RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 Q5VV11 94 aa5.17□□□□□ -1.58
LIMCH1-219ENST00000514096 COX8CQ7Z4L0 72 aa5.17□□□□□ -1.58
LIMCH1-219ENST00000514096 KRTAP4-5Q9BYR2 181 aa5.17□□□□□ -1.58
LIMCH1-219ENST00000514096 RYR1P21817 5038 aa5.16□□□□□ -1.58
LIMCH1-219ENST00000514096 DNAH11Q96DT5 4516 aa5.16□□□□□ -1.58
LIMCH1-219ENST00000514096 MED14OSP0DP75 135 aa5.15□□□□□ -1.58
LIMCH1-219ENST00000514096 PHF5AQ7RTV0 110 aaKnown RBP5.15□□□□□ -1.58
LIMCH1-219ENST00000514096 DYNC2H1Q8NCM8 4307 aaKnown RBP5.15□□□□□ -1.58
LIMCH1-219ENST00000514096 BIRC6Q9NR09 4857 aa5.15□□□□□ -1.58
LIMCH1-219ENST00000514096 LIMD2Q9BT23 127 aa5.15□□□□□ -1.58
LIMCH1-219ENST00000514096 IGLV4-3A0A075B6K6 122 aa5.14□□□□□ -1.59
LIMCH1-219ENST00000514096 FAT1Q14517 4588 aa5.14□□□□□ -1.59
LIMCH1-219ENST00000514096 SPAG11AQ6PDA7 123 aa5.14□□□□□ -1.59
LIMCH1-219ENST00000514096 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.14□□□□□ -1.59
LIMCH1-219ENST00000514096 LITAFQ99732 161 aa5.14□□□□□ -1.59
LIMCH1-219ENST00000514096 Q8N814 137 aa5.14□□□□□ -1.59
LIMCH1-219ENST00000514096 TRBV7-4A0A0J9YYF1 115 aa5.13□□□□□ -1.59
LIMCH1-219ENST00000514096 DNAH6Q9C0G6 4158 aa5.13□□□□□ -1.59
LIMCH1-219ENST00000514096 DEFB116Q30KQ4 102 aa5.13□□□□□ -1.59
LIMCH1-219ENST00000514096 Q6ZRN7 208 aaPredicted RBP5.13□□□□□ -1.59
LIMCH1-219ENST00000514096 DNAH5Q8TE73 4624 aa5.13□□□□□ -1.59
LIMCH1-219ENST00000514096 A6NN06 94 aa5.13□□□□□ -1.59
LIMCH1-219ENST00000514096 MOBPQ13875 183 aa5.13□□□□□ -1.59
LIMCH1-219ENST00000514096 LINC00337Q8N6G1 96 aa5.13□□□□□ -1.59
LIMCH1-219ENST00000514096 CHCHD7Q9BUK0 85 aa5.13□□□□□ -1.59
LIMCH1-219ENST00000514096 TRBV10-3A0A0K0K1G6 114 aa5.12□□□□□ -1.59
LIMCH1-219ENST00000514096 C22orf24Q9Y442 160 aa5.12□□□□□ -1.59
LIMCH1-219ENST00000514096 LINC01546A6NGU7 62 aa5.11□□□□□ -1.59
LIMCH1-219ENST00000514096 CAMK2N2Q96S95 79 aa5.11□□□□□ -1.59
LIMCH1-219ENST00000514096 DYNC1H1Q14204 4646 aaKnown RBP5.11□□□□□ -1.59
LIMCH1-219ENST00000514096 LINC00959A0A1B0GUT2 108 aa5.11□□□□□ -1.59
LIMCH1-219ENST00000514096 H0Y9J4 135 aa5.11□□□□□ -1.59
LIMCH1-219ENST00000514096 SPAG11BQ08648 103 aa5.1□□□□□ -1.59
LIMCH1-219ENST00000514096 LINC00208Q96KT6 92 aa5.1□□□□□ -1.59
LIMCH1-219ENST00000514096 ALMS1Q8TCU4 4167 aa5.1□□□□□ -1.59
LIMCH1-219ENST00000514096 TRBV6-5A0A0K0K1A5 114 aa5.1□□□□□ -1.59
LIMCH1-219ENST00000514096 A0A1B0GVY2 172 aa5.1□□□□□ -1.59
LIMCH1-219ENST00000514096 PANO1I0J062 215 aa5.1□□□□□ -1.59
LIMCH1-219ENST00000514096 POLR2KP53803 58 aaKnown RBP5.1□□□□□ -1.59
LIMCH1-219ENST00000514096 PRR3P79522 188 aaKnown RBP5.1□□□□□ -1.59
LIMCH1-219ENST00000514096 CNFNQ9BYD5 112 aa5.09□□□□□ -1.59
LIMCH1-219ENST00000514096 LRP1BQ9NZR2 4599 aa5.09□□□□□ -1.59
LIMCH1-219ENST00000514096 XAGE1AQ9HD64 81 aa5.09□□□□□ -1.59
LIMCH1-219ENST00000514096 Q5VSD8 79 aa5.09□□□□□ -1.6
LIMCH1-219ENST00000514096 SMIM29Q86T20 159 aa5.09□□□□□ -1.6
LIMCH1-219ENST00000514096 CDC42SE2Q9NRR3 84 aa5.09□□□□□ -1.6
LIMCH1-219ENST00000514096 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.09□□□□□ -1.6
LIMCH1-219ENST00000514096 BCE1O60756 84 aa5.08□□□□□ -1.6
LIMCH1-219ENST00000514096 CSAG1Q6PB30 78 aa5.08□□□□□ -1.6
LIMCH1-219ENST00000514096 CDC42SE1Q9NRR8 79 aa5.08□□□□□ -1.6
LIMCH1-219ENST00000514096 CIRBP-AS1Q8TBR5 109 aa5.07□□□□□ -1.6
LIMCH1-219ENST00000514096 FAM229AH3BQW9 127 aa5.07□□□□□ -1.6
LIMCH1-219ENST00000514096 NDUFA1O15239 70 aa5.07□□□□□ -1.6
LIMCH1-219ENST00000514096 UNQ6190/PRO20217Q6UXQ8 127 aa5.07□□□□□ -1.6
LIMCH1-219ENST00000514096 LINC00528Q8N1L1 170 aa5.06□□□□□ -1.6
LIMCH1-219ENST00000514096 KRTAP17-1Q9BYP8 105 aa5.06□□□□□ -1.6
LIMCH1-219ENST00000514096 LOC101927531A0A1B0GV80 90 aa5.06□□□□□ -1.6
LIMCH1-219ENST00000514096 C10orf25Q5T742 122 aa5.06□□□□□ -1.6
LIMCH1-219ENST00000514096 PCLOQ9Y6V0 5065 aa5.05□□□□□ -1.6
LIMCH1-219ENST00000514096 WFDC13Q8IUB5 93 aa5.05□□□□□ -1.6
LIMCH1-219ENST00000514096 HERC2O95714 4834 aa5.05□□□□□ -1.6
LIMCH1-219ENST00000514096 IGHV6-1A0A0B4J1U7 121 aa5.05□□□□□ -1.6
LIMCH1-219ENST00000514096 Q6ZQY7 126 aa5.05□□□□□ -1.6
LIMCH1-219ENST00000514096 DEFB105AQ8NG35 78 aa5.05□□□□□ -1.6
LIMCH1-219ENST00000514096 APOBP04114 4563 aaKnown RBP5.05□□□□□ -1.6
LIMCH1-219ENST00000514096 Q8N9P0 234 aaPredicted RBP5.05□□□□□ -1.6
LIMCH1-219ENST00000514096 FAT2Q9NYQ8 4349 aa5.04□□□□□ -1.6
LIMCH1-219ENST00000514096 C15orf56Q8N910 161 aa5.04□□□□□ -1.6
LIMCH1-219ENST00000514096 CYP4F30PQ9H0H9 118 aa5.04□□□□□ -1.6
LIMCH1-219ENST00000514096 A0A096LNI7 61 aa5.04□□□□□ -1.6
LIMCH1-219ENST00000514096 MYCBP2O75592 4640 aa5.04□□□□□ -1.6
LIMCH1-219ENST00000514096 A0A1B0GUV1 79 aa5.03□□□□□ -1.6
LIMCH1-219ENST00000514096 FAM168BA1KXE4 195 aa5.03□□□□□ -1.6
LIMCH1-219ENST00000514096 C14orf177Q52M58 125 aa5.03□□□□□ -1.6
LIMCH1-219ENST00000514096 PLA2G2DQ9UNK4 145 aa5.03□□□□□ -1.6
LIMCH1-219ENST00000514096 PRR34Q9NV39 138 aa5.03□□□□□ -1.6
LIMCH1-219ENST00000514096 ABCA13Q86UQ4 5058 aa5.03□□□□□ -1.6
LIMCH1-219ENST00000514096 SPINK7P58062 85 aa5.02□□□□□ -1.61
LIMCH1-219ENST00000514096 LINC00242Q5T6M2 205 aa5.02□□□□□ -1.61
LIMCH1-219ENST00000514096 DNAH17Q9UFH2 4485 aa5.01□□□□□ -1.61
LIMCH1-219ENST00000514096 RPL37AP8A6NKH3 93 aa5.01□□□□□ -1.61
LIMCH1-219ENST00000514096 PCOTHQ58A44 107 aa5.01□□□□□ -1.61
LIMCH1-219ENST00000514096 Q6ZQT0 140 aa5.01□□□□□ -1.61
LIMCH1-219ENST00000514096 PLA2G1BP04054 148 aaKnown RBP5.01□□□□□ -1.61
LIMCH1-219ENST00000514096 ST20-AS1Q8NBB2 130 aa5.01□□□□□ -1.61
LIMCH1-219ENST00000514096 Q75L30 129 aa5□□□□□ -1.61
LIMCH1-219ENST00000514096 NDUFB1O75438 58 aa5□□□□□ -1.61
LIMCH1-219ENST00000514096 IGKV2-28A0A075B6P5 120 aa5□□□□□ -1.61
LIMCH1-219ENST00000514096 IGKV2D-28P01615 120 aa5□□□□□ -1.61
LIMCH1-219ENST00000514096 KIAA0087Q14695 138 aa5□□□□□ -1.61
LIMCH1-219ENST00000514096 LINC00575Q6W349 94 aa5□□□□□ -1.61
LIMCH1-219ENST00000514096 C9orf163Q8N9P6 203 aa5□□□□□ -1.61
LIMCH1-219ENST00000514096 PKD1P98161 4303 aa4.99□□□□□ -1.61
LIMCH1-219ENST00000514096 ETDCA0A1B0GVM5 59 aa4.99□□□□□ -1.61
LIMCH1-219ENST00000514096 HECTD4Q9Y4D8 3996 aa4.99□□□□□ -1.61
LIMCH1-219ENST00000514096 RPL37AP61513 92 aaKnown RBP4.98□□□□□ -1.61
LIMCH1-219ENST00000514096 KRTAP26-1Q6PEX3 210 aa4.98□□□□□ -1.61
LIMCH1-219ENST00000514096 Q8N1X5 172 aa4.98□□□□□ -1.61
LIMCH1-219ENST00000514096 MIR22HGQ0VDD5 57 aa4.98□□□□□ -1.61
LIMCH1-219ENST00000514096 OCR1Q9BZK8 76 aa4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 150.2 ms