RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 SMIM29Q86T20 159 aa3.49□□□□□ -1.85
LIMA1-212ENST00000552491 CSMD3Q7Z407 3707 aa3.48□□□□□ -1.85
LIMA1-212ENST00000552491 C1orf137Q5JT78 98 aa3.48□□□□□ -1.85
LIMA1-212ENST00000552491 FAM30AQ9NZY2 134 aa3.48□□□□□ -1.85
LIMA1-212ENST00000552491 IGLV1-50A0A075B6I6 118 aa3.47□□□□□ -1.85
LIMA1-212ENST00000552491 IGLV5-37A0A075B6J1 123 aa3.47□□□□□ -1.85
LIMA1-212ENST00000552491 A0A0G2JQZ4 141 aa3.47□□□□□ -1.85
LIMA1-212ENST00000552491 LCE6AA0A183 80 aa3.47□□□□□ -1.85
LIMA1-212ENST00000552491 A0A1W2PNN7 141 aa3.47□□□□□ -1.85
LIMA1-212ENST00000552491 SPRR1AP35321 89 aa3.47□□□□□ -1.85
LIMA1-212ENST00000552491 KRTAP10-2P60368 255 aa3.47□□□□□ -1.85
LIMA1-212ENST00000552491 Q8NBF4 154 aa3.47□□□□□ -1.85
LIMA1-212ENST00000552491 SPRR4Q96PI1 79 aa3.47□□□□□ -1.85
LIMA1-212ENST00000552491 NOTCH1P46531 2555 aa3.47□□□□□ -1.85
LIMA1-212ENST00000552491 STAB1Q9NY15 2570 aa3.47□□□□□ -1.85
LIMA1-212ENST00000552491 ETDCA0A1B0GVM5 59 aa3.47□□□□□ -1.85
LIMA1-212ENST00000552491 DSCR10P59022 87 aa3.47□□□□□ -1.85
LIMA1-212ENST00000552491 HUWE1Q7Z6Z7 4374 aaKnown RBP3.46□□□□□ -1.86
LIMA1-212ENST00000552491 DEFB131BA0A096LNP1 70 aa3.46□□□□□ -1.86
LIMA1-212ENST00000552491 DNAH10OSP0CZ25 163 aa3.46□□□□□ -1.86
LIMA1-212ENST00000552491 MPLKIPQ8TAP9 179 aa3.46□□□□□ -1.86
LIMA1-212ENST00000552491 K7EQZ3 153 aa3.46□□□□□ -1.86
LIMA1-212ENST00000552491 DNAH9Q9NYC9 4486 aa3.45□□□□□ -1.86
LIMA1-212ENST00000552491 SRRM2Q9UQ35 2752 aaKnown RBP3.45□□□□□ -1.86
LIMA1-212ENST00000552491 FBN1P35555 2871 aaKnown RBP3.45□□□□□ -1.86
LIMA1-212ENST00000552491 MRPL55Q7Z7F7 128 aaKnown RBP3.44□□□□□ -1.86
LIMA1-212ENST00000552491 C11orf45Q8TAV5 145 aa3.44□□□□□ -1.86
LIMA1-212ENST00000552491 ZCCHC13Q8WW36 166 aaKnown RBP3.44□□□□□ -1.86
LIMA1-212ENST00000552491 LRCOL1A6NCL2 159 aa3.44□□□□□ -1.86
LIMA1-212ENST00000552491 DEFB116Q30KQ4 102 aa3.44□□□□□ -1.86
LIMA1-212ENST00000552491 LINC00588Q9Y4M8 146 aa3.44□□□□□ -1.86
LIMA1-212ENST00000552491 hDV103S1A0JD37 113 aa3.43□□□□□ -1.86
LIMA1-212ENST00000552491 UBE2BP63146 152 aa3.43□□□□□ -1.86
LIMA1-212ENST00000552491 BRK1Q8WUW1 75 aa3.43□□□□□ -1.86
LIMA1-212ENST00000552491 LINC00476Q8WZB0 136 aa3.43□□□□□ -1.86
LIMA1-212ENST00000552491 COL6A5A8TX70 2615 aa3.42□□□□□ -1.86
LIMA1-212ENST00000552491 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.42□□□□□ -1.86
LIMA1-212ENST00000552491 HCG22E2RYF7 251 aa3.42□□□□□ -1.86
LIMA1-212ENST00000552491 REG3GQ6UW15 175 aa3.42□□□□□ -1.86
LIMA1-212ENST00000552491 KRTAP21-3Q3LHN1 58 aa3.42□□□□□ -1.86
LIMA1-212ENST00000552491 IGFL1Q6UW32 110 aa3.42□□□□□ -1.86
LIMA1-212ENST00000552491 C1orf64Q8NEQ6 169 aa3.42□□□□□ -1.86
LIMA1-212ENST00000552491 PKIGQ9Y2B9 76 aa3.42□□□□□ -1.86
LIMA1-212ENST00000552491 NBEAL1Q6ZS30 2694 aa3.41□□□□□ -1.86
LIMA1-212ENST00000552491 PSCAO43653 123 aa3.41□□□□□ -1.86
LIMA1-212ENST00000552491 PRLHP81277 87 aa3.41□□□□□ -1.86
LIMA1-212ENST00000552491 PRR4Q16378 134 aa3.41□□□□□ -1.86
LIMA1-212ENST00000552491 DNAH7Q8WXX0 4024 aa3.41□□□□□ -1.86
LIMA1-212ENST00000552491 Q1T7F1 81 aa3.4□□□□□ -1.86
LIMA1-212ENST00000552491 CYP4F30PQ9H0H9 118 aa3.4□□□□□ -1.86
LIMA1-212ENST00000552491 IGLV8-61A0A075B6I0 122 aa3.4□□□□□ -1.87
LIMA1-212ENST00000552491 NDUFB1O75438 58 aa3.4□□□□□ -1.87
LIMA1-212ENST00000552491 PRB2P02812 416 aaPredicted RBP3.4□□□□□ -1.87
LIMA1-212ENST00000552491 RPL37AP61513 92 aaKnown RBP3.4□□□□□ -1.87
LIMA1-212ENST00000552491 KRTAP11-1Q8IUC1 163 aa3.4□□□□□ -1.87
LIMA1-212ENST00000552491 A0A087WSZ3 146 aa3.39□□□□□ -1.87
LIMA1-212ENST00000552491 A0A096LNI7 61 aa3.39□□□□□ -1.87
LIMA1-212ENST00000552491 WFDC13Q8IUB5 93 aa3.39□□□□□ -1.87
LIMA1-212ENST00000552491 IGKV2-24A0A0C4DH68 120 aa3.39□□□□□ -1.87
LIMA1-212ENST00000552491 KRTAP1-5Q9BYS1 174 aa3.39□□□□□ -1.87
LIMA1-212ENST00000552491 MP68P56378 58 aa3.38□□□□□ -1.87
LIMA1-212ENST00000552491 KRTAP24-1Q3LI83 254 aa3.38□□□□□ -1.87
LIMA1-212ENST00000552491 COL7A1Q02388 2944 aa3.38□□□□□ -1.87
LIMA1-212ENST00000552491 KRTAP29-1A8MX34 341 aaPredicted RBP3.37□□□□□ -1.87
LIMA1-212ENST00000552491 STAB2Q8WWQ8 2551 aa3.37□□□□□ -1.87
LIMA1-212ENST00000552491 TRAV22A0A0B4J277 110 aa3.37□□□□□ -1.87
LIMA1-212ENST00000552491 C16orf90A8MZG2 172 aa3.37□□□□□ -1.87
LIMA1-212ENST00000552491 C1orf195Q5TG92 126 aa3.37□□□□□ -1.87
LIMA1-212ENST00000552491 TENM2Q9NT68 2774 aa3.37□□□□□ -1.87
LIMA1-212ENST00000552491 PSPHP1O15172 72 aa3.37□□□□□ -1.87
LIMA1-212ENST00000552491 CHTF8P0CG12 524 aa3.37□□□□□ -1.87
LIMA1-212ENST00000552491 H3BPC8 53 aa3.36□□□□□ -1.87
LIMA1-212ENST00000552491 UBE2AP49459 152 aa3.36□□□□□ -1.87
LIMA1-212ENST00000552491 CNBPP62633 177 aaKnown RBP3.36□□□□□ -1.87
LIMA1-212ENST00000552491 PRR15Q8IV56 129 aa3.36□□□□□ -1.87
LIMA1-212ENST00000552491 LINC00208Q96KT6 92 aa3.36□□□□□ -1.87
LIMA1-212ENST00000552491 PHF5AQ7RTV0 110 aaKnown RBP3.36□□□□□ -1.87
LIMA1-212ENST00000552491 FRAS1Q86XX4 4008 aa3.35□□□□□ -1.87
LIMA1-212ENST00000552491 SPRR1BP22528 89 aa3.35□□□□□ -1.87
LIMA1-212ENST00000552491 CASC2Q6XLA1 102 aa3.35□□□□□ -1.87
LIMA1-212ENST00000552491 SPANXA2-OT1Q8N9U9 137 aa3.35□□□□□ -1.87
LIMA1-212ENST00000552491 B9D2Q9BPU9 175 aa3.35□□□□□ -1.87
LIMA1-212ENST00000552491 V9GYY9 64 aa3.35□□□□□ -1.87
LIMA1-212ENST00000552491 A8MU10 97 aa3.35□□□□□ -1.87
LIMA1-212ENST00000552491 H0Y9J4 135 aa3.35□□□□□ -1.87
LIMA1-212ENST00000552491 PLECQ15149 4684 aaKnown RBP3.34□□□□□ -1.87
LIMA1-212ENST00000552491 DYNC2H1Q8NCM8 4307 aaKnown RBP3.34□□□□□ -1.87
LIMA1-212ENST00000552491 A8MWP4 228 aa3.34□□□□□ -1.87
LIMA1-212ENST00000552491 H0Y9P7 68 aa3.34□□□□□ -1.87
LIMA1-212ENST00000552491 LINC00472Q9H8W2 130 aa3.34□□□□□ -1.87
LIMA1-212ENST00000552491 MGAM2Q2M2H8 2515 aa3.34□□□□□ -1.88
LIMA1-212ENST00000552491 A8MUN3 132 aa3.33□□□□□ -1.88
LIMA1-212ENST00000552491 K7EIL1 84 aa3.33□□□□□ -1.88
LIMA1-212ENST00000552491 PANO1I0J062 215 aa3.32□□□□□ -1.88
LIMA1-212ENST00000552491 C9orf163Q8N9P6 203 aa3.32□□□□□ -1.88
LIMA1-212ENST00000552491 MMP24-AS1A0A0U1RRL7 71 aa3.31□□□□□ -1.88
LIMA1-212ENST00000552491 C14orf177Q52M58 125 aa3.31□□□□□ -1.88
LIMA1-212ENST00000552491 Q5VV11 94 aa3.31□□□□□ -1.88
LIMA1-212ENST00000552491 DNAH8Q96JB1 4490 aa3.31□□□□□ -1.88
LIMA1-212ENST00000552491 HECTD4Q9Y4D8 3996 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms