RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 TDRG1Q3Y452 100 aa1.54□□□□□ -2.16
VPS13A-212ENST00000493341 ALKAL2Q6UX46 152 aa1.54□□□□□ -2.16
VPS13A-212ENST00000493341 TMEM167AQ8TBQ9 72 aa1.54□□□□□ -2.16
VPS13A-212ENST00000493341 V9GYV3 84 aa1.54□□□□□ -2.16
VPS13A-212ENST00000493341 DEFA5Q01523 94 aa1.53□□□□□ -2.16
VPS13A-212ENST00000493341 DEFB136Q30KP8 78 aa1.53□□□□□ -2.16
VPS13A-212ENST00000493341 HUWE1Q7Z6Z7 4374 aaKnown RBP1.53□□□□□ -2.16
VPS13A-212ENST00000493341 ALMS1Q8TCU4 4167 aa1.53□□□□□ -2.17
VPS13A-212ENST00000493341 DNAH6Q9C0G6 4158 aa1.53□□□□□ -2.17
VPS13A-212ENST00000493341 A0A087WTM6 91 aa1.52□□□□□ -2.17
VPS13A-212ENST00000493341 UBE2L5PA0A1B0GUS4 154 aa1.52□□□□□ -2.17
VPS13A-212ENST00000493341 IGLC7A0M8Q6 106 aa1.52□□□□□ -2.17
VPS13A-212ENST00000493341 UBE2L3P68036 154 aaKnown RBP1.52□□□□□ -2.17
VPS13A-212ENST00000493341 PLGLAQ15195 96 aa1.52□□□□□ -2.17
VPS13A-212ENST00000493341 FXYD6Q9H0Q3 95 aa1.52□□□□□ -2.17
VPS13A-212ENST00000493341 DNAH1Q9P2D7 4330 aa1.52□□□□□ -2.17
VPS13A-212ENST00000493341 NMBP08949 121 aa1.52□□□□□ -2.17
VPS13A-212ENST00000493341 PEA15Q15121 130 aa1.52□□□□□ -2.17
VPS13A-212ENST00000493341 DEFB114Q30KQ6 69 aa1.52□□□□□ -2.17
VPS13A-212ENST00000493341 S100A16Q96FQ6 103 aaKnown RBP1.52□□□□□ -2.17
VPS13A-212ENST00000493341 NDUFA4L2Q9NRX3 87 aa1.52□□□□□ -2.17
VPS13A-212ENST00000493341 CSMD3Q7Z407 3707 aa1.51□□□□□ -2.17
VPS13A-212ENST00000493341 SSSCA1O60232 199 aa1.51□□□□□ -2.17
VPS13A-212ENST00000493341 IGLC1P0CG04 106 aa1.51□□□□□ -2.17
VPS13A-212ENST00000493341 FAM103A1Q9BTL3 118 aaKnown RBP1.51□□□□□ -2.17
VPS13A-212ENST00000493341 DPH3P1Q9H4G8 78 aa1.51□□□□□ -2.17
VPS13A-212ENST00000493341 NPVFQ9HCQ7 196 aa1.51□□□□□ -2.17
VPS13A-212ENST00000493341 TENM3Q9P273 2699 aa1.51□□□□□ -2.17
VPS13A-212ENST00000493341 I3L2K1 104 aa1.5□□□□□ -2.17
VPS13A-212ENST00000493341 K7EIM0 57 aa1.5□□□□□ -2.17
VPS13A-212ENST00000493341 NDUFA4O00483 81 aa1.5□□□□□ -2.17
VPS13A-212ENST00000493341 CFDP00746 253 aaPredicted RBP1.5□□□□□ -2.17
VPS13A-212ENST00000493341 MT-ATP8P03928 68 aa1.5□□□□□ -2.17
VPS13A-212ENST00000493341 PRCDQ00LT1 54 aa1.5□□□□□ -2.17
VPS13A-212ENST00000493341 WT1-ASQ06250 92 aa1.5□□□□□ -2.17
VPS13A-212ENST00000493341 DEFB121Q5J5C9 76 aa1.5□□□□□ -2.17
VPS13A-212ENST00000493341 SMIM4Q8WVI0 70 aa1.5□□□□□ -2.17
VPS13A-212ENST00000493341 S100ZQ8WXG8 99 aa1.5□□□□□ -2.17
VPS13A-212ENST00000493341 CACFD1Q9UGQ2 172 aa1.5□□□□□ -2.17
VPS13A-212ENST00000493341 STARD9Q9P2P6 4700 aa1.5□□□□□ -2.17
VPS13A-212ENST00000493341 STAB2Q8WWQ8 2551 aa1.5□□□□□ -2.17
VPS13A-212ENST00000493341 PRH1P02810 166 aa1.5□□□□□ -2.17
VPS13A-212ENST00000493341 SPINK13Q1W4C9 94 aa1.5□□□□□ -2.17
VPS13A-212ENST00000493341 KMT2CQ8NEZ4 4911 aaKnown RBP1.5□□□□□ -2.17
VPS13A-212ENST00000493341 RYR2Q92736 4967 aa1.49□□□□□ -2.17
VPS13A-212ENST00000493341 LCE6AA0A183 80 aa1.49□□□□□ -2.17
VPS13A-212ENST00000493341 CRYM-AS1A6NIL9 109 aa1.49□□□□□ -2.17
VPS13A-212ENST00000493341 H3BQ15 152 aa1.49□□□□□ -2.17
VPS13A-212ENST00000493341 PLECQ15149 4684 aaKnown RBP1.49□□□□□ -2.17
VPS13A-212ENST00000493341 MACF1Q9UPN3 7388 aaKnown RBP1.49□□□□□ -2.17
VPS13A-212ENST00000493341 SACSQ9NZJ4 4579 aa1.49□□□□□ -2.17
VPS13A-212ENST00000493341 APELAP0DMC3 54 aa1.49□□□□□ -2.17
VPS13A-212ENST00000493341 SNCAP37840 140 aa1.49□□□□□ -2.17
VPS13A-212ENST00000493341 ATP5EP56381 51 aaPredicted RBP1.49□□□□□ -2.17
VPS13A-212ENST00000493341 NMSQ5H8A3 153 aa1.49□□□□□ -2.17
VPS13A-212ENST00000493341 VAMP8Q9BV40 100 aa1.49□□□□□ -2.17
VPS13A-212ENST00000493341 LINC00474Q9P2X8 69 aa1.49□□□□□ -2.17
VPS13A-212ENST00000493341 RYR3Q15413 4870 aa1.48□□□□□ -2.17
VPS13A-212ENST00000493341 NBEAL2Q6ZNJ1 2754 aa1.48□□□□□ -2.17
VPS13A-212ENST00000493341 A8MTW9 85 aa1.48□□□□□ -2.17
VPS13A-212ENST00000493341 CYP4F30PQ9H0H9 118 aa1.48□□□□□ -2.17
VPS13A-212ENST00000493341 SMCO4Q9NRQ5 59 aa1.48□□□□□ -2.17
VPS13A-212ENST00000493341 V9GYH0 126 aa1.48□□□□□ -2.17
VPS13A-212ENST00000493341 FRAS1Q86XX4 4008 aa1.48□□□□□ -2.17
VPS13A-212ENST00000493341 TENM2Q9NT68 2774 aa1.48□□□□□ -2.17
VPS13A-212ENST00000493341 VPS13DQ5THJ4 4388 aa1.47□□□□□ -2.17
VPS13A-212ENST00000493341 NAP1L6A6NFF2 107 aa1.47□□□□□ -2.17
VPS13A-212ENST00000493341 PPP1R17O96001 155 aa1.47□□□□□ -2.17
VPS13A-212ENST00000493341 RHPN1-AS1Q9BWJ2 59 aa1.47□□□□□ -2.17
VPS13A-212ENST00000493341 DNAH17Q9UFH2 4485 aa1.47□□□□□ -2.17
VPS13A-212ENST00000493341 HECTD4Q9Y4D8 3996 aa1.47□□□□□ -2.17
VPS13A-212ENST00000493341 SFT2D2O95562 160 aa1.47□□□□□ -2.17
VPS13A-212ENST00000493341 FAUP35544 74 aaKnown RBP1.47□□□□□ -2.17
VPS13A-212ENST00000493341 TRGV9Q99603 122 aa1.47□□□□□ -2.17
VPS13A-212ENST00000493341 K7EP34 96 aa1.46□□□□□ -2.18
VPS13A-212ENST00000493341 RPL37P61927 97 aaKnown RBP1.46□□□□□ -2.18
VPS13A-212ENST00000493341 TOMM5Q8N4H5 51 aa1.46□□□□□ -2.18
VPS13A-212ENST00000493341 Q96NJ1 140 aa1.46□□□□□ -2.18
VPS13A-212ENST00000493341 C20orf78Q9BR46 151 aa1.46□□□□□ -2.18
VPS13A-212ENST00000493341 DNAH10Q8IVF4 4471 aa1.46□□□□□ -2.18
VPS13A-212ENST00000493341 HYDINQ4G0P3 5121 aa1.46□□□□□ -2.18
VPS13A-212ENST00000493341 CEBPZOSA8MTT3 80 aa1.45□□□□□ -2.18
VPS13A-212ENST00000493341 SPINK9Q5DT21 86 aa1.45□□□□□ -2.18
VPS13A-212ENST00000493341 RABAC1Q9UI14 185 aa1.45□□□□□ -2.18
VPS13A-212ENST00000493341 BIRC6Q9NR09 4857 aa1.45□□□□□ -2.18
VPS13A-212ENST00000493341 F2Z2F3 143 aa1.45□□□□□ -2.18
VPS13A-212ENST00000493341 ACYP2P14621 99 aa1.45□□□□□ -2.18
VPS13A-212ENST00000493341 DEFB131AP59861 70 aa1.45□□□□□ -2.18
VPS13A-212ENST00000493341 Q0VG73 95 aa1.45□□□□□ -2.18
VPS13A-212ENST00000493341 DEFB135Q30KP9 77 aa1.45□□□□□ -2.18
VPS13A-212ENST00000493341 UQCR10Q9UDW1 63 aa1.45□□□□□ -2.18
VPS13A-212ENST00000493341 KMT2AQ03164 3969 aa1.45□□□□□ -2.18
VPS13A-212ENST00000493341 TRGV1A0A0A0MS02 117 aa1.44□□□□□ -2.18
VPS13A-212ENST00000493341 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.44□□□□□ -2.18
VPS13A-212ENST00000493341 APLNQ9ULZ1 77 aa1.44□□□□□ -2.18
VPS13A-212ENST00000493341 SNRPGP15A8MWD9 76 aa1.44□□□□□ -2.18
VPS13A-212ENST00000493341 TMEM262E9PQX1 116 aa1.44□□□□□ -2.18
VPS13A-212ENST00000493341 IGLC2P0DOY2 106 aa1.44□□□□□ -2.18
VPS13A-212ENST00000493341 IGLC3P0DOY3 106 aa1.44□□□□□ -2.18
VPS13A-212ENST00000493341 IAPPP10997 89 aa1.44□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms