RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 KIAA0087Q14695 138 aa3.69□□□□□ -1.82
LIMA1-203ENST00000547825 LINC01600Q96MT4 127 aa3.69□□□□□ -1.82
LIMA1-203ENST00000547825 A0A1B0GUV1 79 aa3.69□□□□□ -1.82
LIMA1-203ENST00000547825 IGLV1-51P01701 117 aa3.69□□□□□ -1.82
LIMA1-203ENST00000547825 SPINK6Q6UWN8 80 aa3.69□□□□□ -1.82
LIMA1-203ENST00000547825 CXCL6P80162 114 aa3.68□□□□□ -1.82
LIMA1-203ENST00000547825 STAB1Q9NY15 2570 aa3.68□□□□□ -1.82
LIMA1-203ENST00000547825 C11orf45Q8TAV5 145 aa3.68□□□□□ -1.82
LIMA1-203ENST00000547825 RYR3Q15413 4870 aa3.68□□□□□ -1.82
LIMA1-203ENST00000547825 C6orf48Q9UBA6 75 aa3.67□□□□□ -1.82
LIMA1-203ENST00000547825 KMT2CQ8NEZ4 4911 aaKnown RBP3.67□□□□□ -1.82
LIMA1-203ENST00000547825 A0A0G2JQZ4 141 aa3.67□□□□□ -1.82
LIMA1-203ENST00000547825 A0A1W2PNN7 141 aa3.67□□□□□ -1.82
LIMA1-203ENST00000547825 HYDINQ4G0P3 5121 aa3.67□□□□□ -1.82
LIMA1-203ENST00000547825 HECTD4Q9Y4D8 3996 aa3.67□□□□□ -1.82
LIMA1-203ENST00000547825 EGFEM1PQ0D2K5 195 aa3.67□□□□□ -1.82
LIMA1-203ENST00000547825 Q6ZTC4 211 aa3.66□□□□□ -1.82
LIMA1-203ENST00000547825 VPS13DQ5THJ4 4388 aa3.66□□□□□ -1.82
LIMA1-203ENST00000547825 PRLHP81277 87 aa3.66□□□□□ -1.82
LIMA1-203ENST00000547825 A8MUN3 132 aa3.66□□□□□ -1.82
LIMA1-203ENST00000547825 OXTP01178 125 aa3.66□□□□□ -1.82
LIMA1-203ENST00000547825 ST20-AS1Q8NBB2 130 aa3.66□□□□□ -1.82
LIMA1-203ENST00000547825 DHRS4-AS1Q9P1J3 65 aa3.66□□□□□ -1.82
LIMA1-203ENST00000547825 PLECQ15149 4684 aaKnown RBP3.66□□□□□ -1.82
LIMA1-203ENST00000547825 RPL37AP61513 92 aaKnown RBP3.64□□□□□ -1.83
LIMA1-203ENST00000547825 FAT2Q9NYQ8 4349 aa3.64□□□□□ -1.83
LIMA1-203ENST00000547825 RYR2Q92736 4967 aa3.64□□□□□ -1.83
LIMA1-203ENST00000547825 H0Y9P7 68 aa3.64□□□□□ -1.83
LIMA1-203ENST00000547825 KLKP1Q107X0 134 aa3.64□□□□□ -1.83
LIMA1-203ENST00000547825 LYPD5Q6UWN5 251 aa3.64□□□□□ -1.83
LIMA1-203ENST00000547825 CASC2Q6XLA1 102 aa3.64□□□□□ -1.83
LIMA1-203ENST00000547825 C7orf33Q8WU49 177 aa3.64□□□□□ -1.83
LIMA1-203ENST00000547825 DNAH2Q9P225 4427 aa3.64□□□□□ -1.83
LIMA1-203ENST00000547825 TENM3Q9P273 2699 aa3.64□□□□□ -1.83
LIMA1-203ENST00000547825 HCG22E2RYF7 251 aa3.63□□□□□ -1.83
LIMA1-203ENST00000547825 LOC110117498A0A087WWA1 95 aa3.63□□□□□ -1.83
LIMA1-203ENST00000547825 Q5XG85 94 aa3.63□□□□□ -1.83
LIMA1-203ENST00000547825 B9D2Q9BPU9 175 aa3.63□□□□□ -1.83
LIMA1-203ENST00000547825 PKD1P98161 4303 aa3.63□□□□□ -1.83
LIMA1-203ENST00000547825 RETNLBQ9BQ08 111 aa3.63□□□□□ -1.83
LIMA1-203ENST00000547825 SRRM2Q9UQ35 2752 aaKnown RBP3.63□□□□□ -1.83
LIMA1-203ENST00000547825 SPAG11AQ6PDA7 123 aa3.63□□□□□ -1.83
LIMA1-203ENST00000547825 KMT2AQ03164 3969 aa3.62□□□□□ -1.83
LIMA1-203ENST00000547825 ELOF1P60002 83 aaKnown RBP3.62□□□□□ -1.83
LIMA1-203ENST00000547825 C1orf64Q8NEQ6 169 aa3.62□□□□□ -1.83
LIMA1-203ENST00000547825 PRAC1Q96KF2 57 aa3.62□□□□□ -1.83
LIMA1-203ENST00000547825 KRTAP9-9Q9BYP9 154 aa3.62□□□□□ -1.83
LIMA1-203ENST00000547825 KRTAP9-4Q9BYQ2 154 aa3.62□□□□□ -1.83
LIMA1-203ENST00000547825 DNAH17Q9UFH2 4485 aa3.62□□□□□ -1.83
LIMA1-203ENST00000547825 DMBT1Q9UGM3 2413 aaPredicted RBP3.62□□□□□ -1.83
LIMA1-203ENST00000547825 K7EQZ3 153 aa3.62□□□□□ -1.83
LIMA1-203ENST00000547825 GIG44P09565 113 aaPredicted RBP3.62□□□□□ -1.83
LIMA1-203ENST00000547825 IGHV6-1A0A0B4J1U7 121 aa3.62□□□□□ -1.83
LIMA1-203ENST00000547825 LOC100996750A0A140TA64 210 aa3.62□□□□□ -1.83
LIMA1-203ENST00000547825 KRTAP4-6Q9BYQ5 205 aa3.62□□□□□ -1.83
LIMA1-203ENST00000547825 TRBV7-4A0A0J9YYF1 115 aa3.61□□□□□ -1.83
LIMA1-203ENST00000547825 Q8NDZ9 215 aa3.61□□□□□ -1.83
LIMA1-203ENST00000547825 Q9BRP9 147 aa3.61□□□□□ -1.83
LIMA1-203ENST00000547825 IGLV6-57P01721 117 aa3.61□□□□□ -1.83
LIMA1-203ENST00000547825 LINC00167Q96N53 147 aa3.61□□□□□ -1.83
LIMA1-203ENST00000547825 FAM168BA1KXE4 195 aa3.61□□□□□ -1.83
LIMA1-203ENST00000547825 PLAC8L1A1L4L8 177 aa3.61□□□□□ -1.83
LIMA1-203ENST00000547825 Q6ZRP5 223 aa3.61□□□□□ -1.83
LIMA1-203ENST00000547825 BCE1O60756 84 aa3.6□□□□□ -1.83
LIMA1-203ENST00000547825 REG3GQ6UW15 175 aa3.6□□□□□ -1.83
LIMA1-203ENST00000547825 FP248Q71RG6 208 aaPredicted RBP3.6□□□□□ -1.83
LIMA1-203ENST00000547825 FAM229BQ4G0N7 80 aa3.6□□□□□ -1.83
LIMA1-203ENST00000547825 STAB2Q8WWQ8 2551 aa3.59□□□□□ -1.83
LIMA1-203ENST00000547825 OBSCN-AS1Q96MR7 158 aa3.59□□□□□ -1.83
LIMA1-203ENST00000547825 Q8NBF4 154 aa3.59□□□□□ -1.83
LIMA1-203ENST00000547825 TRAV22A0A0B4J277 110 aa3.59□□□□□ -1.84
LIMA1-203ENST00000547825 CSNK1G2-AS1Q8NCQ2 148 aa3.58□□□□□ -1.84
LIMA1-203ENST00000547825 KRTAP4-12Q9BQ66 201 aa3.58□□□□□ -1.84
LIMA1-203ENST00000547825 SPINK1P00995 79 aa3.57□□□□□ -1.84
LIMA1-203ENST00000547825 Q8N377 158 aa3.57□□□□□ -1.84
LIMA1-203ENST00000547825 hDV103S1A0JD37 113 aa3.57□□□□□ -1.84
LIMA1-203ENST00000547825 KRTAP10-11P60412 298 aa3.57□□□□□ -1.84
LIMA1-203ENST00000547825 DNAH11Q96DT5 4516 aa3.57□□□□□ -1.84
LIMA1-203ENST00000547825 Q6ZRX8 168 aa3.56□□□□□ -1.84
LIMA1-203ENST00000547825 LIMD2Q9BT23 127 aa3.56□□□□□ -1.84
LIMA1-203ENST00000547825 IGLV8-61A0A075B6I0 122 aa3.56□□□□□ -1.84
LIMA1-203ENST00000547825 A0A1W2PNM2 257 aa3.55□□□□□ -1.84
LIMA1-203ENST00000547825 ERC2-IT1O76042 136 aa3.55□□□□□ -1.84
LIMA1-203ENST00000547825 CHTF8P0CG12 524 aa3.55□□□□□ -1.84
LIMA1-203ENST00000547825 CIRBP-AS1Q8TBR5 109 aa3.55□□□□□ -1.84
LIMA1-203ENST00000547825 Q8NAQ8 132 aa3.54□□□□□ -1.84
LIMA1-203ENST00000547825 OCR1Q9BZK8 76 aa3.54□□□□□ -1.84
LIMA1-203ENST00000547825 EPM2AB3EWF7 344 aa3.53□□□□□ -1.84
LIMA1-203ENST00000547825 TGP01266 2768 aa3.53□□□□□ -1.84
LIMA1-203ENST00000547825 PHF5AQ7RTV0 110 aaKnown RBP3.53□□□□□ -1.84
LIMA1-203ENST00000547825 LINC01556Q5JQF7 62 aa3.52□□□□□ -1.85
LIMA1-203ENST00000547825 COA5Q86WW8 74 aa3.52□□□□□ -1.85
LIMA1-203ENST00000547825 KRTAP4-8Q9BYQ9 185 aa3.52□□□□□ -1.85
LIMA1-203ENST00000547825 GVQW2A0A096LPI5 108 aaPredicted RBP3.51□□□□□ -1.85
LIMA1-203ENST00000547825 K7EIL1 84 aa3.51□□□□□ -1.85
LIMA1-203ENST00000547825 IGFL1Q6UW32 110 aa3.51□□□□□ -1.85
LIMA1-203ENST00000547825 C15orf56Q8N910 161 aa3.51□□□□□ -1.85
LIMA1-203ENST00000547825 TENM2Q9NT68 2774 aa3.51□□□□□ -1.85
LIMA1-203ENST00000547825 CASC10Q5T4H9 136 aa3.51□□□□□ -1.85
LIMA1-203ENST00000547825 PRR34Q9NV39 138 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms