RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	TRAPPC2	P0DI81	140 aa		-0.03	□□□□□ -2.41
CD44-238	ENST00000534296	TRAPPC2B	P0DI82	140 aa		-0.03	□□□□□ -2.41
CD44-238	ENST00000534296	COX6B1	P14854	86 aa		-0.03	□□□□□ -2.41
CD44-238	ENST00000534296	ALS2	Q96Q42	1657 aa		-0.03	□□□□□ -2.41
CD44-238	ENST00000534296	DDX60	Q8IY21	1712 aa	Known RBP	-0.04	□□□□□ -2.42
CD44-238	ENST00000534296	LMO7	Q8WWI1	1683 aa		-0.04	□□□□□ -2.42
CD44-238	ENST00000534296		M0R2T5	61 aa		-0.04	□□□□□ -2.42
CD44-238	ENST00000534296	SPINK4	O60575	86 aa		-0.04	□□□□□ -2.42
CD44-238	ENST00000534296	DEFB124	Q8NES8	71 aa		-0.04	□□□□□ -2.42
CD44-238	ENST00000534296	TMEM263	Q8WUH6	116 aa	Known RBP	-0.04	□□□□□ -2.42
CD44-238	ENST00000534296	FXYD6	Q9H0Q3	95 aa		-0.04	□□□□□ -2.42
CD44-238	ENST00000534296	MANBAL	Q9NQG1	85 aa		-0.04	□□□□□ -2.42
CD44-238	ENST00000534296	IER3IP1	Q9Y5U9	82 aa		-0.04	□□□□□ -2.42
CD44-238	ENST00000534296	ARL2-SNX15	V9GYD0	113 aa		-0.04	□□□□□ -2.42
CD44-238	ENST00000534296	ATP7A	Q04656	1500 aa		-0.04	□□□□□ -2.42
CD44-238	ENST00000534296	NLRP1	Q9C000	1473 aa		-0.04	□□□□□ -2.42
CD44-238	ENST00000534296	DDX60L	Q5H9U9	1706 aa	Known RBP	-0.04	□□□□□ -2.42
CD44-238	ENST00000534296	MON2	Q7Z3U7	1717 aa		-0.04	□□□□□ -2.42
CD44-238	ENST00000534296	KIAA1551	Q9HCM1	1747 aa		-0.04	□□□□□ -2.42
CD44-238	ENST00000534296	SYS1-DBNDD2	H3BUS1	97 aa		-0.05	□□□□□ -2.42
CD44-238	ENST00000534296		I3L2K1	104 aa		-0.05	□□□□□ -2.42
CD44-238	ENST00000534296	CORT	O00230	105 aa		-0.05	□□□□□ -2.42
CD44-238	ENST00000534296	COX6C	P09669	75 aa		-0.05	□□□□□ -2.42
CD44-238	ENST00000534296	DEFB104A	Q8WTQ1	72 aa		-0.05	□□□□□ -2.42
CD44-238	ENST00000534296	PRO1933	Q9H354	126 aa		-0.05	□□□□□ -2.42
CD44-238	ENST00000534296	DPH3P1	Q9H4G8	78 aa		-0.05	□□□□□ -2.42
CD44-238	ENST00000534296	CDC42SE2	Q9NRR3	84 aa		-0.05	□□□□□ -2.42
CD44-238	ENST00000534296	ABCC6	O95255	1503 aa		-0.05	□□□□□ -2.42
CD44-238	ENST00000534296	LMTK2	Q8IWU2	1503 aa		-0.05	□□□□□ -2.42
CD44-238	ENST00000534296	NSD3	Q9BZ95	1437 aa		-0.05	□□□□□ -2.42
CD44-238	ENST00000534296	ABCC1	P33527	1531 aa		-0.06	□□□□□ -2.42
CD44-238	ENST00000534296	AGL	P35573	1532 aa		-0.06	□□□□□ -2.42
CD44-238	ENST00000534296		A0A1B0GWA3	101 aa		-0.06	□□□□□ -2.42
CD44-238	ENST00000534296	NAP1L6	A6NFF2	107 aa		-0.06	□□□□□ -2.42
CD44-238	ENST00000534296		K7EQZ3	153 aa		-0.06	□□□□□ -2.42
CD44-238	ENST00000534296	IGLC1	P0CG04	106 aa		-0.06	□□□□□ -2.42
CD44-238	ENST00000534296	GNG4	P50150	75 aa		-0.06	□□□□□ -2.42
CD44-238	ENST00000534296	MRPS10	P82664	201 aa	Known RBP	-0.06	□□□□□ -2.42
CD44-238	ENST00000534296	C12orf57	Q99622	126 aa		-0.06	□□□□□ -2.42
CD44-238	ENST00000534296	ARHGAP35	Q9NRY4	1499 aa		-0.06	□□□□□ -2.42
CD44-238	ENST00000534296	ARHGAP5	Q13017	1502 aa		-0.07	□□□□□ -2.42
CD44-238	ENST00000534296	PDCD11	Q14690	1871 aa	Known RBP	-0.07	□□□□□ -2.42
CD44-238	ENST00000534296	TRBV7-4	A0A0J9YYF1	115 aa		-0.07	□□□□□ -2.42
CD44-238	ENST00000534296	LYNX1	G3V0Z9	82 aa		-0.07	□□□□□ -2.42
CD44-238	ENST00000534296	S100A1	P23297	94 aa		-0.07	□□□□□ -2.42
CD44-238	ENST00000534296	PPP3R1	P63098	170 aa		-0.07	□□□□□ -2.42
CD44-238	ENST00000534296	KRTAP6-1	Q3LI64	71 aa		-0.07	□□□□□ -2.42
CD44-238	ENST00000534296	KRTAP8-1	Q8IUC2	63 aa		-0.07	□□□□□ -2.42
CD44-238	ENST00000534296	SPRR4	Q96PI1	79 aa		-0.07	□□□□□ -2.42
CD44-238	ENST00000534296	GNG8	Q9UK08	70 aa		-0.07	□□□□□ -2.42
CD44-238	ENST00000534296	CCDC180	Q9P1Z9	1646 aa		-0.07	□□□□□ -2.42
CD44-238	ENST00000534296	PLXNC1	O60486	1568 aa		-0.07	□□□□□ -2.42
CD44-238	ENST00000534296	INO80	Q9ULG1	1556 aa	Predicted RBP	-0.07	□□□□□ -2.42
CD44-238	ENST00000534296	MYO5C	Q9NQX4	1742 aa		-0.07	□□□□□ -2.42
CD44-238	ENST00000534296	COX8A	P10176	69 aa		-0.08	□□□□□ -2.42
CD44-238	ENST00000534296	KRTDAP	P60985	99 aa		-0.08	□□□□□ -2.42
CD44-238	ENST00000534296	GTF2H5	Q6ZYL4	71 aa		-0.08	□□□□□ -2.42
CD44-238	ENST00000534296	FAM223A	Q8IWN6	122 aa		-0.08	□□□□□ -2.42
CD44-238	ENST00000534296	TMEM203	Q969S6	136 aa		-0.08	□□□□□ -2.42
CD44-238	ENST00000534296	SCAPER	Q9BY12	1400 aa		-0.08	□□□□□ -2.42
CD44-238	ENST00000534296	CNTLN	Q9NXG0	1405 aa		-0.08	□□□□□ -2.42
CD44-238	ENST00000534296	C4A	P0C0L4	1744 aa		-0.08	□□□□□ -2.42
CD44-238	ENST00000534296	TRPM2	O94759	1503 aa		-0.08	□□□□□ -2.42
CD44-238	ENST00000534296	URB2	Q14146	1524 aa	Known RBP	-0.08	□□□□□ -2.42
CD44-238	ENST00000534296	ERICH3	Q5RHP9	1530 aa		-0.08	□□□□□ -2.42
CD44-238	ENST00000534296	ANKRD36	A6QL64	1941 aa		-0.09	□□□□□ -2.42
CD44-238	ENST00000534296	CDC42BPA	Q5VT25	1732 aa		-0.09	□□□□□ -2.42
CD44-238	ENST00000534296	MT1HL1	P0DM35	61 aa		-0.09	□□□□□ -2.42
CD44-238	ENST00000534296	USMG5	Q96IX5	58 aa		-0.09	□□□□□ -2.42
CD44-238	ENST00000534296	FAM167A-AS1	Q96KT0	104 aa		-0.09	□□□□□ -2.42
CD44-238	ENST00000534296	VAMP8	Q9BV40	100 aa		-0.09	□□□□□ -2.42
CD44-238	ENST00000534296	PRO1854	Q9UHT4	67 aa		-0.09	□□□□□ -2.42
CD44-238	ENST00000534296	ANKRD50	Q9ULJ7	1429 aa		-0.1	□□□□□ -2.43
CD44-238	ENST00000534296	CRYM-AS1	A6NIL9	109 aa		-0.1	□□□□□ -2.43
CD44-238	ENST00000534296	SPRR1B	P22528	89 aa		-0.1	□□□□□ -2.43
CD44-238	ENST00000534296	UBE2D3	P61077	147 aa		-0.1	□□□□□ -2.43
CD44-238	ENST00000534296	UBE2D2	P62837	147 aa		-0.1	□□□□□ -2.43
CD44-238	ENST00000534296		Q0VG73	95 aa		-0.1	□□□□□ -2.43
CD44-238	ENST00000534296	C10orf113	Q5VZT2	155 aa		-0.1	□□□□□ -2.43
CD44-238	ENST00000534296	CFAP74	Q9C0B2	1584 aa		-0.11	□□□□□ -2.43
CD44-238	ENST00000534296	MROH2A	A6NES4	1674 aa		-0.11	□□□□□ -2.43
CD44-238	ENST00000534296	TRO	Q12816	1431 aa	Predicted RBP	-0.11	□□□□□ -2.43
CD44-238	ENST00000534296	DEFB121	Q5J5C9	76 aa		-0.11	□□□□□ -2.43
CD44-238	ENST00000534296	SFTA2	Q6UW10	78 aa		-0.11	□□□□□ -2.43
CD44-238	ENST00000534296	C4B	P0C0L5	1744 aa		-0.11	□□□□□ -2.43
CD44-238	ENST00000534296	UACA	Q9BZF9	1416 aa		-0.12	□□□□□ -2.43
CD44-238	ENST00000534296	PIK3C2B	O00750	1634 aa		-0.12	□□□□□ -2.43
CD44-238	ENST00000534296		H3BQ15	152 aa		-0.12	□□□□□ -2.43
CD44-238	ENST00000534296	SAA2	P0DJI9	122 aa	Predicted RBP	-0.12	□□□□□ -2.43
CD44-238	ENST00000534296	SNCA	P37840	140 aa		-0.12	□□□□□ -2.43
CD44-238	ENST00000534296	LINC01600	Q96MT4	127 aa		-0.12	□□□□□ -2.43
CD44-238	ENST00000534296	DUOX1	Q9NRD9	1551 aa		-0.12	□□□□□ -2.43
CD44-238	ENST00000534296	FAM208A	Q9UK61	1670 aa	Known RBP	-0.12	□□□□□ -2.43
CD44-238	ENST00000534296	ABCC8	Q09428	1581 aa		-0.13	□□□□□ -2.43
CD44-238	ENST00000534296	SEC11A	P67812	179 aa		-0.13	□□□□□ -2.43
CD44-238	ENST00000534296	FANCD2	Q9BXW9	1451 aa		-0.14	□□□□□ -2.43
CD44-238	ENST00000534296	MT1B	P07438	61 aa		-0.14	□□□□□ -2.43
CD44-238	ENST00000534296	SMIM5	Q71RC9	77 aa		-0.14	□□□□□ -2.43
CD44-238	ENST00000534296	DEFB105A	Q8NG35	78 aa		-0.14	□□□□□ -2.43
CD44-238	ENST00000534296	CGREF1	Q99674	301 aa		-0.14	□□□□□ -2.43

Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms