RNA–Protein interactions for RNA: ENST00000487617.5

HDAC4-209, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 819 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-209ENST00000487617 CFC1BP0CG36 223 aa11.25□□□□□ -0.61
HDAC4-209ENST00000487617 CFC1P0CG37 223 aa11.25□□□□□ -0.61
HDAC4-209ENST00000487617 RAB37Q96AX2 223 aa11.25□□□□□ -0.61
HDAC4-209ENST00000487617 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.24□□□□□ -0.61
HDAC4-209ENST00000487617 C2orf91Q6ZV80 131 aa11.23□□□□□ -0.61
HDAC4-209ENST00000487617 C9orf92A6NGG3 77 aa11.22□□□□□ -0.61
HDAC4-209ENST00000487617 A0A0B4J2C4 111 aa11.21□□□□□ -0.61
HDAC4-209ENST00000487617 C1orf195Q5TG92 126 aa11.21□□□□□ -0.61
HDAC4-209ENST00000487617 Q6JHZ5 121 aa11.19□□□□□ -0.62
HDAC4-209ENST00000487617 IGLV8-61A0A075B6I0 122 aa11.18□□□□□ -0.62
HDAC4-209ENST00000487617 TCL1BO95988 128 aa11.18□□□□□ -0.62
HDAC4-209ENST00000487617 OCIAD2Q56VL3 154 aa11.18□□□□□ -0.62
HDAC4-209ENST00000487617 CEND1Q8N111 149 aa11.18□□□□□ -0.62
HDAC4-209ENST00000487617 KRTAP4-1Q9BYQ7 146 aa11.18□□□□□ -0.62
HDAC4-209ENST00000487617 LCE2AQ5TA79 106 aaPredicted RBP11.17□□□□□ -0.62
HDAC4-209ENST00000487617 PPDPFLQ8WWR9 84 aa11.17□□□□□ -0.62
HDAC4-209ENST00000487617 SNHG12Q9BXW3 62 aa11.17□□□□□ -0.62
HDAC4-209ENST00000487617 CLEC2BQ92478 149 aa11.16□□□□□ -0.62
HDAC4-209ENST00000487617 SNCGO76070 127 aa11.15□□□□□ -0.62
HDAC4-209ENST00000487617 IGFL1Q6UW32 110 aa11.15□□□□□ -0.62
HDAC4-209ENST00000487617 TMEM238LA0A1B0GVL6 79 aa11.14□□□□□ -0.63
HDAC4-209ENST00000487617 A6NJY4 79 aa11.14□□□□□ -0.63
HDAC4-209ENST00000487617 H0YGX0 51 aa11.14□□□□□ -0.63
HDAC4-209ENST00000487617 FAT4Q6V0I7 4981 aa11.14□□□□□ -0.63
HDAC4-209ENST00000487617 PYY3Q5JQD4 70 aa11.13□□□□□ -0.63
HDAC4-209ENST00000487617 PRO1854Q9UHT4 67 aa11.12□□□□□ -0.63
HDAC4-209ENST00000487617 TRBV7-7A0A0K0K1E9 115 aa11.11□□□□□ -0.63
HDAC4-209ENST00000487617 FXYD2P54710 66 aa11.11□□□□□ -0.63
HDAC4-209ENST00000487617 FAM218AQ96MZ4 157 aa11.11□□□□□ -0.63
HDAC4-209ENST00000487617 H3BUT2 72 aa11.1□□□□□ -0.63
HDAC4-209ENST00000487617 TMA7Q9Y2S6 64 aaKnown RBP11.1□□□□□ -0.63
HDAC4-209ENST00000487617 PCOTHQ58A44 107 aa11.08□□□□□ -0.64
HDAC4-209ENST00000487617 HSD52Q0P140 79 aa11.05□□□□□ -0.64
HDAC4-209ENST00000487617 A0A1B0GX51 115 aa11.03□□□□□ -0.64
HDAC4-209ENST00000487617 NDUFV3P56181 108 aaKnown RBP11.03□□□□□ -0.64
HDAC4-209ENST00000487617 TRIAP1O43715 76 aa11.02□□□□□ -0.65
HDAC4-209ENST00000487617 GHRHP01286 108 aa11□□□□□ -0.65
HDAC4-209ENST00000487617 FABP2P12104 132 aa10.99□□□□□ -0.65
HDAC4-209ENST00000487617 K7ERJ3 54 aa10.98□□□□□ -0.65
HDAC4-209ENST00000487617 RPL37P61927 97 aaKnown RBP10.98□□□□□ -0.65
HDAC4-209ENST00000487617 UQCR10Q9UDW1 63 aa10.98□□□□□ -0.65
HDAC4-209ENST00000487617 LST1O00453 97 aa10.97□□□□□ -0.65
HDAC4-209ENST00000487617 PSMB2P49721 201 aa10.97□□□□□ -0.65
HDAC4-209ENST00000487617 H3BMG7 143 aa10.96□□□□□ -0.65
HDAC4-209ENST00000487617 Q6Q795 121 aa10.96□□□□□ -0.65
HDAC4-209ENST00000487617 TEN1Q86WV5 123 aa10.95□□□□□ -0.66
HDAC4-209ENST00000487617 SS18L2Q9UHA2 77 aa10.94□□□□□ -0.66
HDAC4-209ENST00000487617 DNAL4O96015 105 aa10.93□□□□□ -0.66
HDAC4-209ENST00000487617 COX6CP09669 75 aa10.92□□□□□ -0.66
HDAC4-209ENST00000487617 OBSCN-AS1Q96MR7 158 aa10.9□□□□□ -0.66
HDAC4-209ENST00000487617 ORMDL1Q9P0S3 153 aa10.9□□□□□ -0.66
HDAC4-209ENST00000487617 A0A087WSZ3 146 aa10.89□□□□□ -0.67
HDAC4-209ENST00000487617 H3BQ85 93 aa10.87□□□□□ -0.67
HDAC4-209ENST00000487617 LCE2CQ5TA81 110 aa10.87□□□□□ -0.67
HDAC4-209ENST00000487617 KRTAP9-2Q9BYQ4 174 aa10.87□□□□□ -0.67
HDAC4-209ENST00000487617 KRTAP19-2Q3LHN2 52 aa10.86□□□□□ -0.67
HDAC4-209ENST00000487617 A0A1B0GV72 72 aa10.85□□□□□ -0.67
HDAC4-209ENST00000487617 A0A1W2PNM2 257 aa10.84□□□□□ -0.67
HDAC4-209ENST00000487617 TMEM256-PLSCR3K7ERE1 68 aa10.84□□□□□ -0.67
HDAC4-209ENST00000487617 ANKRD29Q8N6D5 301 aa10.84□□□□□ -0.67
HDAC4-209ENST00000487617 SCGB1C2P0DMR2 95 aa10.81□□□□□ -0.68
HDAC4-209ENST00000487617 Q75L30 129 aa10.81□□□□□ -0.68
HDAC4-209ENST00000487617 Q96NJ1 140 aa10.81□□□□□ -0.68
HDAC4-209ENST00000487617 ATP11AUNQ6ZP68 121 aa10.79□□□□□ -0.68
HDAC4-209ENST00000487617 TRACP01848 142 aa10.78□□□□□ -0.68
HDAC4-209ENST00000487617 TRBV7-4A0A0J9YYF1 115 aa10.77□□□□□ -0.69
HDAC4-209ENST00000487617 UBE2V1Q13404 147 aa10.76□□□□□ -0.69
HDAC4-209ENST00000487617 MT1HP80294 61 aa10.75□□□□□ -0.69
HDAC4-209ENST00000487617 SIGMAR1Q99720 223 aa10.75□□□□□ -0.69
HDAC4-209ENST00000487617 CCKP06307 115 aa10.73□□□□□ -0.69
HDAC4-209ENST00000487617 DSCR10P59022 87 aa10.71□□□□□ -0.69
HDAC4-209ENST00000487617 COX6B2Q6YFQ2 88 aa10.71□□□□□ -0.69
HDAC4-209ENST00000487617 C20orf166-AS1Q96NR2 134 aa10.71□□□□□ -0.69
HDAC4-209ENST00000487617 M0R143 59 aa10.7□□□□□ -0.7
HDAC4-209ENST00000487617 IGKV4-1P06312 121 aa10.7□□□□□ -0.7
HDAC4-209ENST00000487617 A8MUU9 505 aa10.68□□□□□ -0.7
HDAC4-209ENST00000487617 BAALC-AS2P0C853 105 aa10.67□□□□□ -0.7
HDAC4-209ENST00000487617 SMIM6P0DI80 62 aa10.67□□□□□ -0.7
HDAC4-209ENST00000487617 RBM3P98179 157 aaKnown RBP10.67□□□□□ -0.7
HDAC4-209ENST00000487617 VPS25Q9BRG1 176 aa10.67□□□□□ -0.7
HDAC4-209ENST00000487617 DEFB116Q30KQ4 102 aa10.65□□□□□ -0.7
HDAC4-209ENST00000487617 DSCR8Q96T75 97 aa10.65□□□□□ -0.7
HDAC4-209ENST00000487617 LINC00313P59037 77 aa10.64□□□□□ -0.71
HDAC4-209ENST00000487617 NAA38Q9BRA0 125 aaKnown RBP10.64□□□□□ -0.71
HDAC4-209ENST00000487617 LINC00472Q9H8W2 130 aa10.64□□□□□ -0.71
HDAC4-209ENST00000487617 ATXN8Q156A1 80 aa10.61□□□□□ -0.71
HDAC4-209ENST00000487617 C9JAW5 83 aa10.59□□□□□ -0.71
HDAC4-209ENST00000487617 M0R2T5 61 aa10.59□□□□□ -0.71
HDAC4-209ENST00000487617 IGHV6-1A0A0B4J1U7 121 aa10.57□□□□□ -0.72
HDAC4-209ENST00000487617 LCE2DQ5TA82 110 aaPredicted RBP10.57□□□□□ -0.72
HDAC4-209ENST00000487617 NOTCH2NLQ7Z3S9 236 aa10.57□□□□□ -0.72
HDAC4-209ENST00000487617 KRTAP16-1A8MUX0 517 aa10.56□□□□□ -0.72
HDAC4-209ENST00000487617 TSTD3H0UI37 97 aa10.55□□□□□ -0.72
HDAC4-209ENST00000487617 KRTAP10-6P60371 365 aaPredicted RBP10.54□□□□□ -0.72
HDAC4-209ENST00000487617 C21orf62-AS1Q17RA5 79 aa10.53□□□□□ -0.72
HDAC4-209ENST00000487617 JMJD7-PLA2G4BH0Y9G9 81 aa10.52□□□□□ -0.73
HDAC4-209ENST00000487617 BATFQ16520 125 aa10.52□□□□□ -0.73
HDAC4-209ENST00000487617 LORP23490 312 aaPredicted RBP10.51□□□□□ -0.73
HDAC4-209ENST00000487617 LYRM7Q5U5X0 104 aa10.51□□□□□ -0.73
HDAC4-209ENST00000487617 Q6ZQT0 140 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 141.4 ms