RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 PLECQ15149 4684 aaKnown RBP4.75□□□□□ -1.65
LIMA1-213ENST00000552720 A0A096LNI7 61 aa4.75□□□□□ -1.65
LIMA1-213ENST00000552720 REG3GQ6UW15 175 aa4.75□□□□□ -1.65
LIMA1-213ENST00000552720 DSCR10P59022 87 aa4.74□□□□□ -1.65
LIMA1-213ENST00000552720 DEFB116Q30KQ4 102 aa4.74□□□□□ -1.65
LIMA1-213ENST00000552720 K7EQZ3 153 aa4.74□□□□□ -1.65
LIMA1-213ENST00000552720 LINC00476Q8WZB0 136 aa4.74□□□□□ -1.65
LIMA1-213ENST00000552720 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.73□□□□□ -1.65
LIMA1-213ENST00000552720 A0A0U1RQV1 116 aa4.73□□□□□ -1.65
LIMA1-213ENST00000552720 FP248Q71RG6 208 aaPredicted RBP4.73□□□□□ -1.65
LIMA1-213ENST00000552720 SPRR4Q96PI1 79 aa4.73□□□□□ -1.65
LIMA1-213ENST00000552720 LINC00474Q9P2X8 69 aa4.73□□□□□ -1.65
LIMA1-213ENST00000552720 NDUFC1O43677 76 aa4.72□□□□□ -1.65
LIMA1-213ENST00000552720 CHTF8P0CG12 524 aa4.72□□□□□ -1.65
LIMA1-213ENST00000552720 KRTAP11-1Q8IUC1 163 aa4.72□□□□□ -1.65
LIMA1-213ENST00000552720 FAM229BQ4G0N7 80 aa4.72□□□□□ -1.65
LIMA1-213ENST00000552720 IGFL1Q6UW32 110 aa4.72□□□□□ -1.65
LIMA1-213ENST00000552720 DYNC2H1Q8NCM8 4307 aaKnown RBP4.72□□□□□ -1.65
LIMA1-213ENST00000552720 C16orf90A8MZG2 172 aa4.7□□□□□ -1.66
LIMA1-213ENST00000552720 PSCAO43653 123 aa4.7□□□□□ -1.66
LIMA1-213ENST00000552720 PHF5AQ7RTV0 110 aaKnown RBP4.7□□□□□ -1.66
LIMA1-213ENST00000552720 A0A1B0GW54 56 aa4.69□□□□□ -1.66
LIMA1-213ENST00000552720 A0A087WSZ3 146 aa4.69□□□□□ -1.66
LIMA1-213ENST00000552720 A0A0A0MQY5 61 aa4.69□□□□□ -1.66
LIMA1-213ENST00000552720 RPL37AP61513 92 aaKnown RBP4.69□□□□□ -1.66
LIMA1-213ENST00000552720 SMIM26A0A096LP01 95 aa4.68□□□□□ -1.66
LIMA1-213ENST00000552720 PLA2G1BP04054 148 aaKnown RBP4.68□□□□□ -1.66
LIMA1-213ENST00000552720 V9GYY9 64 aa4.68□□□□□ -1.66
LIMA1-213ENST00000552720 WFDC13Q8IUB5 93 aa4.68□□□□□ -1.66
LIMA1-213ENST00000552720 CNBPP62633 177 aaKnown RBP4.67□□□□□ -1.66
LIMA1-213ENST00000552720 LINC00336Q6ZUF6 198 aa4.67□□□□□ -1.66
LIMA1-213ENST00000552720 UBE2DNLQ8IWF7 75 aa4.67□□□□□ -1.66
LIMA1-213ENST00000552720 LCE6AA0A183 80 aa4.67□□□□□ -1.66
LIMA1-213ENST00000552720 HCG22E2RYF7 251 aa4.67□□□□□ -1.66
LIMA1-213ENST00000552720 ATP5EP56381 51 aaPredicted RBP4.67□□□□□ -1.66
LIMA1-213ENST00000552720 MPLKIPQ8TAP9 179 aa4.67□□□□□ -1.66
LIMA1-213ENST00000552720 STARD9Q9P2P6 4700 aa4.66□□□□□ -1.66
LIMA1-213ENST00000552720 UBE2AP49459 152 aa4.66□□□□□ -1.66
LIMA1-213ENST00000552720 PANO1I0J062 215 aa4.66□□□□□ -1.66
LIMA1-213ENST00000552720 LRCOL1A6NCL2 159 aa4.65□□□□□ -1.66
LIMA1-213ENST00000552720 PRR4Q16378 134 aa4.65□□□□□ -1.66
LIMA1-213ENST00000552720 APLNQ9ULZ1 77 aa4.65□□□□□ -1.66
LIMA1-213ENST00000552720 FBN3Q75N90 2809 aa4.65□□□□□ -1.67
LIMA1-213ENST00000552720 VPS13DQ5THJ4 4388 aa4.65□□□□□ -1.67
LIMA1-213ENST00000552720 DNAH8Q96JB1 4490 aa4.65□□□□□ -1.67
LIMA1-213ENST00000552720 ZCCHC13Q8WW36 166 aaKnown RBP4.65□□□□□ -1.67
LIMA1-213ENST00000552720 IGLV8-61A0A075B6I0 122 aa4.64□□□□□ -1.67
LIMA1-213ENST00000552720 DNAH2Q9P225 4427 aa4.64□□□□□ -1.67
LIMA1-213ENST00000552720 HECTD4Q9Y4D8 3996 aa4.64□□□□□ -1.67
LIMA1-213ENST00000552720 FRAS1Q86XX4 4008 aa4.64□□□□□ -1.67
LIMA1-213ENST00000552720 TGP01266 2768 aa4.63□□□□□ -1.67
LIMA1-213ENST00000552720 PRKDCP78527 4128 aaKnown RBP4.62□□□□□ -1.67
LIMA1-213ENST00000552720 C9orf163Q8N9P6 203 aa4.62□□□□□ -1.67
LIMA1-213ENST00000552720 PRO0628Q9UI54 55 aa4.62□□□□□ -1.67
LIMA1-213ENST00000552720 hDV103S1A0JD37 113 aa4.61□□□□□ -1.67
LIMA1-213ENST00000552720 C1orf64Q8NEQ6 169 aa4.61□□□□□ -1.67
LIMA1-213ENST00000552720 DNAH17Q9UFH2 4485 aa4.61□□□□□ -1.67
LIMA1-213ENST00000552720 KMT2AQ03164 3969 aa4.61□□□□□ -1.67
LIMA1-213ENST00000552720 KRTAP29-1A8MX34 341 aaPredicted RBP4.61□□□□□ -1.67
LIMA1-213ENST00000552720 SPRR1BP22528 89 aa4.6□□□□□ -1.67
LIMA1-213ENST00000552720 C14orf177Q52M58 125 aa4.6□□□□□ -1.67
LIMA1-213ENST00000552720 LINC00472Q9H8W2 130 aa4.6□□□□□ -1.67
LIMA1-213ENST00000552720 LINC00208Q96KT6 92 aa4.59□□□□□ -1.67
LIMA1-213ENST00000552720 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.59□□□□□ -1.67
LIMA1-213ENST00000552720 MEGF8Q7Z7M0 2845 aa4.58□□□□□ -1.68
LIMA1-213ENST00000552720 NBDYA0A0U1RRE5 68 aa4.58□□□□□ -1.68
LIMA1-213ENST00000552720 H0Y9J4 135 aa4.58□□□□□ -1.68
LIMA1-213ENST00000552720 CASC2Q6XLA1 102 aa4.58□□□□□ -1.68
LIMA1-213ENST00000552720 Q6ZRN7 208 aaPredicted RBP4.58□□□□□ -1.68
LIMA1-213ENST00000552720 PRR15Q8IV56 129 aa4.58□□□□□ -1.68
LIMA1-213ENST00000552720 BRK1Q8WUW1 75 aa4.58□□□□□ -1.68
LIMA1-213ENST00000552720 B9D2Q9BPU9 175 aa4.58□□□□□ -1.68
LIMA1-213ENST00000552720 IGLV9-49A0A0B4J1Y8 123 aa4.57□□□□□ -1.68
LIMA1-213ENST00000552720 KRTAP13-1Q8IUC0 172 aa4.57□□□□□ -1.68
LIMA1-213ENST00000552720 A8MWP4 228 aa4.57□□□□□ -1.68
LIMA1-213ENST00000552720 TRAV22A0A0B4J277 110 aa4.56□□□□□ -1.68
LIMA1-213ENST00000552720 H0Y9P7 68 aa4.56□□□□□ -1.68
LIMA1-213ENST00000552720 MP68P56378 58 aa4.56□□□□□ -1.68
LIMA1-213ENST00000552720 MMP24-AS1A0A0U1RRL7 71 aa4.54□□□□□ -1.68
LIMA1-213ENST00000552720 SPACA4Q8TDM5 124 aa4.54□□□□□ -1.68
LIMA1-213ENST00000552720 CYP4F30PQ9H0H9 118 aa4.54□□□□□ -1.68
LIMA1-213ENST00000552720 ANAPC11Q9NYG5 84 aa4.54□□□□□ -1.68
LIMA1-213ENST00000552720 DNAH6Q9C0G6 4158 aa4.54□□□□□ -1.68
LIMA1-213ENST00000552720 Q96NJ1 140 aa4.54□□□□□ -1.68
LIMA1-213ENST00000552720 PSPHP1O15172 72 aa4.53□□□□□ -1.68
LIMA1-213ENST00000552720 MOBPQ13875 183 aa4.53□□□□□ -1.68
LIMA1-213ENST00000552720 PKIGQ9Y2B9 76 aa4.53□□□□□ -1.68
LIMA1-213ENST00000552720 NDUFB1O75438 58 aa4.52□□□□□ -1.69
LIMA1-213ENST00000552720 A0A087WTM6 91 aa4.51□□□□□ -1.69
LIMA1-213ENST00000552720 Q1T7F1 81 aa4.51□□□□□ -1.69
LIMA1-213ENST00000552720 NUPR2A6NF83 97 aa4.51□□□□□ -1.69
LIMA1-213ENST00000552720 PSORS1C2Q9UIG4 136 aa4.51□□□□□ -1.69
LIMA1-213ENST00000552720 DNAH11Q96DT5 4516 aa4.51□□□□□ -1.69
LIMA1-213ENST00000552720 ALMS1Q8TCU4 4167 aa4.5□□□□□ -1.69
LIMA1-213ENST00000552720 WWC2-AS2Q96NR7 200 aa4.5□□□□□ -1.69
LIMA1-213ENST00000552720 RTL8CO15255 209 aa4.49□□□□□ -1.69
LIMA1-213ENST00000552720 PCOTHQ58A44 107 aa4.49□□□□□ -1.69
LIMA1-213ENST00000552720 C1orf195Q5TG92 126 aa4.49□□□□□ -1.69
LIMA1-213ENST00000552720 DNAH5Q8TE73 4624 aa4.49□□□□□ -1.69
LIMA1-213ENST00000552720 A0A087X002 238 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms