RNA–Protein interactions for RNA: ENST00000517578.1

HMGB1P19-201, Transcript of high mobility group box 1 pseudogene 19, humanhuman

BASIC

Gene HMGB1P19, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P19-201ENST00000517578 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP2.73□□□□□ -1.97
HMGB1P19-201ENST00000517578 ANKRD17O75179 2603 aaKnown RBP2.72□□□□□ -1.97
HMGB1P19-201ENST00000517578 CREBBPQ92793 2442 aa2.72□□□□□ -1.97
HMGB1P19-201ENST00000517578 A0A1W2PNN7 141 aa2.72□□□□□ -1.97
HMGB1P19-201ENST00000517578 H0YAA0 97 aa2.72□□□□□ -1.97
HMGB1P19-201ENST00000517578 PRLHP81277 87 aa2.71□□□□□ -1.98
HMGB1P19-201ENST00000517578 RPL37P61927 97 aaKnown RBP2.7□□□□□ -1.98
HMGB1P19-201ENST00000517578 ANKHD1Q8IWZ3 2542 aaKnown RBP2.69□□□□□ -1.98
HMGB1P19-201ENST00000517578 HTN3P15516 51 aa2.69□□□□□ -1.98
HMGB1P19-201ENST00000517578 NCOR1O75376 2440 aa2.68□□□□□ -1.98
HMGB1P19-201ENST00000517578 KRTAP7-1Q8IUC3 87 aa2.68□□□□□ -1.98
HMGB1P19-201ENST00000517578 VPS13AQ96RL7 3174 aa2.68□□□□□ -1.98
HMGB1P19-201ENST00000517578 UNC80Q8N2C7 3258 aa2.67□□□□□ -1.98
HMGB1P19-201ENST00000517578 EP400Q96L91 3159 aa2.67□□□□□ -1.98
HMGB1P19-201ENST00000517578 K7EIL1 84 aa2.67□□□□□ -1.98
HMGB1P19-201ENST00000517578 SPTAN1Q13813 2472 aaKnown RBP2.67□□□□□ -1.98
HMGB1P19-201ENST00000517578 FRYQ5TBA9 3013 aa2.67□□□□□ -1.98
HMGB1P19-201ENST00000517578 SZT2Q5T011 3432 aa2.66□□□□□ -1.98
HMGB1P19-201ENST00000517578 A0A096LNI7 61 aa2.66□□□□□ -1.98
HMGB1P19-201ENST00000517578 LCE3CQ5T5A8 94 aa2.66□□□□□ -1.98
HMGB1P19-201ENST00000517578 TRANK1O15050 2925 aa2.66□□□□□ -1.98
HMGB1P19-201ENST00000517578 PIEZO2Q9H5I5 2752 aa2.66□□□□□ -1.98
HMGB1P19-201ENST00000517578 SPG11Q96JI7 2443 aa2.66□□□□□ -1.98
HMGB1P19-201ENST00000517578 DEFB124Q8NES8 71 aa2.65□□□□□ -1.99
HMGB1P19-201ENST00000517578 PLAC4Q8WY50 150 aa2.65□□□□□ -1.99
HMGB1P19-201ENST00000517578 KALRNO60229 2985 aa2.65□□□□□ -1.99
HMGB1P19-201ENST00000517578 ZDBF2Q9HCK1 2354 aa2.64□□□□□ -1.99
HMGB1P19-201ENST00000517578 A0A1W2PPR1 153 aa2.64□□□□□ -1.99
HMGB1P19-201ENST00000517578 SPINK1P00995 79 aa2.64□□□□□ -1.99
HMGB1P19-201ENST00000517578 KRTAP10-3P60369 221 aa2.64□□□□□ -1.99
HMGB1P19-201ENST00000517578 TPRXLQ17RH7 258 aa2.64□□□□□ -1.99
HMGB1P19-201ENST00000517578 DEFB135Q30KP9 77 aa2.64□□□□□ -1.99
HMGB1P19-201ENST00000517578 CEP290O15078 2479 aa2.64□□□□□ -1.99
HMGB1P19-201ENST00000517578 A0A1B0GVY2 172 aa2.63□□□□□ -1.99
HMGB1P19-201ENST00000517578 FRYLO94915 3013 aa2.63□□□□□ -1.99
HMGB1P19-201ENST00000517578 TRIOO75962 3097 aa2.62□□□□□ -1.99
HMGB1P19-201ENST00000517578 CSPG4Q6UVK1 2322 aa2.62□□□□□ -1.99
HMGB1P19-201ENST00000517578 PRUNE2Q8WUY3 3088 aa2.62□□□□□ -1.99
HMGB1P19-201ENST00000517578 KRTAP13-1Q8IUC0 172 aa2.62□□□□□ -1.99
HMGB1P19-201ENST00000517578 ALMS1Q8TCU4 4167 aa2.62□□□□□ -1.99
HMGB1P19-201ENST00000517578 CFAP54Q96N23 3096 aa2.62□□□□□ -1.99
HMGB1P19-201ENST00000517578 CHD7Q9P2D1 2997 aa2.61□□□□□ -1.99
HMGB1P19-201ENST00000517578 GVINP1Q7Z2Y8 2422 aa2.61□□□□□ -1.99
HMGB1P19-201ENST00000517578 IGF2RP11717 2491 aa2.61□□□□□ -1.99
HMGB1P19-201ENST00000517578 SPINK6Q6UWN8 80 aa2.61□□□□□ -1.99
HMGB1P19-201ENST00000517578 SPTBN4Q9H254 2564 aa2.61□□□□□ -1.99
HMGB1P19-201ENST00000517578 DNAH14Q0VDD8 3507 aa2.61□□□□□ -1.99
HMGB1P19-201ENST00000517578 MKI67P46013 3256 aaKnown RBP2.6□□□□□ -1.99
HMGB1P19-201ENST00000517578 DEFB4AO15263 64 aa2.6□□□□□ -1.99
HMGB1P19-201ENST00000517578 MAPK1IP1LQ8NDC0 245 aa2.6□□□□□ -1.99
HMGB1P19-201ENST00000517578 MAP1AP78559 2803 aaPredicted RBP2.6□□□□□ -1.99
HMGB1P19-201ENST00000517578 CHD9Q3L8U1 2897 aa2.6□□□□□ -1.99
HMGB1P19-201ENST00000517578 AKAP13Q12802 2813 aa2.6□□□□□ -1.99
HMGB1P19-201ENST00000517578 XIRP2A4UGR9 3374 aa2.59□□□□□ -1.99
HMGB1P19-201ENST00000517578 CFAP47Q6ZTR5 3102 aa2.59□□□□□ -1.99
HMGB1P19-201ENST00000517578 NBASA2RRP1 2371 aa2.59□□□□□ -2
HMGB1P19-201ENST00000517578 C5orf42Q9H799 3197 aa2.59□□□□□ -2
HMGB1P19-201ENST00000517578 NCOR2Q9Y618 2525 aa2.59□□□□□ -2
HMGB1P19-201ENST00000517578 DSPP15924 2871 aaKnown RBP2.58□□□□□ -2
HMGB1P19-201ENST00000517578 PRO2289Q9P1D8 64 aa2.58□□□□□ -2
HMGB1P19-201ENST00000517578 LAMA2P24043 3122 aaKnown RBP2.58□□□□□ -2
HMGB1P19-201ENST00000517578 ITPR1Q14643 2758 aa2.58□□□□□ -2
HMGB1P19-201ENST00000517578 ABCA2Q9BZC7 2435 aa2.58□□□□□ -2
HMGB1P19-201ENST00000517578 WDFY4Q6ZS81 3184 aa2.57□□□□□ -2
HMGB1P19-201ENST00000517578 TYMSOSQ8TAI1 123 aa2.57□□□□□ -2
HMGB1P19-201ENST00000517578 OBSCNQ5VST9 7968 aa2.57□□□□□ -2
HMGB1P19-201ENST00000517578 TENM2Q9NT68 2774 aa2.57□□□□□ -2
HMGB1P19-201ENST00000517578 CHD6Q8TD26 2715 aa2.56□□□□□ -2
HMGB1P19-201ENST00000517578 PRRC2CQ9Y520 2896 aaKnown RBP2.55□□□□□ -2
HMGB1P19-201ENST00000517578 TACC2O95359 2948 aa2.55□□□□□ -2
HMGB1P19-201ENST00000517578 HTTP42858 3142 aa2.54□□□□□ -2
HMGB1P19-201ENST00000517578 UBE2DNLQ8IWF7 75 aa2.54□□□□□ -2
HMGB1P19-201ENST00000517578 FLG2Q5D862 2391 aaPredicted RBP2.54□□□□□ -2
HMGB1P19-201ENST00000517578 APLNQ9ULZ1 77 aa2.53□□□□□ -2
HMGB1P19-201ENST00000517578 TLN1Q9Y490 2541 aaKnown RBP2.52□□□□□ -2.01
HMGB1P19-201ENST00000517578 INE1O15225 51 aa2.52□□□□□ -2.01
HMGB1P19-201ENST00000517578 KRTAP4-3Q9BYR4 195 aa2.52□□□□□ -2.01
HMGB1P19-201ENST00000517578 RIF1Q5UIP0 2472 aaKnown RBP2.52□□□□□ -2.01
HMGB1P19-201ENST00000517578 PP632Q6XCG6 107 aa2.51□□□□□ -2.01
HMGB1P19-201ENST00000517578 C10orf95Q9H7T3 257 aa2.51□□□□□ -2.01
HMGB1P19-201ENST00000517578 S4R3F8 94 aa2.51□□□□□ -2.01
HMGB1P19-201ENST00000517578 LAMA1P25391 3075 aa2.5□□□□□ -2.01
HMGB1P19-201ENST00000517578 USP34Q70CQ2 3546 aa2.5□□□□□ -2.01
HMGB1P19-201ENST00000517578 Q6ZRN7 208 aaPredicted RBP2.5□□□□□ -2.01
HMGB1P19-201ENST00000517578 DEFB123Q8N688 67 aa2.5□□□□□ -2.01
HMGB1P19-201ENST00000517578 TLN2Q9Y4G6 2542 aa2.5□□□□□ -2.01
HMGB1P19-201ENST00000517578 HIVEP2P31629 2446 aa2.49□□□□□ -2.01
HMGB1P19-201ENST00000517578 REV3LO60673 3130 aa2.49□□□□□ -2.01
HMGB1P19-201ENST00000517578 DMXL2Q8TDJ6 3036 aa2.49□□□□□ -2.01
HMGB1P19-201ENST00000517578 DCHS1Q96JQ0 3298 aa2.48□□□□□ -2.01
HMGB1P19-201ENST00000517578 ATRXP46100 2492 aa2.48□□□□□ -2.01
HMGB1P19-201ENST00000517578 FREM2Q5SZK8 3169 aa2.47□□□□□ -2.01
HMGB1P19-201ENST00000517578 SPACA4Q8TDM5 124 aa2.47□□□□□ -2.01
HMGB1P19-201ENST00000517578 FN1P02751 2386 aaKnown RBP2.47□□□□□ -2.01
HMGB1P19-201ENST00000517578 ASH1LQ9NR48 2969 aaKnown RBP2.47□□□□□ -2.01
HMGB1P19-201ENST00000517578 SONP18583 2426 aaKnown RBP2.47□□□□□ -2.01
HMGB1P19-201ENST00000517578 F8P00451 2351 aa2.46□□□□□ -2.01
HMGB1P19-201ENST00000517578 A0A0D9SG42 100 aa2.46□□□□□ -2.02
HMGB1P19-201ENST00000517578 M0QZ58 72 aa2.46□□□□□ -2.02
HMGB1P19-201ENST00000517578 SPTBN5Q9NRC6 3674 aaKnown RBP2.46□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms