RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 PHF5AQ7RTV0 110 aaKnown RBP11.27□□□□□ -0.61
VIM-206ENST00000487938 DNAH7Q8WXX0 4024 aa11.26□□□□□ -0.61
VIM-206ENST00000487938 APLNQ9ULZ1 77 aa11.26□□□□□ -0.61
VIM-206ENST00000487938 HRCT1Q6UXD1 115 aa11.25□□□□□ -0.61
VIM-206ENST00000487938 MDFIQ99750 246 aa11.24□□□□□ -0.61
VIM-206ENST00000487938 C5orf47Q569G3 176 aa11.24□□□□□ -0.61
VIM-206ENST00000487938 SRRM2Q9UQ35 2752 aaKnown RBP11.23□□□□□ -0.61
VIM-206ENST00000487938 TENM2Q9NT68 2774 aa11.22□□□□□ -0.61
VIM-206ENST00000487938 UBE2AP49459 152 aa11.21□□□□□ -0.62
VIM-206ENST00000487938 A0A087WSZ3 146 aa11.2□□□□□ -0.62
VIM-206ENST00000487938 B9D2Q9BPU9 175 aa11.18□□□□□ -0.62
VIM-206ENST00000487938 ATP5EP56381 51 aaPredicted RBP11.18□□□□□ -0.62
VIM-206ENST00000487938 C14orf177Q52M58 125 aa11.18□□□□□ -0.62
VIM-206ENST00000487938 IGLV8-61A0A075B6I0 122 aa11.17□□□□□ -0.62
VIM-206ENST00000487938 DYNC2H1Q8NCM8 4307 aaKnown RBP11.16□□□□□ -0.62
VIM-206ENST00000487938 HCG22E2RYF7 251 aa11.16□□□□□ -0.62
VIM-206ENST00000487938 RPL37AP61513 92 aaKnown RBP11.16□□□□□ -0.62
VIM-206ENST00000487938 FP248Q71RG6 208 aaPredicted RBP11.15□□□□□ -0.62
VIM-206ENST00000487938 LINC00474Q9P2X8 69 aa11.15□□□□□ -0.62
VIM-206ENST00000487938 PLECQ15149 4684 aaKnown RBP11.14□□□□□ -0.63
VIM-206ENST00000487938 SMIM26A0A096LP01 95 aa11.14□□□□□ -0.63
VIM-206ENST00000487938 C9orf163Q8N9P6 203 aa11.14□□□□□ -0.63
VIM-206ENST00000487938 LRCOL1A6NCL2 159 aa11.14□□□□□ -0.63
VIM-206ENST00000487938 LCE6AA0A183 80 aa11.13□□□□□ -0.63
VIM-206ENST00000487938 WFDC13Q8IUB5 93 aa11.13□□□□□ -0.63
VIM-206ENST00000487938 PANO1I0J062 215 aa11.12□□□□□ -0.63
VIM-206ENST00000487938 FAM229BQ4G0N7 80 aa11.11□□□□□ -0.63
VIM-206ENST00000487938 NBDYA0A0U1RRE5 68 aa11.1□□□□□ -0.63
VIM-206ENST00000487938 H0Y9J4 135 aa11.09□□□□□ -0.63
VIM-206ENST00000487938 SPRR1BP22528 89 aa11.07□□□□□ -0.64
VIM-206ENST00000487938 ZCCHC13Q8WW36 166 aaKnown RBP11.06□□□□□ -0.64
VIM-206ENST00000487938 Q6ZRN7 208 aaPredicted RBP11.05□□□□□ -0.64
VIM-206ENST00000487938 NUPR2A6NF83 97 aa11.04□□□□□ -0.64
VIM-206ENST00000487938 MPLKIPQ8TAP9 179 aa11.02□□□□□ -0.65
VIM-206ENST00000487938 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.01□□□□□ -0.65
VIM-206ENST00000487938 LINC00472Q9H8W2 130 aa11□□□□□ -0.65
VIM-206ENST00000487938 KRTAP29-1A8MX34 341 aaPredicted RBP10.99□□□□□ -0.65
VIM-206ENST00000487938 KRTAP13-1Q8IUC0 172 aa10.99□□□□□ -0.65
VIM-206ENST00000487938 PRR15Q8IV56 129 aa10.99□□□□□ -0.65
VIM-206ENST00000487938 PRR4Q16378 134 aa10.98□□□□□ -0.65
VIM-206ENST00000487938 LINC00336Q6ZUF6 198 aa10.98□□□□□ -0.65
VIM-206ENST00000487938 CASC2Q6XLA1 102 aa10.98□□□□□ -0.65
VIM-206ENST00000487938 PKIGQ9Y2B9 76 aa10.98□□□□□ -0.65
VIM-206ENST00000487938 IGLV9-49A0A0B4J1Y8 123 aa10.96□□□□□ -0.65
VIM-206ENST00000487938 A8MWP4 228 aa10.96□□□□□ -0.65
VIM-206ENST00000487938 STARD9Q9P2P6 4700 aa10.95□□□□□ -0.66
VIM-206ENST00000487938 SPACA4Q8TDM5 124 aa10.95□□□□□ -0.66
VIM-206ENST00000487938 hDV103S1A0JD37 113 aa10.95□□□□□ -0.66
VIM-206ENST00000487938 MP68P56378 58 aa10.95□□□□□ -0.66
VIM-206ENST00000487938 C1orf64Q8NEQ6 169 aa10.95□□□□□ -0.66
VIM-206ENST00000487938 LINC00208Q96KT6 92 aa10.95□□□□□ -0.66
VIM-206ENST00000487938 VPS13DQ5THJ4 4388 aa10.93□□□□□ -0.66
VIM-206ENST00000487938 A0A087WTM6 91 aa10.91□□□□□ -0.66
VIM-206ENST00000487938 HECTD4Q9Y4D8 3996 aa10.9□□□□□ -0.66
VIM-206ENST00000487938 H0Y9P7 68 aa10.89□□□□□ -0.67
VIM-206ENST00000487938 TRAV22A0A0B4J277 110 aa10.89□□□□□ -0.67
VIM-206ENST00000487938 NDUFB1O75438 58 aa10.86□□□□□ -0.67
VIM-206ENST00000487938 KMT2AQ03164 3969 aa10.86□□□□□ -0.67
VIM-206ENST00000487938 FRAS1Q86XX4 4008 aa10.86□□□□□ -0.67
VIM-206ENST00000487938 ANAPC11Q9NYG5 84 aa10.86□□□□□ -0.67
VIM-206ENST00000487938 MMP24-AS1A0A0U1RRL7 71 aa10.85□□□□□ -0.67
VIM-206ENST00000487938 RTL8CO15255 209 aa10.84□□□□□ -0.67
VIM-206ENST00000487938 Q96NJ1 140 aa10.84□□□□□ -0.67
VIM-206ENST00000487938 PSORS1C2Q9UIG4 136 aa10.84□□□□□ -0.67
VIM-206ENST00000487938 PRKDCP78527 4128 aaKnown RBP10.84□□□□□ -0.67
VIM-206ENST00000487938 CYP4F30PQ9H0H9 118 aa10.84□□□□□ -0.67
VIM-206ENST00000487938 DNAH2Q9P225 4427 aa10.83□□□□□ -0.68
VIM-206ENST00000487938 MOBPQ13875 183 aa10.82□□□□□ -0.68
VIM-206ENST00000487938 LINC00483Q53H64 154 aa10.82□□□□□ -0.68
VIM-206ENST00000487938 PRO0628Q9UI54 55 aa10.82□□□□□ -0.68
VIM-206ENST00000487938 DNAH8Q96JB1 4490 aa10.82□□□□□ -0.68
VIM-206ENST00000487938 IGLV5-52A0A0A0MRZ9 124 aa10.8□□□□□ -0.68
VIM-206ENST00000487938 BRK1Q8WUW1 75 aa10.8□□□□□ -0.68
VIM-206ENST00000487938 WWC2-AS2Q96NR7 200 aa10.79□□□□□ -0.68
VIM-206ENST00000487938 H3BPC8 53 aa10.77□□□□□ -0.69
VIM-206ENST00000487938 DNAH17Q9UFH2 4485 aa10.77□□□□□ -0.69
VIM-206ENST00000487938 ZNF706Q9Y5V0 76 aaPredicted RBP10.76□□□□□ -0.69
VIM-206ENST00000487938 MEGF8Q7Z7M0 2845 aa10.76□□□□□ -0.69
VIM-206ENST00000487938 Q6ZR54 194 aa10.75□□□□□ -0.69
VIM-206ENST00000487938 PLAC8Q9NZF1 115 aa10.75□□□□□ -0.69
VIM-206ENST00000487938 ZNF861PO60384 105 aa10.74□□□□□ -0.69
VIM-206ENST00000487938 IGHV6-1A0A0B4J1U7 121 aa10.74□□□□□ -0.69
VIM-206ENST00000487938 Q1T7F1 81 aa10.74□□□□□ -0.69
VIM-206ENST00000487938 C8orf17Q9NRJ1 99 aa10.73□□□□□ -0.69
VIM-206ENST00000487938 FBN3Q75N90 2809 aa10.72□□□□□ -0.69
VIM-206ENST00000487938 SPANXA2-OT1Q8N9U9 137 aa10.71□□□□□ -0.69
VIM-206ENST00000487938 PSPHP1O15172 72 aa10.7□□□□□ -0.7
VIM-206ENST00000487938 ASB16-AS1Q495Z4 193 aa10.7□□□□□ -0.7
VIM-206ENST00000487938 NDUFS5O43920 106 aa10.69□□□□□ -0.7
VIM-206ENST00000487938 TGP01266 2768 aa10.69□□□□□ -0.7
VIM-206ENST00000487938 A0A1B0GVX0 72 aa10.69□□□□□ -0.7
VIM-206ENST00000487938 DNHD1Q96M86 4753 aa10.68□□□□□ -0.7
VIM-206ENST00000487938 CDK2AP2O75956 126 aa10.68□□□□□ -0.7
VIM-206ENST00000487938 A0A087X002 238 aa10.67□□□□□ -0.7
VIM-206ENST00000487938 PCOTHQ58A44 107 aa10.67□□□□□ -0.7
VIM-206ENST00000487938 C1orf134Q5TEV5 83 aa10.67□□□□□ -0.7
VIM-206ENST00000487938 NOTCH2NLQ7Z3S9 236 aa10.67□□□□□ -0.7
VIM-206ENST00000487938 TP53AIP1Q9HCN2 124 aa10.65□□□□□ -0.7
VIM-206ENST00000487938 SPINK6Q6UWN8 80 aa10.63□□□□□ -0.71
VIM-206ENST00000487938 IGLV7-43P04211 117 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms