RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 Q6ZQY7 126 aa8.04□□□□□ -1.12
VAMP4-203ENST00000474047 SMIM29Q86T20 159 aa8.04□□□□□ -1.12
VAMP4-203ENST00000474047 RNF213Q63HN8 5207 aa8.04□□□□□ -1.12
VAMP4-203ENST00000474047 A0A0B4J2C4 111 aa8.03□□□□□ -1.12
VAMP4-203ENST00000474047 CD164Q04900 197 aa8.01□□□□□ -1.13
VAMP4-203ENST00000474047 PRO1854Q9UHT4 67 aa8.01□□□□□ -1.13
VAMP4-203ENST00000474047 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8□□□□□ -1.13
VAMP4-203ENST00000474047 H0YGX0 51 aa8□□□□□ -1.13
VAMP4-203ENST00000474047 FXYD2P54710 66 aa7.99□□□□□ -1.13
VAMP4-203ENST00000474047 SNHG12Q9BXW3 62 aa7.99□□□□□ -1.13
VAMP4-203ENST00000474047 HSD52Q0P140 79 aa7.98□□□□□ -1.13
VAMP4-203ENST00000474047 UQCR10Q9UDW1 63 aa7.98□□□□□ -1.13
VAMP4-203ENST00000474047 A0A0G2JQZ4 141 aa7.98□□□□□ -1.13
VAMP4-203ENST00000474047 KRTAP13-3Q3SY46 172 aa7.97□□□□□ -1.13
VAMP4-203ENST00000474047 PPDPFLQ8WWR9 84 aa7.96□□□□□ -1.14
VAMP4-203ENST00000474047 OCIAD2Q56VL3 154 aa7.95□□□□□ -1.14
VAMP4-203ENST00000474047 Q6JHZ5 121 aa7.95□□□□□ -1.14
VAMP4-203ENST00000474047 PSMB2P49721 201 aa7.94□□□□□ -1.14
VAMP4-203ENST00000474047 TCL1BO95988 128 aa7.92□□□□□ -1.14
VAMP4-203ENST00000474047 GHRHP01286 108 aa7.92□□□□□ -1.14
VAMP4-203ENST00000474047 FAM218AQ96MZ4 157 aa7.92□□□□□ -1.14
VAMP4-203ENST00000474047 CLEC2BQ92478 149 aa7.91□□□□□ -1.14
VAMP4-203ENST00000474047 IGLV8-61A0A075B6I0 122 aa7.9□□□□□ -1.14
VAMP4-203ENST00000474047 A0A1B0GX51 115 aa7.9□□□□□ -1.14
VAMP4-203ENST00000474047 K7ERJ3 54 aa7.9□□□□□ -1.14
VAMP4-203ENST00000474047 TRIAP1O43715 76 aa7.9□□□□□ -1.14
VAMP4-203ENST00000474047 Q5XG85 94 aa7.9□□□□□ -1.14
VAMP4-203ENST00000474047 COX6CP09669 75 aa7.89□□□□□ -1.15
VAMP4-203ENST00000474047 IGFL1Q6UW32 110 aa7.89□□□□□ -1.15
VAMP4-203ENST00000474047 A0A0U1RQV1 116 aa7.89□□□□□ -1.15
VAMP4-203ENST00000474047 H3BUT2 72 aa7.88□□□□□ -1.15
VAMP4-203ENST00000474047 DNAL4O96015 105 aa7.88□□□□□ -1.15
VAMP4-203ENST00000474047 FABP2P12104 132 aa7.88□□□□□ -1.15
VAMP4-203ENST00000474047 NDUFV3P56181 108 aaKnown RBP7.87□□□□□ -1.15
VAMP4-203ENST00000474047 SEC61BP60468 96 aaKnown RBP7.86□□□□□ -1.15
VAMP4-203ENST00000474047 C1orf195Q5TG92 126 aa7.86□□□□□ -1.15
VAMP4-203ENST00000474047 C9orf92A6NGG3 77 aa7.86□□□□□ -1.15
VAMP4-203ENST00000474047 TRBV7-7A0A0K0K1E9 115 aa7.85□□□□□ -1.15
VAMP4-203ENST00000474047 SCGB1C2P0DMR2 95 aa7.83□□□□□ -1.16
VAMP4-203ENST00000474047 ASB16-AS1Q495Z4 193 aa7.83□□□□□ -1.16
VAMP4-203ENST00000474047 XP32Q5T750 250 aa7.83□□□□□ -1.16
VAMP4-203ENST00000474047 H3BMG7 143 aa7.83□□□□□ -1.16
VAMP4-203ENST00000474047 SMIM6P0DI80 62 aa7.83□□□□□ -1.16
VAMP4-203ENST00000474047 ORMDL1Q9P0S3 153 aa7.83□□□□□ -1.16
VAMP4-203ENST00000474047 H3BQ85 93 aa7.81□□□□□ -1.16
VAMP4-203ENST00000474047 M0R143 59 aa7.8□□□□□ -1.16
VAMP4-203ENST00000474047 TEN1Q86WV5 123 aa7.79□□□□□ -1.16
VAMP4-203ENST00000474047 TMEM256-PLSCR3K7ERE1 68 aa7.78□□□□□ -1.16
VAMP4-203ENST00000474047 LST1O00453 97 aa7.78□□□□□ -1.16
VAMP4-203ENST00000474047 SS18L2Q9UHA2 77 aa7.78□□□□□ -1.16
VAMP4-203ENST00000474047 A0A1B0GV72 72 aa7.76□□□□□ -1.17
VAMP4-203ENST00000474047 Q6Q795 121 aa7.76□□□□□ -1.17
VAMP4-203ENST00000474047 TSTD3H0UI37 97 aa7.75□□□□□ -1.17
VAMP4-203ENST00000474047 ANKRD29Q8N6D5 301 aa7.75□□□□□ -1.17
VAMP4-203ENST00000474047 TRACP01848 142 aa7.75□□□□□ -1.17
VAMP4-203ENST00000474047 A0A087WSZ3 146 aa7.73□□□□□ -1.17
VAMP4-203ENST00000474047 PCOTHQ58A44 107 aa7.72□□□□□ -1.17
VAMP4-203ENST00000474047 MUC2Q02817 5179 aa7.71□□□□□ -1.17
VAMP4-203ENST00000474047 UBE2V1Q13404 147 aa7.71□□□□□ -1.18
VAMP4-203ENST00000474047 MUC17Q685J3 4493 aa7.7□□□□□ -1.18
VAMP4-203ENST00000474047 FAT4Q6V0I7 4981 aa7.7□□□□□ -1.18
VAMP4-203ENST00000474047 LOC105371267A0A1B0GV96 52 aa7.69□□□□□ -1.18
VAMP4-203ENST00000474047 BATFQ16520 125 aa7.69□□□□□ -1.18
VAMP4-203ENST00000474047 NAA38Q9BRA0 125 aaKnown RBP7.69□□□□□ -1.18
VAMP4-203ENST00000474047 A0A1W2PNM2 257 aa7.69□□□□□ -1.18
VAMP4-203ENST00000474047 BAALC-AS2P0C853 105 aa7.68□□□□□ -1.18
VAMP4-203ENST00000474047 CCKP06307 115 aa7.67□□□□□ -1.18
VAMP4-203ENST00000474047 ATXN8Q156A1 80 aa7.67□□□□□ -1.18
VAMP4-203ENST00000474047 OBSCN-AS1Q96MR7 158 aa7.67□□□□□ -1.18
VAMP4-203ENST00000474047 KRTAP4-1Q9BYQ7 146 aa7.67□□□□□ -1.18
VAMP4-203ENST00000474047 TRBV7-4A0A0J9YYF1 115 aa7.66□□□□□ -1.18
VAMP4-203ENST00000474047 RBM3P98179 157 aaKnown RBP7.66□□□□□ -1.18
VAMP4-203ENST00000474047 RPL37P61927 97 aaKnown RBP7.66□□□□□ -1.18
VAMP4-203ENST00000474047 DSCR8Q96T75 97 aa7.66□□□□□ -1.18
VAMP4-203ENST00000474047 VPS25Q9BRG1 176 aa7.66□□□□□ -1.18
VAMP4-203ENST00000474047 LYRM7Q5U5X0 104 aa7.65□□□□□ -1.18
VAMP4-203ENST00000474047 SIGMAR1Q99720 223 aa7.64□□□□□ -1.19
VAMP4-203ENST00000474047 Q96NJ1 140 aa7.63□□□□□ -1.19
VAMP4-203ENST00000474047 C9JAW5 83 aa7.61□□□□□ -1.19
VAMP4-203ENST00000474047 IGKV4-1P06312 121 aa7.61□□□□□ -1.19
VAMP4-203ENST00000474047 ATP11AUNQ6ZP68 121 aa7.6□□□□□ -1.19
VAMP4-203ENST00000474047 KRTAP3-3Q9BYR6 98 aa7.6□□□□□ -1.19
VAMP4-203ENST00000474047 KRTAP3-2Q9BYR7 98 aa7.6□□□□□ -1.19
VAMP4-203ENST00000474047 TRBV20-1A0A075B6N2 111 aa7.59□□□□□ -1.19
VAMP4-203ENST00000474047 JMJD7-PLA2G4BH0Y9G9 81 aa7.58□□□□□ -1.2
VAMP4-203ENST00000474047 Q75L30 129 aa7.58□□□□□ -1.2
VAMP4-203ENST00000474047 DEFB116Q30KQ4 102 aa7.57□□□□□ -1.2
VAMP4-203ENST00000474047 LCE2AQ5TA79 106 aaPredicted RBP7.57□□□□□ -1.2
VAMP4-203ENST00000474047 C21orf62-AS1Q17RA5 79 aa7.56□□□□□ -1.2
VAMP4-203ENST00000474047 C9orf118A6NHY6 69 aa7.55□□□□□ -1.2
VAMP4-203ENST00000474047 DSCR10P59022 87 aa7.55□□□□□ -1.2
VAMP4-203ENST00000474047 LINC00313P59037 77 aa7.54□□□□□ -1.2
VAMP4-203ENST00000474047 LINC00472Q9H8W2 130 aa7.54□□□□□ -1.2
VAMP4-203ENST00000474047 PDE6GP18545 87 aa7.52□□□□□ -1.21
VAMP4-203ENST00000474047 IGHV6-1A0A0B4J1U7 121 aa7.51□□□□□ -1.21
VAMP4-203ENST00000474047 TAX1BP3O14907 124 aa7.51□□□□□ -1.21
VAMP4-203ENST00000474047 LOC110117498A0A087WWA1 95 aa7.5□□□□□ -1.21
VAMP4-203ENST00000474047 A0A1W2PPM0 123 aa7.5□□□□□ -1.21
VAMP4-203ENST00000474047 Q6ZQT0 140 aa7.5□□□□□ -1.21
VAMP4-203ENST00000474047 C20orf166-AS1Q96NR2 134 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms