RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 TEX14Q8IWB6 1497 aa-0.44□□□□□ -2.48
HMGB1P28-201ENST00000507778 TEX15Q9BXT5 2789 aa-0.44□□□□□ -2.48
HMGB1P28-201ENST00000507778 DNAH17Q9UFH2 4485 aa-0.44□□□□□ -2.48
HMGB1P28-201ENST00000507778 CEP290O15078 2479 aa-0.44□□□□□ -2.48
HMGB1P28-201ENST00000507778 LRRIQ1Q96JM4 1722 aa-0.44□□□□□ -2.48
HMGB1P28-201ENST00000507778 A0A1B0GUL6 1792 aa-0.45□□□□□ -2.48
HMGB1P28-201ENST00000507778 MAP3K4Q9Y6R4 1608 aa-0.45□□□□□ -2.48
HMGB1P28-201ENST00000507778 MTORP42345 2549 aa-0.45□□□□□ -2.48
HMGB1P28-201ENST00000507778 MGAM2Q2M2H8 2515 aa-0.45□□□□□ -2.48
HMGB1P28-201ENST00000507778 FANCAO15360 1455 aa-0.45□□□□□ -2.48
HMGB1P28-201ENST00000507778 IQCF6A8MYZ5 107 aa-0.45□□□□□ -2.48
HMGB1P28-201ENST00000507778 D6R8Y8 96 aa-0.45□□□□□ -2.48
HMGB1P28-201ENST00000507778 H0YAA0 97 aa-0.45□□□□□ -2.48
HMGB1P28-201ENST00000507778 FAUP35544 74 aaKnown RBP-0.45□□□□□ -2.48
HMGB1P28-201ENST00000507778 KRTDAPP60985 99 aa-0.45□□□□□ -2.48
HMGB1P28-201ENST00000507778 MUSTN1Q8IVN3 82 aa-0.45□□□□□ -2.48
HMGB1P28-201ENST00000507778 TRGV9Q99603 122 aa-0.45□□□□□ -2.48
HMGB1P28-201ENST00000507778 C2orf88Q9BSF0 95 aa-0.45□□□□□ -2.48
HMGB1P28-201ENST00000507778 UBE2D4Q9Y2X8 147 aa-0.45□□□□□ -2.48
HMGB1P28-201ENST00000507778 FAM186AA6NE01 2351 aa-0.45□□□□□ -2.48
HMGB1P28-201ENST00000507778 SPTBN5Q9NRC6 3674 aaKnown RBP-0.45□□□□□ -2.48
HMGB1P28-201ENST00000507778 MAGI3Q5TCQ9 1506 aa-0.45□□□□□ -2.48
HMGB1P28-201ENST00000507778 C5orf42Q9H799 3197 aa-0.45□□□□□ -2.48
HMGB1P28-201ENST00000507778 RNF17Q9BXT8 1623 aaKnown RBP-0.46□□□□□ -2.48
HMGB1P28-201ENST00000507778 CNTLNQ9NXG0 1405 aa-0.46□□□□□ -2.48
HMGB1P28-201ENST00000507778 NHSQ6T4R5 1651 aa-0.46□□□□□ -2.48
HMGB1P28-201ENST00000507778 CDC42BPAQ5VT25 1732 aa-0.46□□□□□ -2.48
HMGB1P28-201ENST00000507778 NBEAL2Q6ZNJ1 2754 aa-0.46□□□□□ -2.48
HMGB1P28-201ENST00000507778 NEXMIFQ5QGS0 1516 aa-0.46□□□□□ -2.48
HMGB1P28-201ENST00000507778 UQCRHLA0A096LP55 91 aa-0.46□□□□□ -2.48
HMGB1P28-201ENST00000507778 ATOX1O00244 68 aa-0.46□□□□□ -2.48
HMGB1P28-201ENST00000507778 COL5A1-AS1Q5SY13 56 aa-0.46□□□□□ -2.48
HMGB1P28-201ENST00000507778 WFDC9Q8NEX5 89 aa-0.46□□□□□ -2.48
HMGB1P28-201ENST00000507778 GAFA1Q96PS6 74 aa-0.46□□□□□ -2.48
HMGB1P28-201ENST00000507778 DIP2BQ9P265 1576 aa-0.46□□□□□ -2.48
HMGB1P28-201ENST00000507778 DSPP15924 2871 aaKnown RBP-0.47□□□□□ -2.48
HMGB1P28-201ENST00000507778 MYO5CQ9NQX4 1742 aa-0.47□□□□□ -2.48
HMGB1P28-201ENST00000507778 ATP10BO94823 1461 aa-0.47□□□□□ -2.48
HMGB1P28-201ENST00000507778 NCOA2Q15596 1464 aa-0.47□□□□□ -2.48
HMGB1P28-201ENST00000507778 EPRSP07814 1512 aaKnown RBP-0.47□□□□□ -2.48
HMGB1P28-201ENST00000507778 DYNC2H1Q8NCM8 4307 aaKnown RBP-0.47□□□□□ -2.48
HMGB1P28-201ENST00000507778 C9orf92A6NGG3 77 aa-0.47□□□□□ -2.48
HMGB1P28-201ENST00000507778 MPC2O95563 127 aa-0.47□□□□□ -2.48
HMGB1P28-201ENST00000507778 ACYP1P07311 99 aa-0.47□□□□□ -2.48
HMGB1P28-201ENST00000507778 LINC00158P58513 81 aa-0.47□□□□□ -2.48
HMGB1P28-201ENST00000507778 DEFB1P60022 68 aa-0.47□□□□□ -2.48
HMGB1P28-201ENST00000507778 KRTAP19-5Q3LI72 72 aa-0.47□□□□□ -2.48
HMGB1P28-201ENST00000507778 ZNF720Q7Z2F6 126 aa-0.47□□□□□ -2.48
HMGB1P28-201ENST00000507778 SERP2Q8N6R1 65 aa-0.47□□□□□ -2.48
HMGB1P28-201ENST00000507778 PLIN4Q96Q06 1357 aa-0.47□□□□□ -2.49
HMGB1P28-201ENST00000507778 UTP20O75691 2785 aaKnown RBP-0.47□□□□□ -2.49
HMGB1P28-201ENST00000507778 RIF1Q5UIP0 2472 aaKnown RBP-0.47□□□□□ -2.49
HMGB1P28-201ENST00000507778 CEP162Q5TB80 1403 aa-0.47□□□□□ -2.49
HMGB1P28-201ENST00000507778 NBEAQ8NFP9 2946 aa-0.48□□□□□ -2.49
HMGB1P28-201ENST00000507778 USP9XQ93008 2570 aaPredicted RBP-0.48□□□□□ -2.49
HMGB1P28-201ENST00000507778 ABCC10Q5T3U5 1492 aa-0.48□□□□□ -2.49
HMGB1P28-201ENST00000507778 DNAH10Q8IVF4 4471 aa-0.48□□□□□ -2.49
HMGB1P28-201ENST00000507778 KIAA0586Q9BVV6 1533 aa-0.48□□□□□ -2.49
HMGB1P28-201ENST00000507778 EIF2AK4Q9P2K8 1649 aaKnown RBP-0.48□□□□□ -2.49
HMGB1P28-201ENST00000507778 TLN2Q9Y4G6 2542 aa-0.48□□□□□ -2.49
HMGB1P28-201ENST00000507778 TRAV21A0A0B4J279 112 aa-0.48□□□□□ -2.49
HMGB1P28-201ENST00000507778 C20orf202A1L168 122 aa-0.48□□□□□ -2.49
HMGB1P28-201ENST00000507778 ATP6V1G2-DDX39BF2Z307 99 aa-0.48□□□□□ -2.49
HMGB1P28-201ENST00000507778 H3BQ15 152 aa-0.48□□□□□ -2.49
HMGB1P28-201ENST00000507778 NDUFC1O43677 76 aa-0.48□□□□□ -2.49
HMGB1P28-201ENST00000507778 IAPPP10997 89 aa-0.48□□□□□ -2.49
HMGB1P28-201ENST00000507778 RPL38P63173 70 aaKnown RBP-0.48□□□□□ -2.49
HMGB1P28-201ENST00000507778 PRLHP81277 87 aa-0.48□□□□□ -2.49
HMGB1P28-201ENST00000507778 MRPS10P82664 201 aaKnown RBP-0.48□□□□□ -2.49
HMGB1P28-201ENST00000507778 NMSQ5H8A3 153 aa-0.48□□□□□ -2.49
HMGB1P28-201ENST00000507778 NCMAPQ5T1S8 102 aa-0.48□□□□□ -2.49
HMGB1P28-201ENST00000507778 PRO3102Q9H379 93 aa-0.48□□□□□ -2.49
HMGB1P28-201ENST00000507778 CELSR3Q9NYQ7 3312 aa-0.49□□□□□ -2.49
HMGB1P28-201ENST00000507778 DNAH5Q8TE73 4624 aa-0.49□□□□□ -2.49
HMGB1P28-201ENST00000507778 A0A1B0GUT8 65 aa-0.49□□□□□ -2.49
HMGB1P28-201ENST00000507778 K7EP34 96 aa-0.49□□□□□ -2.49
HMGB1P28-201ENST00000507778 DEFB130BP0DP73 79 aa-0.49□□□□□ -2.49
HMGB1P28-201ENST00000507778 DEFB130AP0DP74 79 aa-0.49□□□□□ -2.49
HMGB1P28-201ENST00000507778 MT1HP80294 61 aa-0.49□□□□□ -2.49
HMGB1P28-201ENST00000507778 C14orf144Q96I85 54 aa-0.49□□□□□ -2.49
HMGB1P28-201ENST00000507778 C20orf78Q9BR46 151 aa-0.49□□□□□ -2.49
HMGB1P28-201ENST00000507778 HMGN2P05204 90 aaKnown RBP-0.5□□□□□ -2.49
HMGB1P28-201ENST00000507778 PLGLAQ15195 96 aa-0.5□□□□□ -2.49
HMGB1P28-201ENST00000507778 ALKAL2Q6UX46 152 aa-0.5□□□□□ -2.49
HMGB1P28-201ENST00000507778 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-0.5□□□□□ -2.49
HMGB1P28-201ENST00000507778 EYSQ5T1H1 3165 aa-0.5□□□□□ -2.49
HMGB1P28-201ENST00000507778 MROH1Q8NDA8 1641 aa-0.5□□□□□ -2.49
HMGB1P28-201ENST00000507778 C3P01024 1663 aa-0.5□□□□□ -2.49
HMGB1P28-201ENST00000507778 FRYQ5TBA9 3013 aa-0.51□□□□□ -2.49
HMGB1P28-201ENST00000507778 CSMD1Q96PZ7 3565 aa-0.51□□□□□ -2.49
HMGB1P28-201ENST00000507778 URB2Q14146 1524 aaKnown RBP-0.51□□□□□ -2.49
HMGB1P28-201ENST00000507778 PEA15Q15121 130 aa-0.51□□□□□ -2.49
HMGB1P28-201ENST00000507778 NCBP2-AS2Q69YL0 99 aa-0.51□□□□□ -2.49
HMGB1P28-201ENST00000507778 MGAQ8IWI9 3026 aa-0.51□□□□□ -2.49
HMGB1P28-201ENST00000507778 THOC2Q8NI27 1593 aaKnown RBP-0.51□□□□□ -2.49
HMGB1P28-201ENST00000507778 FAM208AQ9UK61 1670 aaKnown RBP-0.52□□□□□ -2.49
HMGB1P28-201ENST00000507778 ABCC3O15438 1527 aa-0.52□□□□□ -2.49
HMGB1P28-201ENST00000507778 ERVK-7P63135 1459 aa-0.52□□□□□ -2.49
HMGB1P28-201ENST00000507778 LCE6AA0A183 80 aa-0.52□□□□□ -2.49
HMGB1P28-201ENST00000507778 NDUFA4O00483 81 aa-0.52□□□□□ -2.49
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms