RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 PRO1933Q9H354 126 aa1.04□□□□□ -2.24
VPS13A-210ENST00000471439 CD3DP04234 171 aa1.03□□□□□ -2.24
VPS13A-210ENST00000471439 FXYD2P54710 66 aa1.03□□□□□ -2.24
VPS13A-210ENST00000471439 KRTAP6-2Q3LI66 62 aa1.03□□□□□ -2.24
VPS13A-210ENST00000471439 RNASE10Q5GAN6 216 aaKnown RBP1.03□□□□□ -2.24
VPS13A-210ENST00000471439 Q8IZM0 81 aa1.03□□□□□ -2.24
VPS13A-210ENST00000471439 C5orf17Q8NAS9 161 aa1.03□□□□□ -2.24
VPS13A-210ENST00000471439 CRIPTQ9P021 101 aa1.03□□□□□ -2.24
VPS13A-210ENST00000471439 IGKV3D-7A0A0C4DH55 119 aa1.02□□□□□ -2.25
VPS13A-210ENST00000471439 UBE2L5PA0A1B0GUS4 154 aa1.02□□□□□ -2.25
VPS13A-210ENST00000471439 A0A1B0GV50 99 aa1.02□□□□□ -2.25
VPS13A-210ENST00000471439 IFNA1P01562 189 aa1.02□□□□□ -2.25
VPS13A-210ENST00000471439 NDUFA6P56556 154 aa1.02□□□□□ -2.25
VPS13A-210ENST00000471439 EPDR1Q9UM22 224 aa1.02□□□□□ -2.25
VPS13A-210ENST00000471439 PDE6GP18545 87 aa1.01□□□□□ -2.25
VPS13A-210ENST00000471439 HIST1H2BOP23527 126 aa1.01□□□□□ -2.25
VPS13A-210ENST00000471439 HIST1H2BBP33778 126 aa1.01□□□□□ -2.25
VPS13A-210ENST00000471439 AKR1D1P51857 326 aa1.01□□□□□ -2.25
VPS13A-210ENST00000471439 HIST1H2BDP58876 126 aa1.01□□□□□ -2.25
VPS13A-210ENST00000471439 HIST1H2BCP62807 126 aa1.01□□□□□ -2.25
VPS13A-210ENST00000471439 HIST2H2BEQ16778 126 aa1.01□□□□□ -2.25
VPS13A-210ENST00000471439 KHDC3LQ587J8 217 aa1.01□□□□□ -2.25
VPS13A-210ENST00000471439 HIST2H2BFQ5QNW6 126 aaPredicted RBP1.01□□□□□ -2.25
VPS13A-210ENST00000471439 SNX29P2Q8IUI4 249 aa1.01□□□□□ -2.25
VPS13A-210ENST00000471439 HIST1H2BHQ93079 126 aa1.01□□□□□ -2.25
VPS13A-210ENST00000471439 S100A16Q96FQ6 103 aaKnown RBP1.01□□□□□ -2.25
VPS13A-210ENST00000471439 HIST1H2BNQ99877 126 aa1.01□□□□□ -2.25
VPS13A-210ENST00000471439 HIST1H2BMQ99879 126 aa1.01□□□□□ -2.25
VPS13A-210ENST00000471439 NPCDR1Q9BY65 106 aa1.01□□□□□ -2.25
VPS13A-210ENST00000471439 KCNQ1DNQ9H478 68 aa1.01□□□□□ -2.25
VPS13A-210ENST00000471439 GSKIPQ9P0R6 139 aa1.01□□□□□ -2.25
VPS13A-210ENST00000471439 F8W036 122 aa1□□□□□ -2.25
VPS13A-210ENST00000471439 SPRR1BP22528 89 aa1□□□□□ -2.25
VPS13A-210ENST00000471439 SULT1A1P50225 295 aa1□□□□□ -2.25
VPS13A-210ENST00000471439 LAMTOR3Q9UHA4 124 aa1□□□□□ -2.25
VPS13A-210ENST00000471439 NDUFA5Q16718 116 aa0.99□□□□□ -2.25
VPS13A-210ENST00000471439 KRTAP19-5Q3LI72 72 aa0.99□□□□□ -2.25
VPS13A-210ENST00000471439 Q6ZQT0 140 aa0.99□□□□□ -2.25
VPS13A-210ENST00000471439 Q6ZRX8 168 aa0.99□□□□□ -2.25
VPS13A-210ENST00000471439 ANKRD29Q8N6D5 301 aa0.99□□□□□ -2.25
VPS13A-210ENST00000471439 TRDV1A0A1B0GX56 115 aa0.98□□□□□ -2.25
VPS13A-210ENST00000471439 HBBP68871 147 aa0.98□□□□□ -2.25
VPS13A-210ENST00000471439 D6R8Y8 96 aa0.97□□□□□ -2.25
VPS13A-210ENST00000471439 POLR2KP53803 58 aaKnown RBP0.97□□□□□ -2.25
VPS13A-210ENST00000471439 RPL39P62891 51 aaKnown RBP0.97□□□□□ -2.25
VPS13A-210ENST00000471439 MCFD2Q8NI22 146 aa0.97□□□□□ -2.25
VPS13A-210ENST00000471439 SCGB3A1Q96QR1 104 aa0.97□□□□□ -2.25
VPS13A-210ENST00000471439 C10orf95Q9H7T3 257 aa0.97□□□□□ -2.25
VPS13A-210ENST00000471439 ZFP30Q9Y2G7 519 aa0.97□□□□□ -2.25
VPS13A-210ENST00000471439 PIGBOS1A0A0B4J2F0 54 aa0.96□□□□□ -2.26
VPS13A-210ENST00000471439 TRBV27A0A0K0K1C4 114 aa0.96□□□□□ -2.26
VPS13A-210ENST00000471439 HMGB3O15347 200 aaKnown RBP0.96□□□□□ -2.26
VPS13A-210ENST00000471439 IGLC6P0CF74 106 aa0.96□□□□□ -2.26
VPS13A-210ENST00000471439 SDC2P34741 201 aa0.96□□□□□ -2.26
VPS13A-210ENST00000471439 ANP32BQ92688 251 aaKnown RBP0.96□□□□□ -2.26
VPS13A-210ENST00000471439 TOMM6Q96B49 74 aa0.96□□□□□ -2.26
VPS13A-210ENST00000471439 AMELXQ99217 191 aa0.96□□□□□ -2.26
VPS13A-210ENST00000471439 ST20Q9HBF5 79 aa0.96□□□□□ -2.26
VPS13A-210ENST00000471439 TRBV10-3A0A0K0K1G6 114 aa0.95□□□□□ -2.26
VPS13A-210ENST00000471439 FCER1GP30273 86 aa0.95□□□□□ -2.26
VPS13A-210ENST00000471439 MRPS36P82909 103 aaKnown RBP0.95□□□□□ -2.26
VPS13A-210ENST00000471439 KRTAP21-1Q3LI58 79 aa0.95□□□□□ -2.26
VPS13A-210ENST00000471439 PYDC1Q8WXC3 89 aa0.95□□□□□ -2.26
VPS13A-210ENST00000471439 NCR3O14931 201 aa0.94□□□□□ -2.26
VPS13A-210ENST00000471439 S100A11P31949 105 aa0.94□□□□□ -2.26
VPS13A-210ENST00000471439 KRTAP6-1Q3LI64 71 aa0.94□□□□□ -2.26
VPS13A-210ENST00000471439 CSAG1Q6PB30 78 aa0.94□□□□□ -2.26
VPS13A-210ENST00000471439 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP0.94□□□□□ -2.26
VPS13A-210ENST00000471439 TMEM229BQ8NBD8 167 aa0.94□□□□□ -2.26
VPS13A-210ENST00000471439 TEX261Q6UWH6 196 aa0.93□□□□□ -2.26
VPS13A-210ENST00000471439 COX7B2Q8TF08 81 aa0.92□□□□□ -2.26
VPS13A-210ENST00000471439 SPANXA1Q9NS26 97 aa0.92□□□□□ -2.26
VPS13A-210ENST00000471439 CDKN2A-AS1Q9UH64 79 aa0.92□□□□□ -2.26
VPS13A-210ENST00000471439 CYSLTR1Q9Y271 337 aa0.92□□□□□ -2.26
VPS13A-210ENST00000471439 SMIM31A0A1B0GVY4 71 aa0.91□□□□□ -2.26
VPS13A-210ENST00000471439 UBE2G1P62253 170 aa0.91□□□□□ -2.26
VPS13A-210ENST00000471439 RHEBQ15382 184 aa0.91□□□□□ -2.26
VPS13A-210ENST00000471439 TMEM128Q5BJH2 165 aa0.91□□□□□ -2.26
VPS13A-210ENST00000471439 LINC00299Q6ZSB3 139 aa0.91□□□□□ -2.26
VPS13A-210ENST00000471439 HIST3H2BBQ8N257 126 aa0.91□□□□□ -2.26
VPS13A-210ENST00000471439 DEFB105AQ8NG35 78 aa0.91□□□□□ -2.26
VPS13A-210ENST00000471439 FAM107BQ9H098 131 aa0.91□□□□□ -2.26
VPS13A-210ENST00000471439 TMEM191AQ9H0A3 160 aa0.91□□□□□ -2.26
VPS13A-210ENST00000471439 TRBV7-7A0A0K0K1E9 115 aa0.9□□□□□ -2.27
VPS13A-210ENST00000471439 F2Z2F3 143 aa0.9□□□□□ -2.27
VPS13A-210ENST00000471439 C17orf112F2Z3M2 114 aa0.9□□□□□ -2.27
VPS13A-210ENST00000471439 SFT2D2O95562 160 aa0.9□□□□□ -2.27
VPS13A-210ENST00000471439 GCHFRP30047 84 aa0.9□□□□□ -2.27
VPS13A-210ENST00000471439 S100A12P80511 92 aa0.9□□□□□ -2.27
VPS13A-210ENST00000471439 LINC01554Q52M75 96 aa0.9□□□□□ -2.27
VPS13A-210ENST00000471439 PRRT1Q99946 306 aa0.9□□□□□ -2.27
VPS13A-210ENST00000471439 C9orf16Q9BUW7 83 aa0.9□□□□□ -2.27
VPS13A-210ENST00000471439 ERG28Q9UKR5 140 aa0.9□□□□□ -2.27
VPS13A-210ENST00000471439 CEBPGP53567 150 aa0.89□□□□□ -2.27
VPS13A-210ENST00000471439 OSTCQ9NRP0 149 aa0.89□□□□□ -2.27
VPS13A-210ENST00000471439 SCP2D1Q9UJQ7 156 aa0.89□□□□□ -2.27
VPS13A-210ENST00000471439 SNURFQ9Y675 71 aa0.89□□□□□ -2.27
VPS13A-210ENST00000471439 MUC16Q8WXI7 14507 aa0.88□□□□□ -2.27
VPS13A-210ENST00000471439 A0A1W2PRE2 83 aa0.88□□□□□ -2.27
VPS13A-210ENST00000471439 AKAIN1P0CW23 69 aa0.88□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms