RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 SNCGO76070 127 aa5.93□□□□□ -1.46
VPS28-204ENST00000526054 TCL1BO95988 128 aa5.93□□□□□ -1.46
VPS28-204ENST00000526054 ST20-AS1Q8NBB2 130 aa5.93□□□□□ -1.46
VPS28-204ENST00000526054 CLEC2BQ92478 149 aa5.93□□□□□ -1.46
VPS28-204ENST00000526054 A0A0U1RQV1 116 aa5.92□□□□□ -1.46
VPS28-204ENST00000526054 LST1O00453 97 aa5.92□□□□□ -1.46
VPS28-204ENST00000526054 C3orf22Q8N5N4 141 aa5.92□□□□□ -1.46
VPS28-204ENST00000526054 A0A1B0GX51 115 aa5.91□□□□□ -1.46
VPS28-204ENST00000526054 TRACP01848 142 aa5.91□□□□□ -1.46
VPS28-204ENST00000526054 SPRR1BP22528 89 aa5.91□□□□□ -1.46
VPS28-204ENST00000526054 LINC00304Q8N9R0 145 aa5.91□□□□□ -1.46
VPS28-204ENST00000526054 IGLV9-49A0A0B4J1Y8 123 aa5.9□□□□□ -1.46
VPS28-204ENST00000526054 H3BMG7 143 aa5.9□□□□□ -1.46
VPS28-204ENST00000526054 DNAL4O96015 105 aa5.9□□□□□ -1.46
VPS28-204ENST00000526054 LINC00575Q6W349 94 aa5.9□□□□□ -1.46
VPS28-204ENST00000526054 FAM218AQ96MZ4 157 aa5.9□□□□□ -1.46
VPS28-204ENST00000526054 TEX49A0A1B0GTD5 131 aa5.89□□□□□ -1.47
VPS28-204ENST00000526054 hADV29S1A0JD25 119 aa5.89□□□□□ -1.47
VPS28-204ENST00000526054 UBE2V1Q13404 147 aa5.89□□□□□ -1.47
VPS28-204ENST00000526054 MOBPQ13875 183 aa5.89□□□□□ -1.47
VPS28-204ENST00000526054 C9orf153Q5TBE3 101 aa5.89□□□□□ -1.47
VPS28-204ENST00000526054 DEFB105AQ8NG35 78 aa5.89□□□□□ -1.47
VPS28-204ENST00000526054 LAMTOR3Q9UHA4 124 aa5.89□□□□□ -1.47
VPS28-204ENST00000526054 IGLV5-48A0A075B6I7 105 aa5.88□□□□□ -1.47
VPS28-204ENST00000526054 Q8NBF4 154 aa5.88□□□□□ -1.47
VPS28-204ENST00000526054 C9JAW5 83 aa5.87□□□□□ -1.47
VPS28-204ENST00000526054 C4orf48Q5BLP8 95 aa5.87□□□□□ -1.47
VPS28-204ENST00000526054 SPAG11AQ6PDA7 123 aa5.87□□□□□ -1.47
VPS28-204ENST00000526054 SSBP3-AS1Q7Z2R9 100 aa5.87□□□□□ -1.47
VPS28-204ENST00000526054 GHRHP01286 108 aa5.86□□□□□ -1.47
VPS28-204ENST00000526054 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.86□□□□□ -1.47
VPS28-204ENST00000526054 Q6ZQY7 126 aa5.86□□□□□ -1.47
VPS28-204ENST00000526054 LINC01547P58512 204 aaPredicted RBP5.85□□□□□ -1.47
VPS28-204ENST00000526054 RETNLBQ9BQ08 111 aa5.85□□□□□ -1.47
VPS28-204ENST00000526054 ORMDL1Q9P0S3 153 aa5.85□□□□□ -1.47
VPS28-204ENST00000526054 FAT4Q6V0I7 4981 aa5.85□□□□□ -1.47
VPS28-204ENST00000526054 F8W1H4 67 aa5.84□□□□□ -1.47
VPS28-204ENST00000526054 H3BQ85 93 aa5.84□□□□□ -1.47
VPS28-204ENST00000526054 H3BT86 120 aa5.84□□□□□ -1.47
VPS28-204ENST00000526054 OCIAD2Q56VL3 154 aa5.84□□□□□ -1.47
VPS28-204ENST00000526054 F8WEM9 126 aa5.83□□□□□ -1.48
VPS28-204ENST00000526054 Q8N377 158 aa5.83□□□□□ -1.48
VPS28-204ENST00000526054 MTURNQ8N3F0 131 aa5.83□□□□□ -1.48
VPS28-204ENST00000526054 PPDPFLQ8WWR9 84 aa5.83□□□□□ -1.48
VPS28-204ENST00000526054 SPINK1P00995 79 aa5.82□□□□□ -1.48
VPS28-204ENST00000526054 BAALC-AS2P0C853 105 aa5.82□□□□□ -1.48
VPS28-204ENST00000526054 SMIM29Q86T20 159 aa5.82□□□□□ -1.48
VPS28-204ENST00000526054 ANKRD29Q8N6D5 301 aa5.82□□□□□ -1.48
VPS28-204ENST00000526054 PRO0461Q9UI25 63 aa5.82□□□□□ -1.48
VPS28-204ENST00000526054 TMEM256-PLSCR3K7ERE1 68 aa5.81□□□□□ -1.48
VPS28-204ENST00000526054 RPS29P62273 56 aaKnown RBP5.8□□□□□ -1.48
VPS28-204ENST00000526054 TPRXLQ17RH7 258 aa5.8□□□□□ -1.48
VPS28-204ENST00000526054 KRTAP9-2Q9BYQ4 174 aa5.8□□□□□ -1.48
VPS28-204ENST00000526054 CDIP1Q9H305 208 aa5.8□□□□□ -1.48
VPS28-204ENST00000526054 SMCPP49901 116 aaPredicted RBP5.79□□□□□ -1.48
VPS28-204ENST00000526054 MUC17Q685J3 4493 aa5.79□□□□□ -1.48
VPS28-204ENST00000526054 IGLV7-46A0A075B6I9 117 aa5.78□□□□□ -1.48
VPS28-204ENST00000526054 LCE2AQ5TA79 106 aaPredicted RBP5.78□□□□□ -1.48
VPS28-204ENST00000526054 CD164Q04900 197 aa5.77□□□□□ -1.49
VPS28-204ENST00000526054 Q6JHZ5 121 aa5.77□□□□□ -1.49
VPS28-204ENST00000526054 LIMD2Q9BT23 127 aa5.77□□□□□ -1.49
VPS28-204ENST00000526054 HRCT1Q6UXD1 115 aa5.76□□□□□ -1.49
VPS28-204ENST00000526054 TEN1Q86WV5 123 aa5.76□□□□□ -1.49
VPS28-204ENST00000526054 IGLV8-61A0A075B6I0 122 aa5.75□□□□□ -1.49
VPS28-204ENST00000526054 NDUFV3P56181 108 aaKnown RBP5.75□□□□□ -1.49
VPS28-204ENST00000526054 ETDBQ3ZM63 59 aa5.75□□□□□ -1.49
VPS28-204ENST00000526054 JMJD7-PLA2G4BH0Y9G9 81 aa5.74□□□□□ -1.49
VPS28-204ENST00000526054 FP248Q71RG6 208 aaPredicted RBP5.74□□□□□ -1.49
VPS28-204ENST00000526054 A0A0G2JQZ4 141 aa5.72□□□□□ -1.49
VPS28-204ENST00000526054 IGFL1Q6UW32 110 aa5.72□□□□□ -1.49
VPS28-204ENST00000526054 A0A1B0GV72 72 aa5.71□□□□□ -1.5
VPS28-204ENST00000526054 RBM3P98179 157 aaKnown RBP5.71□□□□□ -1.5
VPS28-204ENST00000526054 OBSCN-AS1Q96MR7 158 aa5.71□□□□□ -1.5
VPS28-204ENST00000526054 Q5XG85 94 aa5.7□□□□□ -1.5
VPS28-204ENST00000526054 DSCR8Q96T75 97 aa5.7□□□□□ -1.5
VPS28-204ENST00000526054 C14orf132Q9NPU4 83 aa5.69□□□□□ -1.5
VPS28-204ENST00000526054 LOC110117498A0A087WWA1 95 aa5.68□□□□□ -1.5
VPS28-204ENST00000526054 TRBV7-7A0A0K0K1E9 115 aa5.68□□□□□ -1.5
VPS28-204ENST00000526054 PDE6GP18545 87 aa5.68□□□□□ -1.5
VPS28-204ENST00000526054 C21orf62-AS1Q17RA5 79 aa5.68□□□□□ -1.5
VPS28-204ENST00000526054 TRBV7-4A0A0J9YYF1 115 aa5.67□□□□□ -1.5
VPS28-204ENST00000526054 J3QR89 54 aa5.67□□□□□ -1.5
VPS28-204ENST00000526054 KRTAP13-3Q3SY46 172 aa5.67□□□□□ -1.5
VPS28-204ENST00000526054 Q6Q795 121 aa5.66□□□□□ -1.5
VPS28-204ENST00000526054 KRTAP9-6A0A140TA67 174 aa5.65□□□□□ -1.5
VPS28-204ENST00000526054 SS18L2Q9UHA2 77 aa5.65□□□□□ -1.5
VPS28-204ENST00000526054 K7ERU9 68 aa5.64□□□□□ -1.51
VPS28-204ENST00000526054 CCKP06307 115 aa5.64□□□□□ -1.51
VPS28-204ENST00000526054 ASB16-AS1Q495Z4 193 aa5.64□□□□□ -1.51
VPS28-204ENST00000526054 Q6ZQT0 140 aa5.64□□□□□ -1.51
VPS28-204ENST00000526054 C1orf195Q5TG92 126 aa5.63□□□□□ -1.51
VPS28-204ENST00000526054 VPS25Q9BRG1 176 aa5.63□□□□□ -1.51
VPS28-204ENST00000526054 SEC61BP60468 96 aaKnown RBP5.62□□□□□ -1.51
VPS28-204ENST00000526054 A0A087WSZ3 146 aa5.61□□□□□ -1.51
VPS28-204ENST00000526054 FAM240AA0A1B0GVK7 77 aa5.61□□□□□ -1.51
VPS28-204ENST00000526054 A0A1W2PNM2 257 aa5.61□□□□□ -1.51
VPS28-204ENST00000526054 ACYP1P07311 99 aa5.61□□□□□ -1.51
VPS28-204ENST00000526054 A0A1B0GW54 56 aa5.6□□□□□ -1.51
VPS28-204ENST00000526054 KRTAP4-1Q9BYQ7 146 aa5.58□□□□□ -1.52
VPS28-204ENST00000526054 C9orf92A6NGG3 77 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms