RNA–Protein interactions for RNA: ENST00000487026.5

LIME1-206, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LIME1, Length 805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-206ENST00000487026 KRTAP19-2Q3LHN2 52 aa13.27□□□□□ -0.29
LIME1-206ENST00000487026 LOC105371267A0A1B0GV96 52 aa13.26□□□□□ -0.29
LIME1-206ENST00000487026 A4D1N5 150 aa13.26□□□□□ -0.29
LIME1-206ENST00000487026 Q5XG85 94 aa13.26□□□□□ -0.29
LIME1-206ENST00000487026 NHP2Q9NX24 153 aaKnown RBP13.22□□□□□ -0.29
LIME1-206ENST00000487026 HIGD1BQ9P298 99 aa13.22□□□□□ -0.29
LIME1-206ENST00000487026 LCE2DQ5TA82 110 aaPredicted RBP13.2□□□□□ -0.3
LIME1-206ENST00000487026 HIST1H4GQ99525 98 aa13.2□□□□□ -0.3
LIME1-206ENST00000487026 UQCR10Q9UDW1 63 aa13.18□□□□□ -0.3
LIME1-206ENST00000487026 MT1HP80294 61 aa13.17□□□□□ -0.3
LIME1-206ENST00000487026 VAMP3Q15836 100 aa13.15□□□□□ -0.3
LIME1-206ENST00000487026 LINC00575Q6W349 94 aa13.15□□□□□ -0.3
LIME1-206ENST00000487026 TCL1BO95988 128 aa13.13□□□□□ -0.31
LIME1-206ENST00000487026 F8WEM9 126 aa13.12□□□□□ -0.31
LIME1-206ENST00000487026 RPL37P61927 97 aaKnown RBP13.11□□□□□ -0.31
LIME1-206ENST00000487026 C2orf91Q6ZV80 131 aa13.11□□□□□ -0.31
LIME1-206ENST00000487026 C12orf57Q99622 126 aa13.11□□□□□ -0.31
LIME1-206ENST00000487026 hADV29S1A0JD25 119 aa13.1□□□□□ -0.31
LIME1-206ENST00000487026 Q6ZQY7 126 aa13.1□□□□□ -0.31
LIME1-206ENST00000487026 TMEM238LA0A1B0GVL6 79 aa13.06□□□□□ -0.32
LIME1-206ENST00000487026 A6NJY4 79 aa13.06□□□□□ -0.32
LIME1-206ENST00000487026 TSTD3H0UI37 97 aa13.06□□□□□ -0.32
LIME1-206ENST00000487026 HSD52Q0P140 79 aa13.05□□□□□ -0.32
LIME1-206ENST00000487026 CEND1Q8N111 149 aa13.04□□□□□ -0.32
LIME1-206ENST00000487026 IGFL1Q6UW32 110 aa13.03□□□□□ -0.32
LIME1-206ENST00000487026 OCIAD2Q56VL3 154 aa13.02□□□□□ -0.33
LIME1-206ENST00000487026 Q6JHZ5 121 aa13.02□□□□□ -0.33
LIME1-206ENST00000487026 TRBV7-7A0A0K0K1E9 115 aa13.01□□□□□ -0.33
LIME1-206ENST00000487026 CLEC2BQ92478 149 aa13.01□□□□□ -0.33
LIME1-206ENST00000487026 CFC1BP0CG36 223 aa13□□□□□ -0.33
LIME1-206ENST00000487026 RAB37Q96AX2 223 aa12.98□□□□□ -0.33
LIME1-206ENST00000487026 CRCT1Q9UGL9 99 aa12.98□□□□□ -0.33
LIME1-206ENST00000487026 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.97□□□□□ -0.33
LIME1-206ENST00000487026 COX6B2Q6YFQ2 88 aa12.95□□□□□ -0.34
LIME1-206ENST00000487026 FSIP2Q5CZC0 6907 aa12.94□□□□□ -0.34
LIME1-206ENST00000487026 A0A0B4J2C4 111 aa12.94□□□□□ -0.34
LIME1-206ENST00000487026 LORP23490 312 aaPredicted RBP12.94□□□□□ -0.34
LIME1-206ENST00000487026 KRTAP10-6P60371 365 aaPredicted RBP12.94□□□□□ -0.34
LIME1-206ENST00000487026 BVES-AS1Q5T3Y7 98 aa12.94□□□□□ -0.34
LIME1-206ENST00000487026 SNHG12Q9BXW3 62 aa12.94□□□□□ -0.34
LIME1-206ENST00000487026 H3BUT2 72 aa12.93□□□□□ -0.34
LIME1-206ENST00000487026 M0R2T5 61 aa12.93□□□□□ -0.34
LIME1-206ENST00000487026 CFC1P0CG37 223 aa12.93□□□□□ -0.34
LIME1-206ENST00000487026 FLGP20930 4061 aaPredicted RBP12.92□□□□□ -0.34
LIME1-206ENST00000487026 M0R143 59 aa12.92□□□□□ -0.34
LIME1-206ENST00000487026 OBSCN-AS1Q96MR7 158 aa12.92□□□□□ -0.34
LIME1-206ENST00000487026 FXYD2P54710 66 aa12.91□□□□□ -0.34
LIME1-206ENST00000487026 PPDPFLQ8WWR9 84 aa12.89□□□□□ -0.35
LIME1-206ENST00000487026 PRO1854Q9UHT4 67 aa12.89□□□□□ -0.35
LIME1-206ENST00000487026 LST1O00453 97 aa12.85□□□□□ -0.35
LIME1-206ENST00000487026 ATP11AUNQ6ZP68 121 aa12.83□□□□□ -0.36
LIME1-206ENST00000487026 Q75L30 129 aa12.82□□□□□ -0.36
LIME1-206ENST00000487026 FAM218AQ96MZ4 157 aa12.8□□□□□ -0.36
LIME1-206ENST00000487026 Q96NJ1 140 aa12.79□□□□□ -0.36
LIME1-206ENST00000487026 SNCGO76070 127 aa12.78□□□□□ -0.36
LIME1-206ENST00000487026 Q6Q795 121 aa12.78□□□□□ -0.36
LIME1-206ENST00000487026 H0YGX0 51 aa12.76□□□□□ -0.37
LIME1-206ENST00000487026 NDUFV3P56181 108 aaKnown RBP12.76□□□□□ -0.37
LIME1-206ENST00000487026 K7ERJ3 54 aa12.75□□□□□ -0.37
LIME1-206ENST00000487026 COX6CP09669 75 aa12.74□□□□□ -0.37
LIME1-206ENST00000487026 SS18L2Q9UHA2 77 aa12.74□□□□□ -0.37
LIME1-206ENST00000487026 PSMB2P49721 201 aa12.73□□□□□ -0.37
LIME1-206ENST00000487026 TEN1Q86WV5 123 aa12.73□□□□□ -0.37
LIME1-206ENST00000487026 BATFQ16520 125 aa12.71□□□□□ -0.37
LIME1-206ENST00000487026 A0A087WSZ3 146 aa12.7□□□□□ -0.38
LIME1-206ENST00000487026 H3BMG7 143 aa12.68□□□□□ -0.38
LIME1-206ENST00000487026 FABP2P12104 132 aa12.67□□□□□ -0.38
LIME1-206ENST00000487026 TRIAP1O43715 76 aa12.66□□□□□ -0.38
LIME1-206ENST00000487026 C20orf166-AS1Q96NR2 134 aa12.66□□□□□ -0.38
LIME1-206ENST00000487026 SCGB1C2P0DMR2 95 aa12.65□□□□□ -0.38
LIME1-206ENST00000487026 A0A1B0GX51 115 aa12.64□□□□□ -0.39
LIME1-206ENST00000487026 A8MUU9 505 aa12.64□□□□□ -0.39
LIME1-206ENST00000487026 GHRHP01286 108 aa12.61□□□□□ -0.39
LIME1-206ENST00000487026 DSCR10P59022 87 aa12.61□□□□□ -0.39
LIME1-206ENST00000487026 A0A1W2PNM2 257 aa12.6□□□□□ -0.39
LIME1-206ENST00000487026 PCP4L1A6NKN8 68 aa12.6□□□□□ -0.39
LIME1-206ENST00000487026 LYRM7Q5U5X0 104 aa12.58□□□□□ -0.4
LIME1-206ENST00000487026 DNAL4O96015 105 aa12.56□□□□□ -0.4
LIME1-206ENST00000487026 A0A1B0GV72 72 aa12.55□□□□□ -0.4
LIME1-206ENST00000487026 SIGMAR1Q99720 223 aa12.55□□□□□ -0.4
LIME1-206ENST00000487026 H3BQ85 93 aa12.53□□□□□ -0.4
LIME1-206ENST00000487026 COL5A1-AS1Q5SY13 56 aa12.53□□□□□ -0.4
LIME1-206ENST00000487026 ANKRD29Q8N6D5 301 aa12.51□□□□□ -0.41
LIME1-206ENST00000487026 C9orf118A6NHY6 69 aa12.5□□□□□ -0.41
LIME1-206ENST00000487026 TRBV20-1A0A075B6N2 111 aa12.49□□□□□ -0.41
LIME1-206ENST00000487026 KRTAP16-1A8MUX0 517 aa12.48□□□□□ -0.41
LIME1-206ENST00000487026 TAX1BP3O14907 124 aa12.48□□□□□ -0.41
LIME1-206ENST00000487026 TRACP01848 142 aa12.48□□□□□ -0.41
LIME1-206ENST00000487026 IGKV4-1P06312 121 aa12.48□□□□□ -0.41
LIME1-206ENST00000487026 LINC00313P59037 77 aa12.48□□□□□ -0.41
LIME1-206ENST00000487026 ATXN8Q156A1 80 aa12.48□□□□□ -0.41
LIME1-206ENST00000487026 NAA38Q9BRA0 125 aaKnown RBP12.48□□□□□ -0.41
LIME1-206ENST00000487026 ORMDL1Q9P0S3 153 aa12.47□□□□□ -0.41
LIME1-206ENST00000487026 DEFB116Q30KQ4 102 aa12.46□□□□□ -0.41
LIME1-206ENST00000487026 TRBV7-4A0A0J9YYF1 115 aa12.45□□□□□ -0.42
LIME1-206ENST00000487026 NOTCH2NLQ7Z3S9 236 aa12.44□□□□□ -0.42
LIME1-206ENST00000487026 KRTAP9-8Q9BYQ0 159 aa12.43□□□□□ -0.42
LIME1-206ENST00000487026 TMEM256-PLSCR3K7ERE1 68 aa12.42□□□□□ -0.42
LIME1-206ENST00000487026 A0A1W2PPM0 123 aa12.41□□□□□ -0.42
LIME1-206ENST00000487026 LINC00472Q9H8W2 130 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms