RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	ACACA	Q13085	2346 aa		2.93	□□□□□ -1.94
CD44-231	ENST00000531110		H3BNG1	76 aa		2.93	□□□□□ -1.94
CD44-231	ENST00000531110		K7EIL1	84 aa		2.93	□□□□□ -1.94
CD44-231	ENST00000531110	MKI67	P46013	3256 aa	Known RBP	2.93	□□□□□ -1.94
CD44-231	ENST00000531110	PKDREJ	Q9NTG1	2253 aa		2.93	□□□□□ -1.94
CD44-231	ENST00000531110	MAP1B	P46821	2468 aa	Known RBP	2.92	□□□□□ -1.94
CD44-231	ENST00000531110	LYNX1	P0DP58	116 aa		2.92	□□□□□ -1.94
CD44-231	ENST00000531110	IGF2R	P11717	2491 aa		2.91	□□□□□ -1.94
CD44-231	ENST00000531110		Q6ZRN7	208 aa	Predicted RBP	2.91	□□□□□ -1.94
CD44-231	ENST00000531110	CEP250	Q9BV73	2442 aa		2.91	□□□□□ -1.94
CD44-231	ENST00000531110	CENPF	P49454	3210 aa		2.91	□□□□□ -1.94
CD44-231	ENST00000531110	DEFB130B	P0DP73	79 aa		2.9	□□□□□ -1.95
CD44-231	ENST00000531110	DEFB130A	P0DP74	79 aa		2.9	□□□□□ -1.95
CD44-231	ENST00000531110	CHD7	Q9P2D1	2997 aa		2.89	□□□□□ -1.95
CD44-231	ENST00000531110	UNC80	Q8N2C7	3258 aa		2.89	□□□□□ -1.95
CD44-231	ENST00000531110	SPTA1	P02549	2419 aa		2.89	□□□□□ -1.95
CD44-231	ENST00000531110	ZFHX2	Q9C0A1	2572 aa	Predicted RBP	2.89	□□□□□ -1.95
CD44-231	ENST00000531110	DEFB123	Q8N688	67 aa		2.89	□□□□□ -1.95
CD44-231	ENST00000531110	TTC28	Q96AY4	2481 aa		2.89	□□□□□ -1.95
CD44-231	ENST00000531110	ZZEF1	O43149	2961 aa		2.89	□□□□□ -1.95
CD44-231	ENST00000531110	RANBP2	P49792	3224 aa	Known RBP	2.89	□□□□□ -1.95
CD44-231	ENST00000531110	NBEA	Q8NFP9	2946 aa		2.89	□□□□□ -1.95
CD44-231	ENST00000531110	APC2	O95996	2303 aa		2.88	□□□□□ -1.95
CD44-231	ENST00000531110	AKAP6	Q13023	2319 aa		2.88	□□□□□ -1.95
CD44-231	ENST00000531110	BRD3OS	Q6XYD6	125 aa		2.88	□□□□□ -1.95
CD44-231	ENST00000531110	KRTAP5-5	Q701N2	237 aa	Predicted RBP	2.88	□□□□□ -1.95
CD44-231	ENST00000531110	KRTAP4-3	Q9BYR4	195 aa		2.87	□□□□□ -1.95
CD44-231	ENST00000531110		R4GN34	69 aa		2.87	□□□□□ -1.95
CD44-231	ENST00000531110	NOTCH2	Q04721	2471 aa		2.87	□□□□□ -1.95
CD44-231	ENST00000531110	VCAN	P13611	3396 aa		2.87	□□□□□ -1.95
CD44-231	ENST00000531110	TENM2	Q9NT68	2774 aa		2.87	□□□□□ -1.95
CD44-231	ENST00000531110	BRCA2	P51587	3418 aa		2.86	□□□□□ -1.95
CD44-231	ENST00000531110	PCNX1	Q96RV3	2341 aa		2.85	□□□□□ -1.95
CD44-231	ENST00000531110	PIEZO1	Q92508	2521 aa		2.85	□□□□□ -1.95
CD44-231	ENST00000531110	GPR179	Q6PRD1	2367 aa		2.85	□□□□□ -1.95
CD44-231	ENST00000531110	PRUNE2	Q8WUY3	3088 aa		2.84	□□□□□ -1.96
CD44-231	ENST00000531110	LAMA2	P24043	3122 aa	Known RBP	2.84	□□□□□ -1.96
CD44-231	ENST00000531110	EP300	Q09472	2414 aa	Predicted RBP	2.83	□□□□□ -1.96
CD44-231	ENST00000531110	CFAP54	Q96N23	3096 aa		2.83	□□□□□ -1.96
CD44-231	ENST00000531110	SPACA4	Q8TDM5	124 aa		2.83	□□□□□ -1.96
CD44-231	ENST00000531110	ZDBF2	Q9HCK1	2354 aa		2.83	□□□□□ -1.96
CD44-231	ENST00000531110	CHD6	Q8TD26	2715 aa		2.83	□□□□□ -1.96
CD44-231	ENST00000531110	SPTBN5	Q9NRC6	3674 aa	Known RBP	2.82	□□□□□ -1.96
CD44-231	ENST00000531110	LINC01556	Q5JQF7	62 aa		2.82	□□□□□ -1.96
CD44-231	ENST00000531110	LAMA3	Q16787	3333 aa		2.82	□□□□□ -1.96
CD44-231	ENST00000531110	SPTBN4	Q9H254	2564 aa		2.82	□□□□□ -1.96
CD44-231	ENST00000531110	NCOR1	O75376	2440 aa		2.81	□□□□□ -1.96
CD44-231	ENST00000531110	PKD1L2	Q7Z442	2459 aa		2.81	□□□□□ -1.96
CD44-231	ENST00000531110	HTT	P42858	3142 aa		2.81	□□□□□ -1.96
CD44-231	ENST00000531110	DEFB136	Q30KP8	78 aa		2.8	□□□□□ -1.96
CD44-231	ENST00000531110	PP632	Q6XCG6	107 aa		2.8	□□□□□ -1.96
CD44-231	ENST00000531110	KRTAP13-1	Q8IUC0	172 aa		2.8	□□□□□ -1.96
CD44-231	ENST00000531110	RP1L1	Q8IWN7	2480 aa	Predicted RBP	2.8	□□□□□ -1.96
CD44-231	ENST00000531110	PTPRZ1	P23471	2315 aa	Predicted RBP	2.8	□□□□□ -1.96
CD44-231	ENST00000531110	EYS	Q5T1H1	3165 aa		2.79	□□□□□ -1.96
CD44-231	ENST00000531110	VPS13A	Q96RL7	3174 aa		2.79	□□□□□ -1.96
CD44-231	ENST00000531110	UNC79	Q9P2D8	2635 aa		2.79	□□□□□ -1.96
CD44-231	ENST00000531110	C2CD3	Q4AC94	2353 aa		2.79	□□□□□ -1.96
CD44-231	ENST00000531110		A0A096LPF7	62 aa		2.79	□□□□□ -1.96
CD44-231	ENST00000531110	DEFB124	Q8NES8	71 aa		2.79	□□□□□ -1.96
CD44-231	ENST00000531110	LCE3D	Q9BYE3	92 aa		2.79	□□□□□ -1.96
CD44-231	ENST00000531110	MAP1A	P78559	2803 aa	Predicted RBP	2.79	□□□□□ -1.96
CD44-231	ENST00000531110	MUC3A	Q02505	3323 aa		2.79	□□□□□ -1.96
CD44-231	ENST00000531110	OTOG	Q6ZRI0	2925 aa		2.79	□□□□□ -1.96
CD44-231	ENST00000531110	CACNA1H	O95180	2353 aa		2.78	□□□□□ -1.96
CD44-231	ENST00000531110	UBE2DNL	Q8IWF7	75 aa		2.78	□□□□□ -1.96
CD44-231	ENST00000531110	CHD8	Q9HCK8	2581 aa		2.78	□□□□□ -1.96
CD44-231	ENST00000531110	MUC6	Q6W4X9	2439 aa		2.78	□□□□□ -1.97
CD44-231	ENST00000531110	AKAP13	Q12802	2813 aa		2.78	□□□□□ -1.97
CD44-231	ENST00000531110	FLG2	Q5D862	2391 aa	Predicted RBP	2.78	□□□□□ -1.97
CD44-231	ENST00000531110	BDP1	A6H8Y1	2624 aa		2.77	□□□□□ -1.97
CD44-231	ENST00000531110	BAHCC1	Q9P281	2608 aa		2.77	□□□□□ -1.97
CD44-231	ENST00000531110	SPRR5	A0A1B0GTR4	108 aa		2.77	□□□□□ -1.97
CD44-231	ENST00000531110	ROS1	P08922	2347 aa		2.77	□□□□□ -1.97
CD44-231	ENST00000531110	SPART-AS1	P0CW21	52 aa		2.76	□□□□□ -1.97
CD44-231	ENST00000531110	PRLH	P81277	87 aa		2.76	□□□□□ -1.97
CD44-231	ENST00000531110	ASH1L	Q9NR48	2969 aa	Known RBP	2.76	□□□□□ -1.97
CD44-231	ENST00000531110	TRANK1	O15050	2925 aa		2.76	□□□□□ -1.97
CD44-231	ENST00000531110	PIEZO2	Q9H5I5	2752 aa		2.75	□□□□□ -1.97
CD44-231	ENST00000531110	DNAH12	Q6ZR08	3092 aa		2.74	□□□□□ -1.97
CD44-231	ENST00000531110	C10orf95	Q9H7T3	257 aa		2.74	□□□□□ -1.97
CD44-231	ENST00000531110	GVINP1	Q7Z2Y8	2422 aa		2.74	□□□□□ -1.97
CD44-231	ENST00000531110	KALRN	O60229	2985 aa		2.74	□□□□□ -1.97
CD44-231	ENST00000531110	CREBBP	Q92793	2442 aa		2.73	□□□□□ -1.97
CD44-231	ENST00000531110		S4R3F8	94 aa		2.73	□□□□□ -1.97
CD44-231	ENST00000531110	ITPR1	Q14643	2758 aa		2.73	□□□□□ -1.97
CD44-231	ENST00000531110	EPG5	Q9HCE0	2579 aa		2.72	□□□□□ -1.97
CD44-231	ENST00000531110	UBR5	O95071	2799 aa	Predicted RBP	2.72	□□□□□ -1.97
CD44-231	ENST00000531110	LCE1C	Q5T751	118 aa		2.72	□□□□□ -1.97
CD44-231	ENST00000531110	LCE1B	Q5T7P3	118 aa		2.72	□□□□□ -1.97
CD44-231	ENST00000531110	NCOR2	Q9Y618	2525 aa		2.72	□□□□□ -1.97
CD44-231	ENST00000531110	CELSR2	Q9HCU4	2923 aa		2.72	□□□□□ -1.97
CD44-231	ENST00000531110	ANKRD11	Q6UB99	2663 aa	Predicted RBP	2.71	□□□□□ -1.98
CD44-231	ENST00000531110	FRYL	O94915	3013 aa		2.71	□□□□□ -1.98
CD44-231	ENST00000531110	SETX	Q7Z333	2677 aa	Known RBP	2.71	□□□□□ -1.98
CD44-231	ENST00000531110	FASN	P49327	2511 aa	Known RBP	2.7	□□□□□ -1.98
CD44-231	ENST00000531110	KRTAP10-10	P60014	251 aa		2.7	□□□□□ -1.98
CD44-231	ENST00000531110	FRY	Q5TBA9	3013 aa		2.7	□□□□□ -1.98
CD44-231	ENST00000531110	HIVEP2	P31629	2446 aa		2.7	□□□□□ -1.98
CD44-231	ENST00000531110	CFAP47	Q6ZTR5	3102 aa		2.7	□□□□□ -1.98

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