RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 M0R2T5 61 aa7.89□□□□□ -1.15
VPS28-215ENST00000531924 hADV29S1A0JD25 119 aa7.88□□□□□ -1.15
VPS28-215ENST00000531924 Q6JHZ5 121 aa7.88□□□□□ -1.15
VPS28-215ENST00000531924 LINC00575Q6W349 94 aa7.88□□□□□ -1.15
VPS28-215ENST00000531924 S100A2P29034 98 aa7.87□□□□□ -1.15
VPS28-215ENST00000531924 Q6ZQY7 126 aa7.87□□□□□ -1.15
VPS28-215ENST00000531924 CRCT1Q9UGL9 99 aa7.86□□□□□ -1.15
VPS28-215ENST00000531924 CLEC2BQ92478 149 aa7.85□□□□□ -1.15
VPS28-215ENST00000531924 TRBV7-7A0A0K0K1E9 115 aa7.83□□□□□ -1.16
VPS28-215ENST00000531924 OCIAD2Q56VL3 154 aa7.83□□□□□ -1.16
VPS28-215ENST00000531924 IGFL1Q6UW32 110 aa7.82□□□□□ -1.16
VPS28-215ENST00000531924 SNHG12Q9BXW3 62 aa7.82□□□□□ -1.16
VPS28-215ENST00000531924 BVES-AS1Q5T3Y7 98 aa7.81□□□□□ -1.16
VPS28-215ENST00000531924 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.81□□□□□ -1.16
VPS28-215ENST00000531924 HIST1H2BLQ99880 126 aa7.81□□□□□ -1.16
VPS28-215ENST00000531924 ATP11AUNQ6ZP68 121 aa7.8□□□□□ -1.16
VPS28-215ENST00000531924 HIST3H2BBQ8N257 126 aa7.8□□□□□ -1.16
VPS28-215ENST00000531924 HIST1H4GQ99525 98 aa7.8□□□□□ -1.16
VPS28-215ENST00000531924 C12orf57Q99622 126 aa7.8□□□□□ -1.16
VPS28-215ENST00000531924 SNCGO76070 127 aa7.79□□□□□ -1.16
VPS28-215ENST00000531924 KRTAP10-6P60371 365 aaPredicted RBP7.79□□□□□ -1.16
VPS28-215ENST00000531924 PPDPFLQ8WWR9 84 aa7.79□□□□□ -1.16
VPS28-215ENST00000531924 OBSCN-AS1Q96MR7 158 aa7.79□□□□□ -1.16
VPS28-215ENST00000531924 SCGB1D1O95968 90 aa7.78□□□□□ -1.16
VPS28-215ENST00000531924 S100A6P06703 90 aa7.78□□□□□ -1.16
VPS28-215ENST00000531924 LST1O00453 97 aa7.77□□□□□ -1.17
VPS28-215ENST00000531924 LORP23490 312 aaPredicted RBP7.77□□□□□ -1.17
VPS28-215ENST00000531924 Q6Q795 121 aa7.77□□□□□ -1.17
VPS28-215ENST00000531924 H3BUT2 72 aa7.75□□□□□ -1.17
VPS28-215ENST00000531924 Q75L30 129 aa7.74□□□□□ -1.17
VPS28-215ENST00000531924 RAB37Q96AX2 223 aa7.73□□□□□ -1.17
VPS28-215ENST00000531924 SS18L2Q9UHA2 77 aa7.73□□□□□ -1.17
VPS28-215ENST00000531924 Q96NJ1 140 aa7.72□□□□□ -1.17
VPS28-215ENST00000531924 COX8AP10176 69 aa7.7□□□□□ -1.18
VPS28-215ENST00000531924 H0YGX0 51 aa7.69□□□□□ -1.18
VPS28-215ENST00000531924 GHRHP01286 108 aa7.67□□□□□ -1.18
VPS28-215ENST00000531924 CFC1P0CG37 223 aa7.67□□□□□ -1.18
VPS28-215ENST00000531924 NDUFV3P56181 108 aaKnown RBP7.67□□□□□ -1.18
VPS28-215ENST00000531924 TEN1Q86WV5 123 aa7.67□□□□□ -1.18
VPS28-215ENST00000531924 DLEU1O43261 78 aa7.66□□□□□ -1.18
VPS28-215ENST00000531924 FLGP20930 4061 aaPredicted RBP7.66□□□□□ -1.18
VPS28-215ENST00000531924 TRBV20-1A0A075B6N2 111 aa7.64□□□□□ -1.19
VPS28-215ENST00000531924 A0A087WSZ3 146 aa7.64□□□□□ -1.19
VPS28-215ENST00000531924 FABP2P12104 132 aa7.64□□□□□ -1.19
VPS28-215ENST00000531924 C14orf144Q96I85 54 aa7.64□□□□□ -1.19
VPS28-215ENST00000531924 A0A0B4J2C4 111 aa7.63□□□□□ -1.19
VPS28-215ENST00000531924 H3BMG7 143 aa7.63□□□□□ -1.19
VPS28-215ENST00000531924 PAM16Q9Y3D7 125 aa7.62□□□□□ -1.19
VPS28-215ENST00000531924 FAM218AQ96MZ4 157 aa7.61□□□□□ -1.19
VPS28-215ENST00000531924 C20orf166-AS1Q96NR2 134 aa7.61□□□□□ -1.19
VPS28-215ENST00000531924 HIGD1BQ9P298 99 aa7.61□□□□□ -1.19
VPS28-215ENST00000531924 TMEM238LA0A1B0GVL6 79 aa7.6□□□□□ -1.19
VPS28-215ENST00000531924 A6NJY4 79 aa7.6□□□□□ -1.19
VPS28-215ENST00000531924 SPATA45Q537H7 98 aa7.6□□□□□ -1.19
VPS28-215ENST00000531924 SIGMAR1Q99720 223 aa7.6□□□□□ -1.19
VPS28-215ENST00000531924 A0A1B0GX51 115 aa7.59□□□□□ -1.19
VPS28-215ENST00000531924 A8MUU9 505 aa7.59□□□□□ -1.19
VPS28-215ENST00000531924 VAMP8Q9BV40 100 aa7.59□□□□□ -1.19
VPS28-215ENST00000531924 PRO1854Q9UHT4 67 aa7.59□□□□□ -1.19
VPS28-215ENST00000531924 DSCR10P59022 87 aa7.58□□□□□ -1.2
VPS28-215ENST00000531924 TMA7Q9Y2S6 64 aaKnown RBP7.57□□□□□ -1.2
VPS28-215ENST00000531924 CEND1Q8N111 149 aa7.56□□□□□ -1.2
VPS28-215ENST00000531924 DNAL4O96015 105 aa7.55□□□□□ -1.2
VPS28-215ENST00000531924 LINC00313P59037 77 aa7.54□□□□□ -1.2
VPS28-215ENST00000531924 C2orf91Q6ZV80 131 aa7.54□□□□□ -1.2
VPS28-215ENST00000531924 ANKRD29Q8N6D5 301 aa7.54□□□□□ -1.2
VPS28-215ENST00000531924 IGKV4-1P06312 121 aa7.53□□□□□ -1.2
VPS28-215ENST00000531924 FAM236DA0A1B0GTK5 79 aa7.52□□□□□ -1.21
VPS28-215ENST00000531924 A0A1B0GV72 72 aa7.52□□□□□ -1.21
VPS28-215ENST00000531924 A0A1W2PNM2 257 aa7.52□□□□□ -1.21
VPS28-215ENST00000531924 H3BQ85 93 aa7.52□□□□□ -1.21
VPS28-215ENST00000531924 TRIAP1O43715 76 aa7.52□□□□□ -1.21
VPS28-215ENST00000531924 FAM236CP0DP71 79 aa7.52□□□□□ -1.21
VPS28-215ENST00000531924 PSMB2P49721 201 aa7.52□□□□□ -1.21
VPS28-215ENST00000531924 ORMDL1Q9P0S3 153 aa7.51□□□□□ -1.21
VPS28-215ENST00000531924 TRBV7-4A0A0J9YYF1 115 aa7.5□□□□□ -1.21
VPS28-215ENST00000531924 FXYD2P54710 66 aa7.49□□□□□ -1.21
VPS28-215ENST00000531924 COX6CP09669 75 aa7.48□□□□□ -1.21
VPS28-215ENST00000531924 TMEM256-PLSCR3K7ERE1 68 aa7.47□□□□□ -1.21
VPS28-215ENST00000531924 TRACP01848 142 aa7.47□□□□□ -1.21
VPS28-215ENST00000531924 RBM12B-AS1Q9P1G2 102 aa7.47□□□□□ -1.21
VPS28-215ENST00000531924 DEFB116Q30KQ4 102 aa7.46□□□□□ -1.22
VPS28-215ENST00000531924 CCKP06307 115 aa7.45□□□□□ -1.22
VPS28-215ENST00000531924 IGHV6-1A0A0B4J1U7 121 aa7.44□□□□□ -1.22
VPS28-215ENST00000531924 KRTAP9-8Q9BYQ0 159 aa7.44□□□□□ -1.22
VPS28-215ENST00000531924 HSD52Q0P140 79 aa7.43□□□□□ -1.22
VPS28-215ENST00000531924 KRTAP16-1A8MUX0 517 aa7.42□□□□□ -1.22
VPS28-215ENST00000531924 K7ERJ3 54 aa7.42□□□□□ -1.22
VPS28-215ENST00000531924 VPS25Q9BRG1 176 aa7.42□□□□□ -1.22
VPS28-215ENST00000531924 PYY3Q5JQD4 70 aa7.41□□□□□ -1.22
VPS28-215ENST00000531924 LINC00472Q9H8W2 130 aa7.41□□□□□ -1.22
VPS28-215ENST00000531924 USH2AO75445 5202 aa7.4□□□□□ -1.22
VPS28-215ENST00000531924 NOTCH2NLQ7Z3S9 236 aa7.4□□□□□ -1.22
VPS28-215ENST00000531924 UBE2V1Q13404 147 aa7.39□□□□□ -1.23
VPS28-215ENST00000531924 SCGB1C2P0DMR2 95 aa7.38□□□□□ -1.23
VPS28-215ENST00000531924 C8orf87E5RJ46 101 aa7.37□□□□□ -1.23
VPS28-215ENST00000531924 MTURNQ8N3F0 131 aa7.37□□□□□ -1.23
VPS28-215ENST00000531924 DSCR8Q96T75 97 aa7.37□□□□□ -1.23
VPS28-215ENST00000531924 A0A1B0GVX0 72 aa7.36□□□□□ -1.23
VPS28-215ENST00000531924 RBM3P98179 157 aaKnown RBP7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms