RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 LINC00337Q8N6G1 96 aa2.2□□□□□ -2.06
USP54-217ENST00000498213 TINCRA0A1B0GVN0 87 aa2.19□□□□□ -2.06
USP54-217ENST00000498213 TMEM223A0PJW6 202 aa2.19□□□□□ -2.06
USP54-217ENST00000498213 H3BRM9 83 aa2.19□□□□□ -2.06
USP54-217ENST00000498213 COX8AP10176 69 aa2.19□□□□□ -2.06
USP54-217ENST00000498213 PLNP26678 52 aa2.19□□□□□ -2.06
USP54-217ENST00000498213 NMUP48645 174 aa2.19□□□□□ -2.06
USP54-217ENST00000498213 UBE2AP49459 152 aa2.19□□□□□ -2.06
USP54-217ENST00000498213 BOD1L2Q8IYS8 172 aa2.19□□□□□ -2.06
USP54-217ENST00000498213 NKAPP1Q8N9T2 125 aa2.19□□□□□ -2.06
USP54-217ENST00000498213 PLEKHB2Q96CS7 222 aa2.19□□□□□ -2.06
USP54-217ENST00000498213 MIEN1Q9BRT3 115 aa2.19□□□□□ -2.06
USP54-217ENST00000498213 UQCR10Q9UDW1 63 aa2.19□□□□□ -2.06
USP54-217ENST00000498213 E9PLD3 99 aa2.18□□□□□ -2.06
USP54-217ENST00000498213 M0R143 59 aa2.18□□□□□ -2.06
USP54-217ENST00000498213 SPINK8P0C7L1 97 aa2.18□□□□□ -2.06
USP54-217ENST00000498213 TMEM170BQ5T4T1 132 aa2.18□□□□□ -2.06
USP54-217ENST00000498213 SSBP3-AS1Q7Z2R9 100 aa2.18□□□□□ -2.06
USP54-217ENST00000498213 MTURNQ8N3F0 131 aa2.18□□□□□ -2.06
USP54-217ENST00000498213 SNHG12Q9BXW3 62 aa2.18□□□□□ -2.06
USP54-217ENST00000498213 PPDPFQ9H3Y8 114 aa2.18□□□□□ -2.06
USP54-217ENST00000498213 CDKN2A-AS1Q9UH64 79 aa2.18□□□□□ -2.06
USP54-217ENST00000498213 DLEU1O43261 78 aa2.17□□□□□ -2.06
USP54-217ENST00000498213 SLC25A20O43772 301 aa2.17□□□□□ -2.06
USP54-217ENST00000498213 KRTAP2-3P0C7H8 128 aa2.17□□□□□ -2.06
USP54-217ENST00000498213 SLC25A34Q6PIV7 304 aa2.17□□□□□ -2.06
USP54-217ENST00000498213 C2orf82Q6UX34 121 aa2.17□□□□□ -2.06
USP54-217ENST00000498213 DAND5Q8N907 189 aa2.17□□□□□ -2.06
USP54-217ENST00000498213 KRTAP2-4Q9BYR9 128 aa2.17□□□□□ -2.06
USP54-217ENST00000498213 A0A0U1RRA0 63 aa2.16□□□□□ -2.06
USP54-217ENST00000498213 MYMXA0A1B0GTQ4 84 aa2.16□□□□□ -2.06
USP54-217ENST00000498213 A0A1B0GV72 72 aa2.16□□□□□ -2.06
USP54-217ENST00000498213 ZNF815PA8K554 130 aa2.16□□□□□ -2.06
USP54-217ENST00000498213 J3QQQ9 107 aa2.16□□□□□ -2.06
USP54-217ENST00000498213 K7ERU9 68 aa2.16□□□□□ -2.06
USP54-217ENST00000498213 LEPROTO15243 131 aa2.16□□□□□ -2.06
USP54-217ENST00000498213 HINT1P49773 126 aaPredicted RBP2.16□□□□□ -2.06
USP54-217ENST00000498213 LINC00483Q53H64 154 aa2.16□□□□□ -2.06
USP54-217ENST00000498213 BVES-AS1Q5T3Y7 98 aa2.16□□□□□ -2.06
USP54-217ENST00000498213 COX7B2Q8TF08 81 aa2.16□□□□□ -2.06
USP54-217ENST00000498213 TMEM126AQ9H061 195 aa2.16□□□□□ -2.06
USP54-217ENST00000498213 XAGE1AQ9HD64 81 aa2.16□□□□□ -2.06
USP54-217ENST00000498213 A0A0J9YXY3 114 aa2.15□□□□□ -2.07
USP54-217ENST00000498213 LGALS3P17931 250 aaKnown RBP2.15□□□□□ -2.07
USP54-217ENST00000498213 FXYD2P54710 66 aa2.15□□□□□ -2.07
USP54-217ENST00000498213 HERVK_113P61574 105 aa2.15□□□□□ -2.07
USP54-217ENST00000498213 BATFQ16520 125 aa2.15□□□□□ -2.07
USP54-217ENST00000498213 KRTAP13-2Q52LG2 175 aa2.15□□□□□ -2.07
USP54-217ENST00000498213 COL5A1-AS1Q5SY13 56 aa2.15□□□□□ -2.07
USP54-217ENST00000498213 ZNF625Q96I27 306 aaPredicted RBP2.15□□□□□ -2.07
USP54-217ENST00000498213 VPS25Q9BRG1 176 aa2.15□□□□□ -2.07
USP54-217ENST00000498213 KCNQ1DNQ9H478 68 aa2.15□□□□□ -2.07
USP54-217ENST00000498213 TOMM7Q9P0U1 55 aa2.15□□□□□ -2.07
USP54-217ENST00000498213 HIGD1BQ9P298 99 aa2.15□□□□□ -2.07
USP54-217ENST00000498213 A0A1B0GV90 55 aa2.14□□□□□ -2.07
USP54-217ENST00000498213 J3QR89 54 aa2.14□□□□□ -2.07
USP54-217ENST00000498213 K7ERJ3 54 aa2.14□□□□□ -2.07
USP54-217ENST00000498213 M0R378 163 aa2.14□□□□□ -2.07
USP54-217ENST00000498213 SPRR1AP35321 89 aa2.14□□□□□ -2.07
USP54-217ENST00000498213 HSD52Q0P140 79 aa2.14□□□□□ -2.07
USP54-217ENST00000498213 SOSTDC1Q6X4U4 206 aa2.14□□□□□ -2.07
USP54-217ENST00000498213 FAM19A1Q7Z5A9 133 aa2.14□□□□□ -2.07
USP54-217ENST00000498213 SPRR4Q96PI1 79 aa2.14□□□□□ -2.07
USP54-217ENST00000498213 LIMD2Q9BT23 127 aa2.14□□□□□ -2.07
USP54-217ENST00000498213 IGLV8-61A0A075B6I0 122 aa2.13□□□□□ -2.07
USP54-217ENST00000498213 LOC107984156A0A0G2JMH3 177 aa2.13□□□□□ -2.07
USP54-217ENST00000498213 TRBV10-2A0A0K0K1G8 114 aa2.13□□□□□ -2.07
USP54-217ENST00000498213 TAX1BP3O14907 124 aa2.13□□□□□ -2.07
USP54-217ENST00000498213 SCGB1A1P11684 91 aa2.13□□□□□ -2.07
USP54-217ENST00000498213 Q5XG85 94 aa2.13□□□□□ -2.07
USP54-217ENST00000498213 SCGB1D4Q6XE38 83 aa2.13□□□□□ -2.07
USP54-217ENST00000498213 ARL17AQ8IVW1 177 aa2.13□□□□□ -2.07
USP54-217ENST00000498213 CEND1Q8N111 149 aa2.13□□□□□ -2.07
USP54-217ENST00000498213 Q8NDZ9 215 aa2.13□□□□□ -2.07
USP54-217ENST00000498213 NAA38Q9BRA0 125 aaKnown RBP2.13□□□□□ -2.07
USP54-217ENST00000498213 SND1-IT1Q9HBX3 110 aa2.13□□□□□ -2.07
USP54-217ENST00000498213 SPANXB1Q9NS25 103 aaPredicted RBP2.13□□□□□ -2.07
USP54-217ENST00000498213 LINC00846Q9NV44 126 aa2.13□□□□□ -2.07
USP54-217ENST00000498213 ERG28Q9UKR5 140 aa2.13□□□□□ -2.07
USP54-217ENST00000498213 MDN1Q9NU22 5596 aa2.12□□□□□ -2.07
USP54-217ENST00000498213 A0A1B0GWB2 263 aa2.12□□□□□ -2.07
USP54-217ENST00000498213 TIMM17BO60830 172 aa2.12□□□□□ -2.07
USP54-217ENST00000498213 SMIM13P0DJ93 91 aa2.12□□□□□ -2.07
USP54-217ENST00000498213 NPC2P61916 151 aa2.12□□□□□ -2.07
USP54-217ENST00000498213 CD164Q04900 197 aa2.12□□□□□ -2.07
USP54-217ENST00000498213 TAL2Q16559 108 aa2.12□□□□□ -2.07
USP54-217ENST00000498213 MUSTN1Q8IVN3 82 aa2.12□□□□□ -2.07
USP54-217ENST00000498213 HIST1H4GQ99525 98 aa2.12□□□□□ -2.07
USP54-217ENST00000498213 SPANXDQ9BXN6 97 aa2.12□□□□□ -2.07
USP54-217ENST00000498213 NHP2Q9NX24 153 aaKnown RBP2.12□□□□□ -2.07
USP54-217ENST00000498213 SPANXCQ9NY87 97 aa2.12□□□□□ -2.07
USP54-217ENST00000498213 FLGP20930 4061 aaPredicted RBP2.11□□□□□ -2.07
USP54-217ENST00000498213 IGKV2-28A0A075B6P5 120 aa2.11□□□□□ -2.07
USP54-217ENST00000498213 ETDCA0A1B0GVM5 59 aa2.11□□□□□ -2.07
USP54-217ENST00000498213 IGKV2D-28P01615 120 aa2.11□□□□□ -2.07
USP54-217ENST00000498213 PRLHP81277 87 aa2.11□□□□□ -2.07
USP54-217ENST00000498213 MEIG1Q5JSS6 88 aa2.11□□□□□ -2.07
USP54-217ENST00000498213 GTF2H5Q6ZYL4 71 aa2.11□□□□□ -2.07
USP54-217ENST00000498213 MIR7-3HGQ8N6C7 128 aa2.11□□□□□ -2.07
USP54-217ENST00000498213 Q8N9L7 120 aa2.11□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 99.2 ms