RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 STAB2Q8WWQ8 2551 aa3.48□□□□□ -1.85
SYNE1-220ENST00000471834 PHF5AQ7RTV0 110 aaKnown RBP3.48□□□□□ -1.85
SYNE1-220ENST00000471834 PRR15Q8IV56 129 aa3.48□□□□□ -1.85
SYNE1-220ENST00000471834 SPACA4Q8TDM5 124 aa3.48□□□□□ -1.85
SYNE1-220ENST00000471834 A0A087WSZ3 146 aa3.48□□□□□ -1.85
SYNE1-220ENST00000471834 A0A1W2PNM2 257 aa3.48□□□□□ -1.85
SYNE1-220ENST00000471834 PDZD2O15018 2839 aa3.48□□□□□ -1.85
SYNE1-220ENST00000471834 TENM1Q9UKZ4 2725 aa3.48□□□□□ -1.85
SYNE1-220ENST00000471834 MOBPQ13875 183 aa3.47□□□□□ -1.85
SYNE1-220ENST00000471834 IGKV2D-30A0A075B6S6 120 aa3.47□□□□□ -1.85
SYNE1-220ENST00000471834 IGKV2-30P06310 120 aa3.47□□□□□ -1.85
SYNE1-220ENST00000471834 TM2D3Q9BRN9 247 aa3.47□□□□□ -1.85
SYNE1-220ENST00000471834 FAM168BA1KXE4 195 aa3.47□□□□□ -1.85
SYNE1-220ENST00000471834 DSCR10P59022 87 aa3.47□□□□□ -1.85
SYNE1-220ENST00000471834 Q8NBF4 154 aa3.47□□□□□ -1.85
SYNE1-220ENST00000471834 C1orf64Q8NEQ6 169 aa3.46□□□□□ -1.86
SYNE1-220ENST00000471834 KRTAP3-3Q9BYR6 98 aa3.46□□□□□ -1.86
SYNE1-220ENST00000471834 KRTAP3-2Q9BYR7 98 aa3.46□□□□□ -1.86
SYNE1-220ENST00000471834 MAST4O15021 2626 aa3.46□□□□□ -1.86
SYNE1-220ENST00000471834 ANKRD17O75179 2603 aaKnown RBP3.46□□□□□ -1.86
SYNE1-220ENST00000471834 RBM12B-AS1Q9P1G2 102 aa3.46□□□□□ -1.86
SYNE1-220ENST00000471834 C9orf163Q8N9P6 203 aa3.46□□□□□ -1.86
SYNE1-220ENST00000471834 NBEAL1Q6ZS30 2694 aa3.46□□□□□ -1.86
SYNE1-220ENST00000471834 CNBPP62633 177 aaKnown RBP3.45□□□□□ -1.86
SYNE1-220ENST00000471834 C6orf48Q9UBA6 75 aa3.45□□□□□ -1.86
SYNE1-220ENST00000471834 KRTAP7-1Q8IUC3 87 aa3.45□□□□□ -1.86
SYNE1-220ENST00000471834 SPAG11AQ6PDA7 123 aa3.45□□□□□ -1.86
SYNE1-220ENST00000471834 Q8NAQ8 132 aa3.45□□□□□ -1.86
SYNE1-220ENST00000471834 TENM3Q9P273 2699 aa3.44□□□□□ -1.86
SYNE1-220ENST00000471834 ST20-AS1Q8NBB2 130 aa3.44□□□□□ -1.86
SYNE1-220ENST00000471834 NBEAL2Q6ZNJ1 2754 aa3.44□□□□□ -1.86
SYNE1-220ENST00000471834 ITPR2Q14571 2701 aa3.43□□□□□ -1.86
SYNE1-220ENST00000471834 Q5VSD8 79 aa3.43□□□□□ -1.86
SYNE1-220ENST00000471834 COL12A1Q99715 3063 aa3.43□□□□□ -1.86
SYNE1-220ENST00000471834 Q8N377 158 aa3.43□□□□□ -1.86
SYNE1-220ENST00000471834 A0A1B0GU69 56 aa3.43□□□□□ -1.86
SYNE1-220ENST00000471834 LINC00313P59037 77 aa3.42□□□□□ -1.86
SYNE1-220ENST00000471834 K7EIL1 84 aa3.42□□□□□ -1.86
SYNE1-220ENST00000471834 C15orf56Q8N910 161 aa3.42□□□□□ -1.86
SYNE1-220ENST00000471834 CASC10Q5T4H9 136 aa3.41□□□□□ -1.86
SYNE1-220ENST00000471834 Q96NJ1 140 aa3.41□□□□□ -1.86
SYNE1-220ENST00000471834 LINC00476Q8WZB0 136 aa3.41□□□□□ -1.86
SYNE1-220ENST00000471834 F8P00451 2351 aa3.41□□□□□ -1.86
SYNE1-220ENST00000471834 Q6ZRX8 168 aa3.41□□□□□ -1.86
SYNE1-220ENST00000471834 KRTAP13-3Q3SY46 172 aa3.41□□□□□ -1.86
SYNE1-220ENST00000471834 Q8N9P0 234 aaPredicted RBP3.4□□□□□ -1.86
SYNE1-220ENST00000471834 Q6ZSA8 131 aa3.4□□□□□ -1.87
SYNE1-220ENST00000471834 ACYP2P14621 99 aa3.4□□□□□ -1.87
SYNE1-220ENST00000471834 LINC00304Q8N9R0 145 aa3.4□□□□□ -1.87
SYNE1-220ENST00000471834 KTN1-AS1Q86SY8 53 aa3.39□□□□□ -1.87
SYNE1-220ENST00000471834 C8orf87E5RJ46 101 aa3.39□□□□□ -1.87
SYNE1-220ENST00000471834 H3BS24 57 aa3.39□□□□□ -1.87
SYNE1-220ENST00000471834 PRR26Q8N8Z3 221 aa3.39□□□□□ -1.87
SYNE1-220ENST00000471834 IGLV1-50A0A075B6I6 118 aa3.39□□□□□ -1.87
SYNE1-220ENST00000471834 KRTAP13-1Q8IUC0 172 aa3.39□□□□□ -1.87
SYNE1-220ENST00000471834 LINC00472Q9H8W2 130 aa3.39□□□□□ -1.87
SYNE1-220ENST00000471834 C9orf92A6NGG3 77 aa3.39□□□□□ -1.87
SYNE1-220ENST00000471834 LCA10Q71F78 164 aa3.39□□□□□ -1.87
SYNE1-220ENST00000471834 ZFHX4Q86UP3 3567 aa3.39□□□□□ -1.87
SYNE1-220ENST00000471834 KRTAP10-11P60412 298 aa3.38□□□□□ -1.87
SYNE1-220ENST00000471834 SPINT4Q6UDR6 99 aa3.38□□□□□ -1.87
SYNE1-220ENST00000471834 FAM229BQ4G0N7 80 aa3.38□□□□□ -1.87
SYNE1-220ENST00000471834 Q6ZR54 194 aa3.37□□□□□ -1.87
SYNE1-220ENST00000471834 KMT2BQ9UMN6 2715 aaPredicted RBP3.37□□□□□ -1.87
SYNE1-220ENST00000471834 ACANP16112 2415 aa3.37□□□□□ -1.87
SYNE1-220ENST00000471834 A0A0G2JQZ4 141 aa3.37□□□□□ -1.87
SYNE1-220ENST00000471834 A0A1W2PNN7 141 aa3.37□□□□□ -1.87
SYNE1-220ENST00000471834 K7EQZ3 153 aa3.36□□□□□ -1.87
SYNE1-220ENST00000471834 Q5VV11 94 aa3.36□□□□□ -1.87
SYNE1-220ENST00000471834 Q75L30 129 aa3.36□□□□□ -1.87
SYNE1-220ENST00000471834 TRAV22A0A0B4J277 110 aa3.36□□□□□ -1.87
SYNE1-220ENST00000471834 KRTAP10-3P60369 221 aa3.36□□□□□ -1.87
SYNE1-220ENST00000471834 A6NN06 94 aa3.36□□□□□ -1.87
SYNE1-220ENST00000471834 ATRQ13535 2644 aa3.36□□□□□ -1.87
SYNE1-220ENST00000471834 SPENQ96T58 3664 aaKnown RBP3.36□□□□□ -1.87
SYNE1-220ENST00000471834 SEC61BP60468 96 aaKnown RBP3.36□□□□□ -1.87
SYNE1-220ENST00000471834 LINC01558Q9Y6Z2 57 aa3.36□□□□□ -1.87
SYNE1-220ENST00000471834 TENM4Q6N022 2769 aa3.36□□□□□ -1.87
SYNE1-220ENST00000471834 DNAH10OSP0CZ25 163 aa3.35□□□□□ -1.87
SYNE1-220ENST00000471834 IGLV7-46A0A075B6I9 117 aa3.35□□□□□ -1.87
SYNE1-220ENST00000471834 BAHCC1Q9P281 2608 aa3.35□□□□□ -1.87
SYNE1-220ENST00000471834 ASPMQ8IZT6 3477 aa3.35□□□□□ -1.87
SYNE1-220ENST00000471834 KRTAP21-3Q3LHN1 58 aa3.35□□□□□ -1.87
SYNE1-220ENST00000471834 PSORS1C2Q9UIG4 136 aa3.34□□□□□ -1.87
SYNE1-220ENST00000471834 TP53AIP1Q9HCN2 124 aa3.34□□□□□ -1.87
SYNE1-220ENST00000471834 OTOGQ6ZRI0 2925 aa3.34□□□□□ -1.88
SYNE1-220ENST00000471834 COA5Q86WW8 74 aa3.33□□□□□ -1.88
SYNE1-220ENST00000471834 DCHS1Q96JQ0 3298 aa3.33□□□□□ -1.88
SYNE1-220ENST00000471834 APLNQ9ULZ1 77 aa3.33□□□□□ -1.88
SYNE1-220ENST00000471834 ANAPC11Q9NYG5 84 aa3.33□□□□□ -1.88
SYNE1-220ENST00000471834 SSBP3-AS1Q7Z2R9 100 aa3.32□□□□□ -1.88
SYNE1-220ENST00000471834 A8MWP4 228 aa3.32□□□□□ -1.88
SYNE1-220ENST00000471834 MMP24-AS1A0A0U1RRL7 71 aa3.31□□□□□ -1.88
SYNE1-220ENST00000471834 IGFL1Q6UW32 110 aa3.31□□□□□ -1.88
SYNE1-220ENST00000471834 NOTCH1P46531 2555 aa3.31□□□□□ -1.88
SYNE1-220ENST00000471834 ZFHX3Q15911 3703 aa3.3□□□□□ -1.88
SYNE1-220ENST00000471834 A0A087WTM6 91 aa3.3□□□□□ -1.88
SYNE1-220ENST00000471834 SMG1Q96Q15 3661 aaKnown RBP3.29□□□□□ -1.88
SYNE1-220ENST00000471834 MRPL34Q9BQ48 92 aaKnown RBP3.29□□□□□ -1.88
SYNE1-220ENST00000471834 LINC00483Q53H64 154 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms