RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 S100PP25815 95 aa6.89□□□□□ -1.31
VPS29-209ENST00000551655 Q6ZVH6 145 aa6.89□□□□□ -1.31
VPS29-209ENST00000551655 SPANXDQ9BXN6 97 aa6.89□□□□□ -1.31
VPS29-209ENST00000551655 SPANXCQ9NY87 97 aa6.89□□□□□ -1.31
VPS29-209ENST00000551655 KRTAP5-9P26371 169 aa6.87□□□□□ -1.31
VPS29-209ENST00000551655 NMUP48645 174 aa6.87□□□□□ -1.31
VPS29-209ENST00000551655 COX19Q49B96 90 aa6.87□□□□□ -1.31
VPS29-209ENST00000551655 LINC00308Q8TCZ7 52 aa6.87□□□□□ -1.31
VPS29-209ENST00000551655 NOTCH2NLQ7Z3S9 236 aa6.86□□□□□ -1.31
VPS29-209ENST00000551655 LINC00518Q8N0U6 118 aa6.86□□□□□ -1.31
VPS29-209ENST00000551655 DSCR10P59022 87 aa6.85□□□□□ -1.31
VPS29-209ENST00000551655 TRAPPC1Q9Y5R8 145 aa6.85□□□□□ -1.31
VPS29-209ENST00000551655 F8WEM9 126 aa6.84□□□□□ -1.31
VPS29-209ENST00000551655 LST1O00453 97 aa6.84□□□□□ -1.31
VPS29-209ENST00000551655 LITAFQ99732 161 aa6.84□□□□□ -1.31
VPS29-209ENST00000551655 CLEC2BQ92478 149 aa6.83□□□□□ -1.32
VPS29-209ENST00000551655 PMCHL2Q9BQD1 86 aa6.83□□□□□ -1.32
VPS29-209ENST00000551655 A0A1B0GWB2 263 aa6.82□□□□□ -1.32
VPS29-209ENST00000551655 A6NN06 94 aa6.82□□□□□ -1.32
VPS29-209ENST00000551655 A8MWP4 228 aa6.82□□□□□ -1.32
VPS29-209ENST00000551655 TRBV7-6A0A0J9YX20 115 aa6.81□□□□□ -1.32
VPS29-209ENST00000551655 HERVK_113P61574 105 aa6.8□□□□□ -1.32
VPS29-209ENST00000551655 PLNP26678 52 aa6.78□□□□□ -1.32
VPS29-209ENST00000551655 Q6JHZ5 121 aa6.78□□□□□ -1.32
VPS29-209ENST00000551655 CHCHD1Q96BP2 118 aaKnown RBP6.77□□□□□ -1.33
VPS29-209ENST00000551655 SERF1AO75920 110 aa6.75□□□□□ -1.33
VPS29-209ENST00000551655 DPM2O94777 84 aa6.75□□□□□ -1.33
VPS29-209ENST00000551655 SLC7A5P1Q8MH63 180 aa6.74□□□□□ -1.33
VPS29-209ENST00000551655 TMEM218A2RU14 115 aa6.73□□□□□ -1.33
VPS29-209ENST00000551655 IGKCP01834 107 aa6.73□□□□□ -1.33
VPS29-209ENST00000551655 OCIAD2Q56VL3 154 aa6.73□□□□□ -1.33
VPS29-209ENST00000551655 MTURNQ8N3F0 131 aa6.72□□□□□ -1.33
VPS29-209ENST00000551655 TRAV13-2A0A0B4J235 113 aa6.71□□□□□ -1.34
VPS29-209ENST00000551655 A6NDN8 102 aa6.71□□□□□ -1.34
VPS29-209ENST00000551655 HSBP1O75506 76 aa6.71□□□□□ -1.34
VPS29-209ENST00000551655 E9PLD3 99 aa6.7□□□□□ -1.34
VPS29-209ENST00000551655 H3BUT2 72 aa6.7□□□□□ -1.34
VPS29-209ENST00000551655 TIMM17BO60830 172 aa6.7□□□□□ -1.34
VPS29-209ENST00000551655 NHP2Q9NX24 153 aaKnown RBP6.7□□□□□ -1.34
VPS29-209ENST00000551655 GPR98Q8WXG9 6306 aa6.7□□□□□ -1.34
VPS29-209ENST00000551655 Q6ZQY7 126 aa6.69□□□□□ -1.34
VPS29-209ENST00000551655 A4D1N5 150 aa6.68□□□□□ -1.34
VPS29-209ENST00000551655 LEPROTL1O95214 131 aa6.68□□□□□ -1.34
VPS29-209ENST00000551655 ANKRD39Q53RE8 183 aa6.68□□□□□ -1.34
VPS29-209ENST00000551655 TTTY13Q9BZ97 58 aa6.68□□□□□ -1.34
VPS29-209ENST00000551655 SMIM11BQ8TCY0 68 aa6.67□□□□□ -1.34
VPS29-209ENST00000551655 COLCA2A8K830 154 aa6.66□□□□□ -1.34
VPS29-209ENST00000551655 MT1BP07438 61 aa6.66□□□□□ -1.34
VPS29-209ENST00000551655 FABP4P15090 132 aa6.65□□□□□ -1.34
VPS29-209ENST00000551655 LINC00313P59037 77 aa6.65□□□□□ -1.34
VPS29-209ENST00000551655 SIGMAR1Q99720 223 aa6.65□□□□□ -1.34
VPS29-209ENST00000551655 KRTAP2-2Q9BYT5 123 aa6.65□□□□□ -1.34
VPS29-209ENST00000551655 KRTAP2-1Q9BYU5 128 aa6.65□□□□□ -1.34
VPS29-209ENST00000551655 SS18L2Q9UHA2 77 aa6.65□□□□□ -1.34
VPS29-209ENST00000551655 ZNF815PA8K554 130 aa6.63□□□□□ -1.35
VPS29-209ENST00000551655 LINC00575Q6W349 94 aa6.63□□□□□ -1.35
VPS29-209ENST00000551655 A0A087WSZ3 146 aa6.62□□□□□ -1.35
VPS29-209ENST00000551655 SPRR2EP22531 72 aa6.62□□□□□ -1.35
VPS29-209ENST00000551655 SPRR2BP35325 72 aa6.62□□□□□ -1.35
VPS29-209ENST00000551655 SPRR2AP35326 72 aa6.62□□□□□ -1.35
VPS29-209ENST00000551655 KRTAP10-5P60370 271 aa6.61□□□□□ -1.35
VPS29-209ENST00000551655 UQCC3Q6UW78 93 aa6.61□□□□□ -1.35
VPS29-209ENST00000551655 SPINK7P58062 85 aa6.6□□□□□ -1.35
VPS29-209ENST00000551655 HSPB8Q9UJY1 196 aa6.6□□□□□ -1.35
VPS29-209ENST00000551655 hADV29S1A0JD25 119 aa6.59□□□□□ -1.35
VPS29-209ENST00000551655 CLLU1Q5K131 121 aa6.58□□□□□ -1.36
VPS29-209ENST00000551655 A0A1W2PNM2 257 aa6.57□□□□□ -1.36
VPS29-209ENST00000551655 WFDC13Q8IUB5 93 aa6.57□□□□□ -1.36
VPS29-209ENST00000551655 SNHG12Q9BXW3 62 aa6.56□□□□□ -1.36
VPS29-209ENST00000551655 MUSTN1Q8IVN3 82 aa6.55□□□□□ -1.36
VPS29-209ENST00000551655 SPRR2FQ96RM1 72 aa6.55□□□□□ -1.36
VPS29-209ENST00000551655 TEN1Q86WV5 123 aa6.54□□□□□ -1.36
VPS29-209ENST00000551655 IGKV4-1P06312 121 aa6.53□□□□□ -1.36
VPS29-209ENST00000551655 VAMP3Q15836 100 aa6.53□□□□□ -1.36
VPS29-209ENST00000551655 Q5VV11 94 aa6.53□□□□□ -1.36
VPS29-209ENST00000551655 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.51□□□□□ -1.37
VPS29-209ENST00000551655 SCGB1D4Q6XE38 83 aa6.51□□□□□ -1.37
VPS29-209ENST00000551655 ZCCHC13Q8WW36 166 aaKnown RBP6.51□□□□□ -1.37
VPS29-209ENST00000551655 YPEL4Q96NS1 127 aa6.51□□□□□ -1.37
VPS29-209ENST00000551655 SCGB1D1O95968 90 aa6.5□□□□□ -1.37
VPS29-209ENST00000551655 DEFB116Q30KQ4 102 aa6.5□□□□□ -1.37
VPS29-209ENST00000551655 IGHV6-1A0A0B4J1U7 121 aa6.49□□□□□ -1.37
VPS29-209ENST00000551655 IFITM1P13164 125 aa6.49□□□□□ -1.37
VPS29-209ENST00000551655 FAM218AQ96MZ4 157 aa6.49□□□□□ -1.37
VPS29-209ENST00000551655 KRTAP19-8Q3LI54 63 aa6.47□□□□□ -1.37
VPS29-209ENST00000551655 PPDPFLQ8WWR9 84 aa6.47□□□□□ -1.37
VPS29-209ENST00000551655 COPS9Q8WXC6 57 aa6.46□□□□□ -1.38
VPS29-209ENST00000551655 SYS1-DBNDD2H3BUS1 97 aa6.45□□□□□ -1.38
VPS29-209ENST00000551655 TRGC2P03986 189 aa6.45□□□□□ -1.38
VPS29-209ENST00000551655 LCE1AQ5T7P2 110 aa6.43□□□□□ -1.38
VPS29-209ENST00000551655 APOC3P02656 99 aa6.42□□□□□ -1.38
VPS29-209ENST00000551655 H1FX-AS1Q4G0G2 97 aa6.42□□□□□ -1.38
VPS29-209ENST00000551655 SPRR2DP22532 72 aa6.41□□□□□ -1.38
VPS29-209ENST00000551655 NDUFV3P56181 108 aaKnown RBP6.41□□□□□ -1.38
VPS29-209ENST00000551655 LINC01545Q5VT33 79 aa6.41□□□□□ -1.38
VPS29-209ENST00000551655 FAM236AA0A1B0GUQ0 79 aa6.37□□□□□ -1.39
VPS29-209ENST00000551655 FAM236BA0A1B0GV22 79 aa6.37□□□□□ -1.39
VPS29-209ENST00000551655 SPRR2GQ9BYE4 73 aa6.37□□□□□ -1.39
VPS29-209ENST00000551655 LINC00472Q9H8W2 130 aa6.37□□□□□ -1.39
VPS29-209ENST00000551655 H3BMG7 143 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms