RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 LINC00474Q9P2X8 69 aa13.27□□□□□ -0.28
VPS28-205ENST00000526204 LRCOL1A6NCL2 159 aa13.27□□□□□ -0.29
VPS28-205ENST00000526204 NBDYA0A0U1RRE5 68 aa13.26□□□□□ -0.29
VPS28-205ENST00000526204 K7EQZ3 153 aa13.26□□□□□ -0.29
VPS28-205ENST00000526204 SPRR1BP22528 89 aa13.25□□□□□ -0.29
VPS28-205ENST00000526204 NUPR2A6NF83 97 aa13.24□□□□□ -0.29
VPS28-205ENST00000526204 KRTAP11-1Q8IUC1 163 aa13.24□□□□□ -0.29
VPS28-205ENST00000526204 A0A0G2JQZ4 141 aa13.23□□□□□ -0.29
VPS28-205ENST00000526204 FAM30AQ9NZY2 134 aa13.23□□□□□ -0.29
VPS28-205ENST00000526204 LCE6AA0A183 80 aa13.21□□□□□ -0.29
VPS28-205ENST00000526204 A0A087WSZ3 146 aa13.21□□□□□ -0.3
VPS28-205ENST00000526204 HCG22E2RYF7 251 aa13.19□□□□□ -0.3
VPS28-205ENST00000526204 Q5XG85 94 aa13.19□□□□□ -0.3
VPS28-205ENST00000526204 Q6ZRN7 208 aaPredicted RBP13.18□□□□□ -0.3
VPS28-205ENST00000526204 LYSTQ99698 3801 aa13.17□□□□□ -0.3
VPS28-205ENST00000526204 DNAH10Q8IVF4 4471 aa13.16□□□□□ -0.3
VPS28-205ENST00000526204 DNAH9Q9NYC9 4486 aa13.15□□□□□ -0.3
VPS28-205ENST00000526204 C5orf47Q569G3 176 aa13.13□□□□□ -0.31
VPS28-205ENST00000526204 SMIM26A0A096LP01 95 aa13.12□□□□□ -0.31
VPS28-205ENST00000526204 C4orf26Q17RF5 130 aa13.12□□□□□ -0.31
VPS28-205ENST00000526204 DEFB116Q30KQ4 102 aa13.12□□□□□ -0.31
VPS28-205ENST00000526204 KRTAP13-1Q8IUC0 172 aa13.1□□□□□ -0.31
VPS28-205ENST00000526204 DYNC2H1Q8NCM8 4307 aaKnown RBP13.1□□□□□ -0.31
VPS28-205ENST00000526204 DNHD1Q96M86 4753 aa13.1□□□□□ -0.31
VPS28-205ENST00000526204 PANO1I0J062 215 aa13.09□□□□□ -0.31
VPS28-205ENST00000526204 SPACA4Q8TDM5 124 aa13.07□□□□□ -0.32
VPS28-205ENST00000526204 ZCCHC13Q8WW36 166 aaKnown RBP13.06□□□□□ -0.32
VPS28-205ENST00000526204 HRCT1Q6UXD1 115 aa13.03□□□□□ -0.32
VPS28-205ENST00000526204 LINC00472Q9H8W2 130 aa13.03□□□□□ -0.32
VPS28-205ENST00000526204 WFDC13Q8IUB5 93 aa13.03□□□□□ -0.32
VPS28-205ENST00000526204 PRR15Q8IV56 129 aa13.03□□□□□ -0.32
VPS28-205ENST00000526204 CSMD3Q7Z407 3707 aa13.02□□□□□ -0.33
VPS28-205ENST00000526204 RPL37AP61513 92 aaKnown RBP13.02□□□□□ -0.33
VPS28-205ENST00000526204 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.02□□□□□ -0.33
VPS28-205ENST00000526204 TENM2Q9NT68 2774 aa13.01□□□□□ -0.33
VPS28-205ENST00000526204 A0A087WTM6 91 aa13.01□□□□□ -0.33
VPS28-205ENST00000526204 A8MWP4 228 aa13.01□□□□□ -0.33
VPS28-205ENST00000526204 KRTAP29-1A8MX34 341 aaPredicted RBP13.01□□□□□ -0.33
VPS28-205ENST00000526204 FP248Q71RG6 208 aaPredicted RBP13□□□□□ -0.33
VPS28-205ENST00000526204 DNAH7Q8WXX0 4024 aa12.99□□□□□ -0.33
VPS28-205ENST00000526204 CASC2Q6XLA1 102 aa12.97□□□□□ -0.33
VPS28-205ENST00000526204 PRKDCP78527 4128 aaKnown RBP12.97□□□□□ -0.33
VPS28-205ENST00000526204 MEGF8Q7Z7M0 2845 aa12.96□□□□□ -0.33
VPS28-205ENST00000526204 MP68P56378 58 aa12.96□□□□□ -0.33
VPS28-205ENST00000526204 KRTAP21-3Q3LHN1 58 aa12.95□□□□□ -0.34
VPS28-205ENST00000526204 NDUFB1O75438 58 aa12.94□□□□□ -0.34
VPS28-205ENST00000526204 SRRM2Q9UQ35 2752 aaKnown RBP12.94□□□□□ -0.34
VPS28-205ENST00000526204 LINC00483Q53H64 154 aa12.94□□□□□ -0.34
VPS28-205ENST00000526204 ZNF706Q9Y5V0 76 aaPredicted RBP12.93□□□□□ -0.34
VPS28-205ENST00000526204 PLECQ15149 4684 aaKnown RBP12.92□□□□□ -0.34
VPS28-205ENST00000526204 RTL8CO15255 209 aa12.91□□□□□ -0.34
VPS28-205ENST00000526204 IGLV9-49A0A0B4J1Y8 123 aa12.9□□□□□ -0.34
VPS28-205ENST00000526204 H3BPC8 53 aa12.89□□□□□ -0.35
VPS28-205ENST00000526204 Q6ZR54 194 aa12.89□□□□□ -0.35
VPS28-205ENST00000526204 FAM229BQ4G0N7 80 aa12.88□□□□□ -0.35
VPS28-205ENST00000526204 IGLV5-52A0A0A0MRZ9 124 aa12.87□□□□□ -0.35
VPS28-205ENST00000526204 PLAC8Q9NZF1 115 aa12.87□□□□□ -0.35
VPS28-205ENST00000526204 hDV103S1A0JD37 113 aa12.86□□□□□ -0.35
VPS28-205ENST00000526204 PSORS1C2Q9UIG4 136 aa12.86□□□□□ -0.35
VPS28-205ENST00000526204 CYP4F30PQ9H0H9 118 aa12.85□□□□□ -0.35
VPS28-205ENST00000526204 TRAV22A0A0B4J277 110 aa12.85□□□□□ -0.35
VPS28-205ENST00000526204 LINC00208Q96KT6 92 aa12.85□□□□□ -0.35
VPS28-205ENST00000526204 H0Y9P7 68 aa12.83□□□□□ -0.35
VPS28-205ENST00000526204 MMP24-AS1A0A0U1RRL7 71 aa12.83□□□□□ -0.36
VPS28-205ENST00000526204 C1orf64Q8NEQ6 169 aa12.82□□□□□ -0.36
VPS28-205ENST00000526204 Q96NJ1 140 aa12.82□□□□□ -0.36
VPS28-205ENST00000526204 ZNF861PO60384 105 aa12.81□□□□□ -0.36
VPS28-205ENST00000526204 WWC2-AS2Q96NR7 200 aa12.81□□□□□ -0.36
VPS28-205ENST00000526204 STARD9Q9P2P6 4700 aa12.8□□□□□ -0.36
VPS28-205ENST00000526204 MPLKIPQ8TAP9 179 aa12.78□□□□□ -0.36
VPS28-205ENST00000526204 C1orf134Q5TEV5 83 aa12.77□□□□□ -0.36
VPS28-205ENST00000526204 VPS13DQ5THJ4 4388 aa12.77□□□□□ -0.36
VPS28-205ENST00000526204 MOBPQ13875 183 aa12.76□□□□□ -0.37
VPS28-205ENST00000526204 SPANXA2-OT1Q8N9U9 137 aa12.75□□□□□ -0.37
VPS28-205ENST00000526204 ASB16-AS1Q495Z4 193 aa12.74□□□□□ -0.37
VPS28-205ENST00000526204 LINC00336Q6ZUF6 198 aa12.74□□□□□ -0.37
VPS28-205ENST00000526204 TP53AIP1Q9HCN2 124 aa12.73□□□□□ -0.37
VPS28-205ENST00000526204 PRR4Q16378 134 aa12.72□□□□□ -0.37
VPS28-205ENST00000526204 C8orf17Q9NRJ1 99 aa12.7□□□□□ -0.38
VPS28-205ENST00000526204 A0A1B0GVX0 72 aa12.68□□□□□ -0.38
VPS28-205ENST00000526204 CDK2AP2O75956 126 aa12.68□□□□□ -0.38
VPS28-205ENST00000526204 ANAPC11Q9NYG5 84 aa12.68□□□□□ -0.38
VPS28-205ENST00000526204 PRO0628Q9UI54 55 aa12.68□□□□□ -0.38
VPS28-205ENST00000526204 FBN3Q75N90 2809 aa12.68□□□□□ -0.38
VPS28-205ENST00000526204 HECTD4Q9Y4D8 3996 aa12.67□□□□□ -0.38
VPS28-205ENST00000526204 Q1T7F1 81 aa12.67□□□□□ -0.38
VPS28-205ENST00000526204 IGLV7-43P04211 117 aa12.66□□□□□ -0.38
VPS28-205ENST00000526204 IGHV6-1A0A0B4J1U7 121 aa12.64□□□□□ -0.39
VPS28-205ENST00000526204 TGP01266 2768 aa12.62□□□□□ -0.39
VPS28-205ENST00000526204 LY6G6CO95867 125 aa12.62□□□□□ -0.39
VPS28-205ENST00000526204 MRPL34Q9BQ48 92 aaKnown RBP12.58□□□□□ -0.4
VPS28-205ENST00000526204 KMT2AQ03164 3969 aa12.57□□□□□ -0.4
VPS28-205ENST00000526204 CD164Q04900 197 aa12.56□□□□□ -0.4
VPS28-205ENST00000526204 IGLV7-46A0A075B6I9 117 aa12.55□□□□□ -0.4
VPS28-205ENST00000526204 NDUFS5O43920 106 aa12.55□□□□□ -0.4
VPS28-205ENST00000526204 BRK1Q8WUW1 75 aa12.55□□□□□ -0.4
VPS28-205ENST00000526204 V9GYY9 64 aa12.55□□□□□ -0.4
VPS28-205ENST00000526204 SSBP3-AS1Q7Z2R9 100 aa12.54□□□□□ -0.4
VPS28-205ENST00000526204 DNAH17Q9UFH2 4485 aa12.53□□□□□ -0.4
VPS28-205ENST00000526204 DNAH2Q9P225 4427 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms