RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 KRTAP9-7A8MTY7 169 aa7.02□□□□□ -1.29
SS18-204ENST00000539244 F8WEM9 126 aa7.02□□□□□ -1.29
SS18-204ENST00000539244 Q6JHZ5 121 aa7.02□□□□□ -1.29
SS18-204ENST00000539244 MUSTN1Q8IVN3 82 aa7.02□□□□□ -1.29
SS18-204ENST00000539244 CFC1P0CG37 223 aa7.01□□□□□ -1.29
SS18-204ENST00000539244 Q6Q795 121 aa7.01□□□□□ -1.29
SS18-204ENST00000539244 PCP2Q8IVA1 136 aa7.01□□□□□ -1.29
SS18-204ENST00000539244 CLEC2BQ92478 149 aa7.01□□□□□ -1.29
SS18-204ENST00000539244 ANKRD39Q53RE8 183 aa7□□□□□ -1.29
SS18-204ENST00000539244 OBSCN-AS1Q96MR7 158 aa7□□□□□ -1.29
SS18-204ENST00000539244 KRTAP9-8Q9BYQ0 159 aa7□□□□□ -1.29
SS18-204ENST00000539244 IGFL1Q6UW32 110 aa6.99□□□□□ -1.29
SS18-204ENST00000539244 LINC00575Q6W349 94 aa6.99□□□□□ -1.29
SS18-204ENST00000539244 VAMP3Q15836 100 aa6.97□□□□□ -1.29
SS18-204ENST00000539244 Q6ZQY7 126 aa6.97□□□□□ -1.29
SS18-204ENST00000539244 KRTDAPP60985 99 aa6.96□□□□□ -1.3
SS18-204ENST00000539244 OCIAD2Q56VL3 154 aa6.96□□□□□ -1.3
SS18-204ENST00000539244 COA6Q5JTJ3 125 aaKnown RBP6.96□□□□□ -1.3
SS18-204ENST00000539244 hADV29S1A0JD25 119 aa6.95□□□□□ -1.3
SS18-204ENST00000539244 C20orf202A1L168 122 aa6.95□□□□□ -1.3
SS18-204ENST00000539244 SLC7A5P1Q8MH63 180 aa6.94□□□□□ -1.3
SS18-204ENST00000539244 USH2AO75445 5202 aa6.94□□□□□ -1.3
SS18-204ENST00000539244 C20orf166-AS1Q96NR2 134 aa6.93□□□□□ -1.3
SS18-204ENST00000539244 SSPOA2VEC9 5147 aa6.92□□□□□ -1.3
SS18-204ENST00000539244 LST1O00453 97 aa6.92□□□□□ -1.3
SS18-204ENST00000539244 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.92□□□□□ -1.3
SS18-204ENST00000539244 ATOH7Q8N100 152 aa6.92□□□□□ -1.3
SS18-204ENST00000539244 PPDPFLQ8WWR9 84 aa6.92□□□□□ -1.3
SS18-204ENST00000539244 Q96NJ1 140 aa6.92□□□□□ -1.3
SS18-204ENST00000539244 A8MUU9 505 aa6.91□□□□□ -1.3
SS18-204ENST00000539244 SCGB1D1O95968 90 aa6.89□□□□□ -1.31
SS18-204ENST00000539244 SNRPEP62304 92 aaKnown RBP6.89□□□□□ -1.31
SS18-204ENST00000539244 TRBV20-1A0A075B6N2 111 aa6.88□□□□□ -1.31
SS18-204ENST00000539244 SS18L2Q9UHA2 77 aa6.88□□□□□ -1.31
SS18-204ENST00000539244 H3BUT2 72 aa6.86□□□□□ -1.31
SS18-204ENST00000539244 SNHG12Q9BXW3 62 aa6.86□□□□□ -1.31
SS18-204ENST00000539244 MT2AP02795 61 aa6.85□□□□□ -1.31
SS18-204ENST00000539244 BVES-AS1Q5T3Y7 98 aa6.85□□□□□ -1.31
SS18-204ENST00000539244 FCGBPQ9Y6R7 5405 aaPredicted RBP6.84□□□□□ -1.31
SS18-204ENST00000539244 TEN1Q86WV5 123 aa6.83□□□□□ -1.32
SS18-204ENST00000539244 MT1FP04733 61 aa6.8□□□□□ -1.32
SS18-204ENST00000539244 KRTAP19-1Q8IUB9 90 aa6.8□□□□□ -1.32
SS18-204ENST00000539244 KRTAP16-1A8MUX0 517 aa6.79□□□□□ -1.32
SS18-204ENST00000539244 KRTAP9-3Q9BYQ3 159 aa6.79□□□□□ -1.32
SS18-204ENST00000539244 A0A087WSZ3 146 aa6.78□□□□□ -1.32
SS18-204ENST00000539244 MPLKIPQ8TAP9 179 aa6.78□□□□□ -1.32
SS18-204ENST00000539244 NDUFV3P56181 108 aaKnown RBP6.77□□□□□ -1.33
SS18-204ENST00000539244 DSCR10P59022 87 aa6.77□□□□□ -1.33
SS18-204ENST00000539244 C12orf57Q99622 126 aa6.77□□□□□ -1.33
SS18-204ENST00000539244 HSBP1L1C9JCN9 74 aa6.76□□□□□ -1.33
SS18-204ENST00000539244 FAM236DA0A1B0GTK5 79 aa6.75□□□□□ -1.33
SS18-204ENST00000539244 FAM236CP0DP71 79 aa6.75□□□□□ -1.33
SS18-204ENST00000539244 HRES1P13985 223 aa6.74□□□□□ -1.33
SS18-204ENST00000539244 HIST1H4GQ99525 98 aa6.74□□□□□ -1.33
SS18-204ENST00000539244 SNCGO76070 127 aa6.73□□□□□ -1.33
SS18-204ENST00000539244 KRTAP10-10P60014 251 aa6.73□□□□□ -1.33
SS18-204ENST00000539244 RBM12B-AS1Q9P1G2 102 aa6.73□□□□□ -1.33
SS18-204ENST00000539244 H0YGX0 51 aa6.72□□□□□ -1.33
SS18-204ENST00000539244 LINC00313P59037 77 aa6.72□□□□□ -1.33
SS18-204ENST00000539244 FAM218AQ96MZ4 157 aa6.72□□□□□ -1.33
SS18-204ENST00000539244 HIST1H2BLQ99880 126 aa6.72□□□□□ -1.33
SS18-204ENST00000539244 H3BMG7 143 aa6.71□□□□□ -1.34
SS18-204ENST00000539244 HIST3H2BBQ8N257 126 aa6.71□□□□□ -1.34
SS18-204ENST00000539244 SIGMAR1Q99720 223 aa6.71□□□□□ -1.34
SS18-204ENST00000539244 LOC100996750A0A140TA64 210 aa6.7□□□□□ -1.34
SS18-204ENST00000539244 A0A1W2PNM2 257 aa6.7□□□□□ -1.34
SS18-204ENST00000539244 KRTAP4-6Q9BYQ5 205 aa6.7□□□□□ -1.34
SS18-204ENST00000539244 GHRHP01286 108 aa6.69□□□□□ -1.34
SS18-204ENST00000539244 NOTCH2NLQ7Z3S9 236 aa6.69□□□□□ -1.34
SS18-204ENST00000539244 A0A1B0GX51 115 aa6.68□□□□□ -1.34
SS18-204ENST00000539244 COX8AP10176 69 aa6.68□□□□□ -1.34
SS18-204ENST00000539244 A0A0B4J2C4 111 aa6.67□□□□□ -1.34
SS18-204ENST00000539244 DLEU1O43261 78 aa6.67□□□□□ -1.34
SS18-204ENST00000539244 IGKV4-1P06312 121 aa6.67□□□□□ -1.34
SS18-204ENST00000539244 S100A2P29034 98 aa6.67□□□□□ -1.34
SS18-204ENST00000539244 RAB37Q96AX2 223 aa6.67□□□□□ -1.34
SS18-204ENST00000539244 MACF1Q9UPN3 7388 aaKnown RBP6.67□□□□□ -1.34
SS18-204ENST00000539244 TRBV7-4A0A0J9YYF1 115 aa6.65□□□□□ -1.34
SS18-204ENST00000539244 FABP2P12104 132 aa6.65□□□□□ -1.34
SS18-204ENST00000539244 KRTAP19-6Q3LI70 58 aa6.64□□□□□ -1.35
SS18-204ENST00000539244 LINC00472Q9H8W2 130 aa6.63□□□□□ -1.35
SS18-204ENST00000539244 LINC00846Q9NV44 126 aa6.63□□□□□ -1.35
SS18-204ENST00000539244 HIGD1BQ9P298 99 aa6.62□□□□□ -1.35
SS18-204ENST00000539244 SYNE2Q8WXH0 6885 aaKnown RBP6.61□□□□□ -1.35
SS18-204ENST00000539244 MTURNQ8N3F0 131 aa6.61□□□□□ -1.35
SS18-204ENST00000539244 ANKRD29Q8N6D5 301 aa6.61□□□□□ -1.35
SS18-204ENST00000539244 IGHV6-1A0A0B4J1U7 121 aa6.58□□□□□ -1.36
SS18-204ENST00000539244 DEFB116Q30KQ4 102 aa6.58□□□□□ -1.36
SS18-204ENST00000539244 PRO1854Q9UHT4 67 aa6.58□□□□□ -1.36
SS18-204ENST00000539244 H3BQ85 93 aa6.57□□□□□ -1.36
SS18-204ENST00000539244 C2orf91Q6ZV80 131 aa6.57□□□□□ -1.36
SS18-204ENST00000539244 C14orf144Q96I85 54 aa6.57□□□□□ -1.36
SS18-204ENST00000539244 C8orf87E5RJ46 101 aa6.56□□□□□ -1.36
SS18-204ENST00000539244 TRIAP1O43715 76 aa6.56□□□□□ -1.36
SS18-204ENST00000539244 ORMDL1Q9P0S3 153 aa6.56□□□□□ -1.36
SS18-204ENST00000539244 TRACP01848 142 aa6.55□□□□□ -1.36
SS18-204ENST00000539244 S100A6P06703 90 aa6.55□□□□□ -1.36
SS18-204ENST00000539244 CEND1Q8N111 149 aa6.55□□□□□ -1.36
SS18-204ENST00000539244 TMEM238LA0A1B0GVL6 79 aa6.54□□□□□ -1.36
SS18-204ENST00000539244 A0A1B0GVX0 72 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms