RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 Q6ZQY7 126 aa10.7□□□□□ -0.7
SQSTM1-209ENST00000504627 HIGD2AQ9BW72 106 aa10.7□□□□□ -0.7
SQSTM1-209ENST00000504627 ORMDL1Q9P0S3 153 aa10.7□□□□□ -0.7
SQSTM1-209ENST00000504627 GHRHP01286 108 aa10.69□□□□□ -0.7
SQSTM1-209ENST00000504627 OCIAD2Q56VL3 154 aa10.69□□□□□ -0.7
SQSTM1-209ENST00000504627 LPAP08519 4548 aa10.68□□□□□ -0.7
SQSTM1-209ENST00000504627 H3BQ85 93 aa10.68□□□□□ -0.7
SQSTM1-209ENST00000504627 H3BT86 120 aa10.68□□□□□ -0.7
SQSTM1-209ENST00000504627 PRO0461Q9UI25 63 aa10.68□□□□□ -0.7
SQSTM1-209ENST00000504627 ERC2-IT1O76042 136 aa10.67□□□□□ -0.7
SQSTM1-209ENST00000504627 PPDPFLQ8WWR9 84 aa10.66□□□□□ -0.7
SQSTM1-209ENST00000504627 F8W1H4 67 aa10.65□□□□□ -0.7
SQSTM1-209ENST00000504627 CRYGAP11844 174 aa10.65□□□□□ -0.7
SQSTM1-209ENST00000504627 PRR4Q16378 134 aa10.65□□□□□ -0.7
SQSTM1-209ENST00000504627 MTURNQ8N3F0 131 aa10.65□□□□□ -0.7
SQSTM1-209ENST00000504627 IGLV5-48A0A075B6I7 105 aa10.64□□□□□ -0.71
SQSTM1-209ENST00000504627 A0A087X002 238 aa10.63□□□□□ -0.71
SQSTM1-209ENST00000504627 ANKRD29Q8N6D5 301 aa10.63□□□□□ -0.71
SQSTM1-209ENST00000504627 TYMSOSQ8TAI1 123 aa10.63□□□□□ -0.71
SQSTM1-209ENST00000504627 ZNF706Q9Y5V0 76 aaPredicted RBP10.63□□□□□ -0.71
SQSTM1-209ENST00000504627 TMEM256-PLSCR3K7ERE1 68 aa10.62□□□□□ -0.71
SQSTM1-209ENST00000504627 BAALC-AS2P0C853 105 aa10.62□□□□□ -0.71
SQSTM1-209ENST00000504627 SMCPP49901 116 aaPredicted RBP10.61□□□□□ -0.71
SQSTM1-209ENST00000504627 LINC01547P58512 204 aaPredicted RBP10.61□□□□□ -0.71
SQSTM1-209ENST00000504627 ST20-AS1Q8NBB2 130 aa10.61□□□□□ -0.71
SQSTM1-209ENST00000504627 ANAPC11Q9NYG5 84 aa10.61□□□□□ -0.71
SQSTM1-209ENST00000504627 TEX49A0A1B0GTD5 131 aa10.58□□□□□ -0.72
SQSTM1-209ENST00000504627 SPRR1BP22528 89 aa10.58□□□□□ -0.72
SQSTM1-209ENST00000504627 Q8N377 158 aa10.58□□□□□ -0.72
SQSTM1-209ENST00000504627 SPRR4Q96PI1 79 aa10.58□□□□□ -0.72
SQSTM1-209ENST00000504627 DEFB105AQ8NG35 78 aa10.56□□□□□ -0.72
SQSTM1-209ENST00000504627 FAM229BQ4G0N7 80 aa10.55□□□□□ -0.72
SQSTM1-209ENST00000504627 LINC00483Q53H64 154 aa10.55□□□□□ -0.72
SQSTM1-209ENST00000504627 GAGE2AQ6NT46 116 aa10.54□□□□□ -0.72
SQSTM1-209ENST00000504627 KRTAP13-2Q52LG2 175 aa10.53□□□□□ -0.72
SQSTM1-209ENST00000504627 TEN1Q86WV5 123 aa10.53□□□□□ -0.72
SQSTM1-209ENST00000504627 NDUFV3P56181 108 aaKnown RBP10.51□□□□□ -0.73
SQSTM1-209ENST00000504627 LAMTOR3Q9UHA4 124 aa10.51□□□□□ -0.73
SQSTM1-209ENST00000504627 JMJD7-PLA2G4BH0Y9G9 81 aa10.5□□□□□ -0.73
SQSTM1-209ENST00000504627 ETDBQ3ZM63 59 aa10.5□□□□□ -0.73
SQSTM1-209ENST00000504627 LINC00304Q8N9R0 145 aa10.5□□□□□ -0.73
SQSTM1-209ENST00000504627 SMIM29Q86T20 159 aa10.49□□□□□ -0.73
SQSTM1-209ENST00000504627 OBSCN-AS1Q96MR7 158 aa10.49□□□□□ -0.73
SQSTM1-209ENST00000504627 F8WEM9 126 aa10.48□□□□□ -0.73
SQSTM1-209ENST00000504627 C3orf22Q8N5N4 141 aa10.47□□□□□ -0.73
SQSTM1-209ENST00000504627 IGLV8-61A0A075B6I0 122 aa10.44□□□□□ -0.74
SQSTM1-209ENST00000504627 RBM3P98179 157 aaKnown RBP10.44□□□□□ -0.74
SQSTM1-209ENST00000504627 RETNLBQ9BQ08 111 aa10.43□□□□□ -0.74
SQSTM1-209ENST00000504627 A0A1B0GV72 72 aa10.42□□□□□ -0.74
SQSTM1-209ENST00000504627 C21orf62-AS1Q17RA5 79 aa10.41□□□□□ -0.74
SQSTM1-209ENST00000504627 DSCR8Q96T75 97 aa10.41□□□□□ -0.74
SQSTM1-209ENST00000504627 MUC2Q02817 5179 aa10.4□□□□□ -0.74
SQSTM1-209ENST00000504627 LOC110117498A0A087WWA1 95 aa10.4□□□□□ -0.74
SQSTM1-209ENST00000504627 TRBV7-4A0A0J9YYF1 115 aa10.4□□□□□ -0.74
SQSTM1-209ENST00000504627 Q8NBF4 154 aa10.4□□□□□ -0.74
SQSTM1-209ENST00000504627 C14orf132Q9NPU4 83 aa10.4□□□□□ -0.74
SQSTM1-209ENST00000504627 PDE6GP18545 87 aa10.39□□□□□ -0.75
SQSTM1-209ENST00000504627 Q6JHZ5 121 aa10.39□□□□□ -0.75
SQSTM1-209ENST00000504627 C9orf153Q5TBE3 101 aa10.38□□□□□ -0.75
SQSTM1-209ENST00000504627 IGLV9-49A0A0B4J1Y8 123 aa10.37□□□□□ -0.75
SQSTM1-209ENST00000504627 MOBPQ13875 183 aa10.36□□□□□ -0.75
SQSTM1-209ENST00000504627 C4orf48Q5BLP8 95 aa10.36□□□□□ -0.75
SQSTM1-209ENST00000504627 SPAG11AQ6PDA7 123 aa10.35□□□□□ -0.75
SQSTM1-209ENST00000504627 Q6ZQT0 140 aa10.35□□□□□ -0.75
SQSTM1-209ENST00000504627 IGLV7-46A0A075B6I9 117 aa10.34□□□□□ -0.75
SQSTM1-209ENST00000504627 IGFL1Q6UW32 110 aa10.34□□□□□ -0.75
SQSTM1-209ENST00000504627 CDIP1Q9H305 208 aa10.33□□□□□ -0.76
SQSTM1-209ENST00000504627 J3QR89 54 aa10.32□□□□□ -0.76
SQSTM1-209ENST00000504627 A0A0U1RQV1 116 aa10.31□□□□□ -0.76
SQSTM1-209ENST00000504627 CCKP06307 115 aa10.31□□□□□ -0.76
SQSTM1-209ENST00000504627 SSBP3-AS1Q7Z2R9 100 aa10.31□□□□□ -0.76
SQSTM1-209ENST00000504627 TPRXLQ17RH7 258 aa10.3□□□□□ -0.76
SQSTM1-209ENST00000504627 FAM240AA0A1B0GVK7 77 aa10.28□□□□□ -0.76
SQSTM1-209ENST00000504627 Q6Q795 121 aa10.27□□□□□ -0.77
SQSTM1-209ENST00000504627 A0A1B0GW54 56 aa10.26□□□□□ -0.77
SQSTM1-209ENST00000504627 A0A1W2PNM2 257 aa10.26□□□□□ -0.77
SQSTM1-209ENST00000504627 K7ERU9 68 aa10.26□□□□□ -0.77
SQSTM1-209ENST00000504627 VPS25Q9BRG1 176 aa10.26□□□□□ -0.77
SQSTM1-209ENST00000504627 A0A0G2JQZ4 141 aa10.23□□□□□ -0.77
SQSTM1-209ENST00000504627 SPINK1P00995 79 aa10.23□□□□□ -0.77
SQSTM1-209ENST00000504627 ACYP1P07311 99 aa10.23□□□□□ -0.77
SQSTM1-209ENST00000504627 CD164Q04900 197 aa10.23□□□□□ -0.77
SQSTM1-209ENST00000504627 FP248Q71RG6 208 aaPredicted RBP10.23□□□□□ -0.77
SQSTM1-209ENST00000504627 MUC17Q685J3 4493 aa10.2□□□□□ -0.78
SQSTM1-209ENST00000504627 TRBV7-7A0A0K0K1E9 115 aa10.2□□□□□ -0.78
SQSTM1-209ENST00000504627 A0A087WSZ3 146 aa10.16□□□□□ -0.78
SQSTM1-209ENST00000504627 SS18L2Q9UHA2 77 aa10.15□□□□□ -0.78
SQSTM1-209ENST00000504627 HRCT1Q6UXD1 115 aa10.14□□□□□ -0.79
SQSTM1-209ENST00000504627 LINC00846Q9NV44 126 aa10.14□□□□□ -0.79
SQSTM1-209ENST00000504627 RPS29P62273 56 aaKnown RBP10.13□□□□□ -0.79
SQSTM1-209ENST00000504627 FAT4Q6V0I7 4981 aa10.13□□□□□ -0.79
SQSTM1-209ENST00000504627 UBL5Q9BZL1 73 aa10.12□□□□□ -0.79
SQSTM1-209ENST00000504627 KRTAP13-3Q3SY46 172 aa10.11□□□□□ -0.79
SQSTM1-209ENST00000504627 LIMD2Q9BT23 127 aa10.11□□□□□ -0.79
SQSTM1-209ENST00000504627 Q5XG85 94 aa10.1□□□□□ -0.79
SQSTM1-209ENST00000504627 Q6ZVQ6 151 aa10.08□□□□□ -0.8
SQSTM1-209ENST00000504627 NREPQ16612 68 aa10.07□□□□□ -0.8
SQSTM1-209ENST00000504627 ASB16-AS1Q495Z4 193 aa10.06□□□□□ -0.8
SQSTM1-209ENST00000504627 LINC00643Q86TS7 51 aa10.03□□□□□ -0.8
SQSTM1-209ENST00000504627 ATP5EP2Q5VTU8 51 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms