LIMA1-216ENST00000552909 DHRS4-AS1Q9P1J3 65 aa4.83□□□□□ -1.64
LIMA1-216ENST00000552909 ABCA13Q86UQ4 5058 aa4.83□□□□□ -1.64
LIMA1-216ENST00000552909 A6NED7 52 aa4.82□□□□□ -1.64
LIMA1-216ENST00000552909 A6NN06 94 aa4.82□□□□□ -1.64
LIMA1-216ENST00000552909 KRTAP10-1P60331 282 aa4.82□□□□□ -1.64
LIMA1-216ENST00000552909 LCA10Q71F78 164 aa4.82□□□□□ -1.64
LIMA1-216ENST00000552909 NKAPP1Q8N9T2 125 aa4.82□□□□□ -1.64
LIMA1-216ENST00000552909 WFDC13Q8IUB5 93 aa4.81□□□□□ -1.64
LIMA1-216ENST00000552909 IGLV5-52A0A0A0MRZ9 124 aa4.8□□□□□ -1.64
LIMA1-216ENST00000552909 LOC101927531A0A1B0GV80 90 aa4.8□□□□□ -1.64
LIMA1-216ENST00000552909 H3BPC8 53 aa4.8□□□□□ -1.64
LIMA1-216ENST00000552909 Q6ZRX8 168 aa4.8□□□□□ -1.64
LIMA1-216ENST00000552909 C7orf33Q8WU49 177 aa4.8□□□□□ -1.64
LIMA1-216ENST00000552909 H0Y9P7 68 aa4.79□□□□□ -1.64
LIMA1-216ENST00000552909 CDK2AP2O75956 126 aa4.79□□□□□ -1.64
LIMA1-216ENST00000552909 DEFB116Q30KQ4 102 aa4.79□□□□□ -1.64
LIMA1-216ENST00000552909 C7orf65Q6ZTY9 151 aa4.79□□□□□ -1.64
LIMA1-216ENST00000552909 KRTAP4-5Q9BYR2 181 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms