RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 IGFL1Q6UW32 110 aa8.36□□□□□ -1.07
MSH6-210ENST00000540021 SPINK6Q6UWN8 80 aa8.35□□□□□ -1.07
MSH6-210ENST00000540021 F8WDY8 70 aa8.35□□□□□ -1.07
MSH6-210ENST00000540021 DSCR10P59022 87 aa8.35□□□□□ -1.07
MSH6-210ENST00000540021 PKD1L1Q8TDX9 2849 aa8.34□□□□□ -1.07
MSH6-210ENST00000540021 PHF5AQ7RTV0 110 aaKnown RBP8.34□□□□□ -1.07
MSH6-210ENST00000540021 hDV103S1A0JD37 113 aa8.33□□□□□ -1.08
MSH6-210ENST00000540021 TRAV22A0A0B4J277 110 aa8.32□□□□□ -1.08
MSH6-210ENST00000540021 DNAH10OSP0CZ25 163 aa8.32□□□□□ -1.08
MSH6-210ENST00000540021 SEC61GP60059 68 aa8.31□□□□□ -1.08
MSH6-210ENST00000540021 IGHV6-1A0A0B4J1U7 121 aa8.31□□□□□ -1.08
MSH6-210ENST00000540021 A0A1B0GW54 56 aa8.3□□□□□ -1.08
MSH6-210ENST00000540021 TENM3Q9P273 2699 aa8.3□□□□□ -1.08
MSH6-210ENST00000540021 KRTAP26-1Q6PEX3 210 aa8.3□□□□□ -1.08
MSH6-210ENST00000540021 TENM4Q6N022 2769 aa8.29□□□□□ -1.08
MSH6-210ENST00000540021 C14orf177Q52M58 125 aa8.25□□□□□ -1.09
MSH6-210ENST00000540021 SPAG11AQ6PDA7 123 aa8.25□□□□□ -1.09
MSH6-210ENST00000540021 FBN1P35555 2871 aaKnown RBP8.24□□□□□ -1.09
MSH6-210ENST00000540021 TLX1NBP0CAT3 122 aa8.23□□□□□ -1.09
MSH6-210ENST00000540021 SPRR4Q96PI1 79 aa8.23□□□□□ -1.09
MSH6-210ENST00000540021 C16orf90A8MZG2 172 aa8.22□□□□□ -1.09
MSH6-210ENST00000540021 KRTAP24-1Q3LI83 254 aa8.22□□□□□ -1.09
MSH6-210ENST00000540021 PRR15Q8IV56 129 aa8.21□□□□□ -1.1
MSH6-210ENST00000540021 LIMD2Q9BT23 127 aa8.2□□□□□ -1.1
MSH6-210ENST00000540021 PLA2G2DQ9UNK4 145 aa8.2□□□□□ -1.1
MSH6-210ENST00000540021 RETNLBQ9BQ08 111 aa8.2□□□□□ -1.1
MSH6-210ENST00000540021 OTOGQ6ZRI0 2925 aa8.2□□□□□ -1.1
MSH6-210ENST00000540021 STAB2Q8WWQ8 2551 aa8.19□□□□□ -1.1
MSH6-210ENST00000540021 A8MWP4 228 aa8.19□□□□□ -1.1
MSH6-210ENST00000540021 COA5Q86WW8 74 aa8.18□□□□□ -1.1
MSH6-210ENST00000540021 SPRR1AP35321 89 aa8.17□□□□□ -1.1
MSH6-210ENST00000540021 Q1T7F1 81 aa8.16□□□□□ -1.1
MSH6-210ENST00000540021 TNP2Q05952 138 aa8.16□□□□□ -1.1
MSH6-210ENST00000540021 MOBPQ13875 183 aa8.15□□□□□ -1.1
MSH6-210ENST00000540021 ANK3Q12955 4377 aaKnown RBP8.14□□□□□ -1.11
MSH6-210ENST00000540021 IGLV5-37A0A075B6J1 123 aa8.14□□□□□ -1.11
MSH6-210ENST00000540021 CIRBP-AS1Q8TBR5 109 aa8.14□□□□□ -1.11
MSH6-210ENST00000540021 KRTAP4-16G5E9R7 235 aaPredicted RBP8.14□□□□□ -1.11
MSH6-210ENST00000540021 ANAPC11Q9NYG5 84 aa8.13□□□□□ -1.11
MSH6-210ENST00000540021 TRRAPQ9Y4A5 3859 aa8.13□□□□□ -1.11
MSH6-210ENST00000540021 KMT2BQ9UMN6 2715 aaPredicted RBP8.12□□□□□ -1.11
MSH6-210ENST00000540021 H3BPC8 53 aa8.11□□□□□ -1.11
MSH6-210ENST00000540021 CNBPP62633 177 aaKnown RBP8.11□□□□□ -1.11
MSH6-210ENST00000540021 KRTAP7-1Q8IUC3 87 aa8.11□□□□□ -1.11
MSH6-210ENST00000540021 CYP4F30PQ9H0H9 118 aa8.11□□□□□ -1.11
MSH6-210ENST00000540021 A8MU10 97 aa8.08□□□□□ -1.12
MSH6-210ENST00000540021 ZCCHC13Q8WW36 166 aaKnown RBP8.07□□□□□ -1.12
MSH6-210ENST00000540021 K7EIL1 84 aa8.07□□□□□ -1.12
MSH6-210ENST00000540021 Q8N9P0 234 aaPredicted RBP8.06□□□□□ -1.12
MSH6-210ENST00000540021 ZNF706Q9Y5V0 76 aaPredicted RBP8.06□□□□□ -1.12
MSH6-210ENST00000540021 KRTAP1-5Q9BYS1 174 aa8.06□□□□□ -1.12
MSH6-210ENST00000540021 Q5VV11 94 aa8.05□□□□□ -1.12
MSH6-210ENST00000540021 TP53AIP1Q9HCN2 124 aa8.05□□□□□ -1.12
MSH6-210ENST00000540021 C8orf17Q9NRJ1 99 aa8.05□□□□□ -1.12
MSH6-210ENST00000540021 MDFIQ99750 246 aa8.04□□□□□ -1.12
MSH6-210ENST00000540021 SRRM2Q9UQ35 2752 aaKnown RBP8.04□□□□□ -1.12
MSH6-210ENST00000540021 SPANXA2-OT1Q8N9U9 137 aa8.03□□□□□ -1.12
MSH6-210ENST00000540021 LOC101927531A0A1B0GV80 90 aa8.03□□□□□ -1.12
MSH6-210ENST00000540021 C9orf163Q8N9P6 203 aa8□□□□□ -1.13
MSH6-210ENST00000540021 MRPL34Q9BQ48 92 aaKnown RBP8□□□□□ -1.13
MSH6-210ENST00000540021 MMP24-AS1A0A0U1RRL7 71 aa8□□□□□ -1.13
MSH6-210ENST00000540021 KRTAP11-1Q8IUC1 163 aa8□□□□□ -1.13
MSH6-210ENST00000540021 LINC00472Q9H8W2 130 aa8□□□□□ -1.13
MSH6-210ENST00000540021 TENM2Q9NT68 2774 aa7.99□□□□□ -1.13
MSH6-210ENST00000540021 NBDYA0A0U1RRE5 68 aa7.99□□□□□ -1.13
MSH6-210ENST00000540021 PRR26Q8N8Z3 221 aa7.99□□□□□ -1.13
MSH6-210ENST00000540021 LCE6AA0A183 80 aa7.98□□□□□ -1.13
MSH6-210ENST00000540021 A0A1B0GVX0 72 aa7.97□□□□□ -1.13
MSH6-210ENST00000540021 KRTAP29-1A8MX34 341 aaPredicted RBP7.97□□□□□ -1.13
MSH6-210ENST00000540021 SPINK1P00995 79 aa7.97□□□□□ -1.13
MSH6-210ENST00000540021 CD164Q04900 197 aa7.97□□□□□ -1.13
MSH6-210ENST00000540021 ATP11AUNQ6ZP68 121 aa7.96□□□□□ -1.14
MSH6-210ENST00000540021 IGLV7-46A0A075B6I9 117 aa7.95□□□□□ -1.14
MSH6-210ENST00000540021 IGLV5-52A0A0A0MRZ9 124 aa7.95□□□□□ -1.14
MSH6-210ENST00000540021 IGLV8-61A0A075B6I0 122 aa7.95□□□□□ -1.14
MSH6-210ENST00000540021 KTN1-AS1Q86SY8 53 aa7.95□□□□□ -1.14
MSH6-210ENST00000540021 IGKV2D-30A0A075B6S6 120 aa7.94□□□□□ -1.14
MSH6-210ENST00000540021 IGKV2-30P06310 120 aa7.94□□□□□ -1.14
MSH6-210ENST00000540021 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.94□□□□□ -1.14
MSH6-210ENST00000540021 PANO1I0J062 215 aa7.93□□□□□ -1.14
MSH6-210ENST00000540021 RTL8CO15255 209 aa7.92□□□□□ -1.14
MSH6-210ENST00000540021 C4orf48Q5BLP8 95 aa7.92□□□□□ -1.14
MSH6-210ENST00000540021 PSORS1C2Q9UIG4 136 aa7.92□□□□□ -1.14
MSH6-210ENST00000540021 LY6G6CO95867 125 aa7.92□□□□□ -1.14
MSH6-210ENST00000540021 A0A1B0GU69 56 aa7.91□□□□□ -1.14
MSH6-210ENST00000540021 ACYP2P14621 99 aa7.91□□□□□ -1.14
MSH6-210ENST00000540021 NUPR2A6NF83 97 aa7.91□□□□□ -1.14
MSH6-210ENST00000540021 APLNQ9ULZ1 77 aa7.89□□□□□ -1.15
MSH6-210ENST00000540021 Q75L30 129 aa7.89□□□□□ -1.15
MSH6-210ENST00000540021 CDC42SE1Q9NRR8 79 aa7.89□□□□□ -1.15
MSH6-210ENST00000540021 SPINK7P58062 85 aa7.88□□□□□ -1.15
MSH6-210ENST00000540021 LCA10Q71F78 164 aa7.88□□□□□ -1.15
MSH6-210ENST00000540021 HRES1P13985 223 aa7.87□□□□□ -1.15
MSH6-210ENST00000540021 SPRR1BP22528 89 aa7.86□□□□□ -1.15
MSH6-210ENST00000540021 SPACA4Q8TDM5 124 aa7.86□□□□□ -1.15
MSH6-210ENST00000540021 RBM12B-AS1Q9P1G2 102 aa7.86□□□□□ -1.15
MSH6-210ENST00000540021 ZNF861PO60384 105 aa7.85□□□□□ -1.15
MSH6-210ENST00000540021 LINC00313P59037 77 aa7.84□□□□□ -1.15
MSH6-210ENST00000540021 A0A087X002 238 aa7.84□□□□□ -1.15
MSH6-210ENST00000540021 NOTCH2NLQ7Z3S9 236 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms