RNA–Protein interactions for RNA: ENST00000517578.1

HMGB1P19-201, Transcript of high mobility group box 1 pseudogene 19, humanhuman

BASIC

Gene HMGB1P19, Length 577 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P19-201ENST00000517578 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP2.73□□□□□ -1.97
HMGB1P19-201ENST00000517578 ANKRD17O75179 2603 aaKnown RBP2.72□□□□□ -1.97
HMGB1P19-201ENST00000517578 CREBBPQ92793 2442 aa2.72□□□□□ -1.97
HMGB1P19-201ENST00000517578 A0A1W2PNN7 141 aa2.72□□□□□ -1.97
HMGB1P19-201ENST00000517578 H0YAA0 97 aa2.72□□□□□ -1.97
HMGB1P19-201ENST00000517578 PRLHP81277 87 aa2.71□□□□□ -1.98
HMGB1P19-201ENST00000517578 RPL37P61927 97 aaKnown RBP2.7□□□□□ -1.98
HMGB1P19-201ENST00000517578 ANKHD1Q8IWZ3 2542 aaKnown RBP2.69□□□□□ -1.98
HMGB1P19-201ENST00000517578 HTN3P15516 51 aa2.69□□□□□ -1.98
HMGB1P19-201ENST00000517578 NCOR1O75376 2440 aa2.68□□□□□ -1.98
HMGB1P19-201ENST00000517578 KRTAP7-1Q8IUC3 87 aa2.68□□□□□ -1.98
HMGB1P19-201ENST00000517578 VPS13AQ96RL7 3174 aa2.68□□□□□ -1.98
HMGB1P19-201ENST00000517578 UNC80Q8N2C7 3258 aa2.67□□□□□ -1.98
HMGB1P19-201ENST00000517578 EP400Q96L91 3159 aa2.67□□□□□ -1.98
HMGB1P19-201ENST00000517578 K7EIL1 84 aa2.67□□□□□ -1.98
HMGB1P19-201ENST00000517578 SPTAN1Q13813 2472 aaKnown RBP2.67□□□□□ -1.98
HMGB1P19-201ENST00000517578 FRYQ5TBA9 3013 aa2.67□□□□□ -1.98
HMGB1P19-201ENST00000517578 SZT2Q5T011 3432 aa2.66□□□□□ -1.98
HMGB1P19-201ENST00000517578 A0A096LNI7 61 aa2.66□□□□□ -1.98
HMGB1P19-201ENST00000517578 LCE3CQ5T5A8 94 aa2.66□□□□□ -1.98
HMGB1P19-201ENST00000517578 TRANK1O15050 2925 aa2.66□□□□□ -1.98
HMGB1P19-201ENST00000517578 PIEZO2Q9H5I5 2752 aa2.66□□□□□ -1.98
HMGB1P19-201ENST00000517578 SPG11Q96JI7 2443 aa2.66□□□□□ -1.98
HMGB1P19-201ENST00000517578 DEFB124Q8NES8 71 aa2.65□□□□□ -1.99
HMGB1P19-201ENST00000517578 PLAC4Q8WY50 150 aa2.65□□□□□ -1.99
HMGB1P19-201ENST00000517578 KALRNO60229 2985 aa2.65□□□□□ -1.99
HMGB1P19-201ENST00000517578 ZDBF2Q9HCK1 2354 aa2.64□□□□□ -1.99
HMGB1P19-201ENST00000517578 A0A1W2PPR1 153 aa2.64□□□□□ -1.99
HMGB1P19-201ENST00000517578 SPINK1P00995 79 aa2.64□□□□□ -1.99
HMGB1P19-201ENST00000517578 KRTAP10-3P60369 221 aa2.64□□□□□ -1.99
HMGB1P19-201ENST00000517578 TPRXLQ17RH7 258 aa2.64□□□□□ -1.99
HMGB1P19-201ENST00000517578 DEFB135Q30KP9 77 aa2.64□□□□□ -1.99
HMGB1P19-201ENST00000517578 CEP290O15078 2479 aa2.64□□□□□ -1.99
HMGB1P19-201ENST00000517578 A0A1B0GVY2 172 aa2.63□□□□□ -1.99
HMGB1P19-201ENST00000517578 FRYLO94915 3013 aa2.63□□□□□ -1.99
HMGB1P19-201ENST00000517578 TRIOO75962 3097 aa2.62□□□□□ -1.99
HMGB1P19-201ENST00000517578 CSPG4Q6UVK1 2322 aa2.62□□□□□ -1.99
HMGB1P19-201ENST00000517578 PRUNE2Q8WUY3 3088 aa2.62□□□□□ -1.99
HMGB1P19-201ENST00000517578 KRTAP13-1Q8IUC0 172 aa2.62□□□□□ -1.99
HMGB1P19-201ENST00000517578 ALMS1Q8TCU4 4167 aa2.62□□□□□ -1.99
HMGB1P19-201ENST00000517578 CFAP54Q96N23 3096 aa2.62□□□□□ -1.99
HMGB1P19-201ENST00000517578 CHD7Q9P2D1 2997 aa2.61□□□□□ -1.99
HMGB1P19-201ENST00000517578 GVINP1Q7Z2Y8 2422 aa2.61□□□□□ -1.99
HMGB1P19-201ENST00000517578 IGF2RP11717 2491 aa2.61□□□□□ -1.99
HMGB1P19-201ENST00000517578 SPINK6Q6UWN8 80 aa2.61□□□□□ -1.99
HMGB1P19-201ENST00000517578 SPTBN4Q9H254 2564 aa2.61□□□□□ -1.99
HMGB1P19-201ENST00000517578 DNAH14Q0VDD8 3507 aa2.61□□□□□ -1.99
HMGB1P19-201ENST00000517578 MKI67P46013 3256 aaKnown RBP2.6□□□□□ -1.99
HMGB1P19-201ENST00000517578 DEFB4AO15263 64 aa2.6□□□□□ -1.99
HMGB1P19-201ENST00000517578 MAPK1IP1LQ8NDC0 245 aa2.6□□□□□ -1.99
HMGB1P19-201ENST00000517578 MAP1AP78559 2803 aaPredicted RBP2.6□□□□□ -1.99
HMGB1P19-201ENST00000517578 CHD9Q3L8U1 2897 aa2.6□□□□□ -1.99
HMGB1P19-201ENST00000517578 AKAP13Q12802 2813 aa2.6□□□□□ -1.99
HMGB1P19-201ENST00000517578 XIRP2A4UGR9 3374 aa2.59□□□□□ -1.99
HMGB1P19-201ENST00000517578 CFAP47Q6ZTR5 3102 aa2.59□□□□□ -1.99
HMGB1P19-201ENST00000517578 NBASA2RRP1 2371 aa2.59□□□□□ -2
HMGB1P19-201ENST00000517578 C5orf42Q9H799 3197 aa2.59□□□□□ -2
HMGB1P19-201ENST00000517578 NCOR2Q9Y618 2525 aa2.59□□□□□ -2
HMGB1P19-201ENST00000517578 DSPP15924 2871 aaKnown RBP2.58□□□□□ -2
HMGB1P19-201ENST00000517578 PRO2289Q9P1D8 64 aa2.58□□□□□ -2
HMGB1P19-201ENST00000517578 LAMA2P24043 3122 aaKnown RBP2.58□□□□□ -2
HMGB1P19-201ENST00000517578 ITPR1Q14643 2758 aa2.58□□□□□ -2
HMGB1P19-201ENST00000517578 ABCA2Q9BZC7 2435 aa2.58□□□□□ -2
HMGB1P19-201ENST00000517578 WDFY4Q6ZS81 3184 aa2.57□□□□□ -2
HMGB1P19-201ENST00000517578 TYMSOSQ8TAI1 123 aa2.57□□□□□ -2
HMGB1P19-201ENST00000517578 OBSCNQ5VST9 7968 aa2.57□□□□□ -2
HMGB1P19-201ENST00000517578 TENM2Q9NT68 2774 aa2.57□□□□□ -2
HMGB1P19-201ENST00000517578 CHD6Q8TD26 2715 aa2.56□□□□□ -2
HMGB1P19-201ENST00000517578 PRRC2CQ9Y520 2896 aaKnown RBP2.55□□□□□ -2
HMGB1P19-201ENST00000517578 TACC2O95359 2948 aa2.55□□□□□ -2
HMGB1P19-201ENST00000517578 HTTP42858 3142 aa2.54□□□□□ -2
HMGB1P19-201ENST00000517578 UBE2DNLQ8IWF7 75 aa2.54□□□□□ -2
HMGB1P19-201ENST00000517578 FLG2Q5D862 2391 aaPredicted RBP2.54□□□□□ -2
HMGB1P19-201ENST00000517578 APLNQ9ULZ1 77 aa2.53□□□□□ -2
HMGB1P19-201ENST00000517578 TLN1Q9Y490 2541 aaKnown RBP2.52□□□□□ -2.01
HMGB1P19-201ENST00000517578 INE1O15225 51 aa2.52□□□□□ -2.01
HMGB1P19-201ENST00000517578 KRTAP4-3Q9BYR4 195 aa2.52□□□□□ -2.01
HMGB1P19-201ENST00000517578 RIF1Q5UIP0 2472 aaKnown RBP2.52□□□□□ -2.01
HMGB1P19-201ENST00000517578 PP632Q6XCG6 107 aa2.51□□□□□ -2.01
HMGB1P19-201ENST00000517578 C10orf95Q9H7T3 257 aa2.51□□□□□ -2.01
HMGB1P19-201ENST00000517578 S4R3F8 94 aa2.51□□□□□ -2.01
HMGB1P19-201ENST00000517578 LAMA1P25391 3075 aa2.5□□□□□ -2.01
HMGB1P19-201ENST00000517578 USP34Q70CQ2 3546 aa2.5□□□□□ -2.01
HMGB1P19-201ENST00000517578 Q6ZRN7 208 aaPredicted RBP2.5□□□□□ -2.01
HMGB1P19-201ENST00000517578 DEFB123Q8N688 67 aa2.5□□□□□ -2.01
HMGB1P19-201ENST00000517578 TLN2Q9Y4G6 2542 aa2.5□□□□□ -2.01
HMGB1P19-201ENST00000517578 HIVEP2P31629 2446 aa2.49□□□□□ -2.01
HMGB1P19-201ENST00000517578 REV3LO60673 3130 aa2.49□□□□□ -2.01
HMGB1P19-201ENST00000517578 DMXL2Q8TDJ6 3036 aa2.49□□□□□ -2.01
HMGB1P19-201ENST00000517578 DCHS1Q96JQ0 3298 aa2.48□□□□□ -2.01
HMGB1P19-201ENST00000517578 ATRXP46100 2492 aa2.48□□□□□ -2.01
HMGB1P19-201ENST00000517578 FREM2Q5SZK8 3169 aa2.47□□□□□ -2.01
HMGB1P19-201ENST00000517578 SPACA4Q8TDM5 124 aa2.47□□□□□ -2.01
HMGB1P19-201ENST00000517578 FN1P02751 2386 aaKnown RBP2.47□□□□□ -2.01
HMGB1P19-201ENST00000517578 ASH1LQ9NR48 2969 aaKnown RBP2.47□□□□□ -2.01
HMGB1P19-201ENST00000517578 SONP18583 2426 aaKnown RBP2.47□□□□□ -2.01
HMGB1P19-201ENST00000517578 F8P00451 2351 aa2.46□□□□□ -2.01
HMGB1P19-201ENST00000517578 A0A0D9SG42 100 aa2.46□□□□□ -2.02
HMGB1P19-201ENST00000517578 M0QZ58 72 aa2.46□□□□□ -2.02
HMGB1P19-201ENST00000517578 SPTBN5Q9NRC6 3674 aaKnown RBP2.46□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms