RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 MIR7-3HGQ8N6C7 128 aa5.21□□□□□ -1.58
SCN1A-207ENST00000507401 CYSTM1Q9H1C7 97 aa5.21□□□□□ -1.58
SCN1A-207ENST00000507401 IGKV2-28A0A075B6P5 120 aa5.2□□□□□ -1.58
SCN1A-207ENST00000507401 A0A087WVE0 104 aa5.2□□□□□ -1.58
SCN1A-207ENST00000507401 KRTAP23-1A1A580 65 aa5.2□□□□□ -1.58
SCN1A-207ENST00000507401 UBE2L6O14933 153 aa5.2□□□□□ -1.58
SCN1A-207ENST00000507401 IGKV2D-28P01615 120 aa5.2□□□□□ -1.58
SCN1A-207ENST00000507401 SEC61GP60059 68 aa5.2□□□□□ -1.58
SCN1A-207ENST00000507401 REG3AQ06141 175 aa5.2□□□□□ -1.58
SCN1A-207ENST00000507401 KRTAP26-1Q6PEX3 210 aa5.2□□□□□ -1.58
SCN1A-207ENST00000507401 TRAV23DV6A0A075B6W5 121 aa5.19□□□□□ -1.58
SCN1A-207ENST00000507401 A0A1B0GW54 56 aa5.19□□□□□ -1.58
SCN1A-207ENST00000507401 NCR3O14931 201 aa5.19□□□□□ -1.58
SCN1A-207ENST00000507401 LINC00158P58513 81 aa5.19□□□□□ -1.58
SCN1A-207ENST00000507401 RBM3P98179 157 aaKnown RBP5.19□□□□□ -1.58
SCN1A-207ENST00000507401 A0A087WZ39 114 aa5.18□□□□□ -1.58
SCN1A-207ENST00000507401 TRBV7-6A0A0J9YX20 115 aa5.18□□□□□ -1.58
SCN1A-207ENST00000507401 HAMPP81172 84 aa5.18□□□□□ -1.58
SCN1A-207ENST00000507401 COX6A2Q02221 97 aa5.18□□□□□ -1.58
SCN1A-207ENST00000507401 SCXQ7RTU7 201 aa5.18□□□□□ -1.58
SCN1A-207ENST00000507401 C9orf163Q8N9P6 203 aa5.18□□□□□ -1.58
SCN1A-207ENST00000507401 DMBT1Q9UGM3 2413 aaPredicted RBP5.17□□□□□ -1.58
SCN1A-207ENST00000507401 IGLV4-60A0A075B6I1 120 aa5.17□□□□□ -1.58
SCN1A-207ENST00000507401 RNASE13Q5GAN3 156 aaKnown RBP5.17□□□□□ -1.58
SCN1A-207ENST00000507401 CIRBP-AS1Q8TBR5 109 aa5.17□□□□□ -1.58
SCN1A-207ENST00000507401 HERC1Q15751 4861 aa5.17□□□□□ -1.58
SCN1A-207ENST00000507401 CNBPP62633 177 aaKnown RBP5.16□□□□□ -1.58
SCN1A-207ENST00000507401 SS18Q15532 418 aa5.16□□□□□ -1.58
SCN1A-207ENST00000507401 Q6ZQT0 140 aa5.16□□□□□ -1.58
SCN1A-207ENST00000507401 PRR15Q8IV56 129 aa5.16□□□□□ -1.58
SCN1A-207ENST00000507401 Q8IZM0 81 aa5.16□□□□□ -1.58
SCN1A-207ENST00000507401 DEFB104AQ8WTQ1 72 aa5.16□□□□□ -1.58
SCN1A-207ENST00000507401 MYCBP2O75592 4640 aa5.16□□□□□ -1.58
SCN1A-207ENST00000507401 IGLV10-54A0A075B6I4 117 aa5.15□□□□□ -1.59
SCN1A-207ENST00000507401 TRBV7-4A0A0J9YYF1 115 aa5.15□□□□□ -1.59
SCN1A-207ENST00000507401 F8WEM9 126 aa5.15□□□□□ -1.59
SCN1A-207ENST00000507401 LINC01547P58512 204 aaPredicted RBP5.15□□□□□ -1.59
SCN1A-207ENST00000507401 C6orf226Q5I0X4 101 aa5.15□□□□□ -1.59
SCN1A-207ENST00000507401 CLPSL2Q6UWE3 100 aa5.15□□□□□ -1.59
SCN1A-207ENST00000507401 FP248Q71RG6 208 aaPredicted RBP5.15□□□□□ -1.59
SCN1A-207ENST00000507401 FLG2Q5D862 2391 aaPredicted RBP5.15□□□□□ -1.59
SCN1A-207ENST00000507401 IGHV3OR16-9A0A0B4J2B5 98 aa5.14□□□□□ -1.59
SCN1A-207ENST00000507401 A0A0U1RRA0 63 aa5.14□□□□□ -1.59
SCN1A-207ENST00000507401 FAM19A1Q7Z5A9 133 aa5.14□□□□□ -1.59
SCN1A-207ENST00000507401 KRTAP29-1A8MX34 341 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-207ENST00000507401 KRTAP10-4P60372 401 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-207ENST00000507401 Q6ZRU5 148 aa5.13□□□□□ -1.59
SCN1A-207ENST00000507401 TMEM254Q8TBM7 123 aa5.13□□□□□ -1.59
SCN1A-207ENST00000507401 BRK1Q8WUW1 75 aa5.13□□□□□ -1.59
SCN1A-207ENST00000507401 LINC00575Q6W349 94 aa5.12□□□□□ -1.59
SCN1A-207ENST00000507401 Q6ZVQ6 151 aa5.12□□□□□ -1.59
SCN1A-207ENST00000507401 NREPQ16612 68 aa5.11□□□□□ -1.59
SCN1A-207ENST00000507401 Q1T7F1 81 aa5.11□□□□□ -1.59
SCN1A-207ENST00000507401 C9orf129Q5T035 196 aaKnown RBP5.11□□□□□ -1.59
SCN1A-207ENST00000507401 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-207ENST00000507401 CHCHD10Q8WYQ3 142 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-207ENST00000507401 PRYO14603 147 aa5.1□□□□□ -1.59
SCN1A-207ENST00000507401 C15orf56Q8N910 161 aa5.1□□□□□ -1.59
SCN1A-207ENST00000507401 TOMM7Q9P0U1 55 aa5.1□□□□□ -1.59
SCN1A-207ENST00000507401 PKIGQ9Y2B9 76 aa5.1□□□□□ -1.59
SCN1A-207ENST00000507401 GVQW2A0A096LPI5 108 aaPredicted RBP5.09□□□□□ -1.59
SCN1A-207ENST00000507401 IGKV3OR2-268A0A0C4DH90 116 aa5.09□□□□□ -1.59
SCN1A-207ENST00000507401 LINC00959A0A1B0GUT2 108 aa5.09□□□□□ -1.59
SCN1A-207ENST00000507401 PANO1I0J062 215 aa5.09□□□□□ -1.59
SCN1A-207ENST00000507401 BPY2O14599 106 aa5.09□□□□□ -1.59
SCN1A-207ENST00000507401 PMAIP1Q13794 54 aa5.09□□□□□ -1.59
SCN1A-207ENST00000507401 A0A0U1RQV1 116 aa5.08□□□□□ -1.6
SCN1A-207ENST00000507401 NDUFB1O75438 58 aa5.08□□□□□ -1.6
SCN1A-207ENST00000507401 RPL37AP61513 92 aaKnown RBP5.08□□□□□ -1.6
SCN1A-207ENST00000507401 CD164Q04900 197 aa5.08□□□□□ -1.6
SCN1A-207ENST00000507401 CD164L2Q6UWJ8 174 aa5.08□□□□□ -1.6
SCN1A-207ENST00000507401 COX7BP24311 80 aa5.07□□□□□ -1.6
SCN1A-207ENST00000507401 KRTAP15-1Q3LI76 137 aa5.07□□□□□ -1.6
SCN1A-207ENST00000507401 SPACA4Q8TDM5 124 aa5.07□□□□□ -1.6
SCN1A-207ENST00000507401 PLAC8Q9NZF1 115 aa5.07□□□□□ -1.6
SCN1A-207ENST00000507401 LRP1Q07954 4544 aaKnown RBP5.06□□□□□ -1.6
SCN1A-207ENST00000507401 HIGD2BQ4VC39 106 aa5.06□□□□□ -1.6
SCN1A-207ENST00000507401 LINC00474Q9P2X8 69 aa5.06□□□□□ -1.6
SCN1A-207ENST00000507401 SNURFQ9Y675 71 aa5.06□□□□□ -1.6
SCN1A-207ENST00000507401 IGLV6-57P01721 117 aa5.05□□□□□ -1.6
SCN1A-207ENST00000507401 C6orf99Q4VX62 202 aa5.05□□□□□ -1.6
SCN1A-207ENST00000507401 SERTAD4-AS1Q5TG53 156 aa5.05□□□□□ -1.6
SCN1A-207ENST00000507401 OCR1Q9BZK8 76 aa5.05□□□□□ -1.6
SCN1A-207ENST00000507401 FAT3Q8TDW7 4589 aa5.04□□□□□ -1.6
SCN1A-207ENST00000507401 CHTF8P0CG12 524 aa5.04□□□□□ -1.6
SCN1A-207ENST00000507401 SYCNQ0VAF6 134 aa5.04□□□□□ -1.6
SCN1A-207ENST00000507401 C7orf33Q8WU49 177 aa5.04□□□□□ -1.6
SCN1A-207ENST00000507401 CYP4F30PQ9H0H9 118 aa5.04□□□□□ -1.6
SCN1A-207ENST00000507401 PKHD1L1Q86WI1 4243 aa5.03□□□□□ -1.6
SCN1A-207ENST00000507401 hDV103S1A0JD37 113 aa5.03□□□□□ -1.6
SCN1A-207ENST00000507401 DIRC1Q969H9 104 aa5.03□□□□□ -1.6
SCN1A-207ENST00000507401 A0A096LNI7 61 aa5.02□□□□□ -1.61
SCN1A-207ENST00000507401 IGKV2-24A0A0C4DH68 120 aa5.02□□□□□ -1.61
SCN1A-207ENST00000507401 ELOF1P60002 83 aaKnown RBP5.02□□□□□ -1.61
SCN1A-207ENST00000507401 UBE2BP63146 152 aa5.01□□□□□ -1.61
SCN1A-207ENST00000507401 H3BPC8 53 aa5□□□□□ -1.61
SCN1A-207ENST00000507401 Q6ZQY7 126 aa5□□□□□ -1.61
SCN1A-207ENST00000507401 CAMK2N2Q96S95 79 aa5□□□□□ -1.61
SCN1A-207ENST00000507401 NDUFS5O43920 106 aa4.99□□□□□ -1.61
SCN1A-207ENST00000507401 IGKV4-1P06312 121 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms