RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 TMA7Q9Y2S6 64 aaKnown RBP8.8□□□□□ -1
COL9A3-208ENST00000469802 C14orf144Q96I85 54 aa8.79□□□□□ -1
COL9A3-208ENST00000469802 IGLV8-61A0A075B6I0 122 aa8.78□□□□□ -1
COL9A3-208ENST00000469802 KRTAP9-6A0A140TA67 174 aa8.78□□□□□ -1
COL9A3-208ENST00000469802 LINC00575Q6W349 94 aa8.78□□□□□ -1
COL9A3-208ENST00000469802 HIGD1BQ9P298 99 aa8.76□□□□□ -1.01
COL9A3-208ENST00000469802 VAMP3Q15836 100 aa8.75□□□□□ -1.01
COL9A3-208ENST00000469802 PYY3Q5JQD4 70 aa8.74□□□□□ -1.01
COL9A3-208ENST00000469802 LCE2DQ5TA82 110 aaPredicted RBP8.74□□□□□ -1.01
COL9A3-208ENST00000469802 Q6ZQY7 126 aa8.74□□□□□ -1.01
COL9A3-208ENST00000469802 F8WEM9 126 aa8.73□□□□□ -1.01
COL9A3-208ENST00000469802 TCL1BO95988 128 aa8.73□□□□□ -1.01
COL9A3-208ENST00000469802 RPL37P61927 97 aaKnown RBP8.73□□□□□ -1.01
COL9A3-208ENST00000469802 MT1HP80294 61 aa8.73□□□□□ -1.01
COL9A3-208ENST00000469802 hADV29S1A0JD25 119 aa8.72□□□□□ -1.01
COL9A3-208ENST00000469802 C12orf57Q99622 126 aa8.72□□□□□ -1.01
COL9A3-208ENST00000469802 Q6JHZ5 121 aa8.71□□□□□ -1.02
COL9A3-208ENST00000469802 CLEC2BQ92478 149 aa8.71□□□□□ -1.02
COL9A3-208ENST00000469802 C2orf91Q6ZV80 131 aa8.7□□□□□ -1.02
COL9A3-208ENST00000469802 IGFL1Q6UW32 110 aa8.69□□□□□ -1.02
COL9A3-208ENST00000469802 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.69□□□□□ -1.02
COL9A3-208ENST00000469802 TRBV7-7A0A0K0K1E9 115 aa8.68□□□□□ -1.02
COL9A3-208ENST00000469802 RAB37Q96AX2 223 aa8.68□□□□□ -1.02
COL9A3-208ENST00000469802 TMEM238LA0A1B0GVL6 79 aa8.67□□□□□ -1.02
COL9A3-208ENST00000469802 A6NJY4 79 aa8.67□□□□□ -1.02
COL9A3-208ENST00000469802 BVES-AS1Q5T3Y7 98 aa8.67□□□□□ -1.02
COL9A3-208ENST00000469802 PPDPFLQ8WWR9 84 aa8.67□□□□□ -1.02
COL9A3-208ENST00000469802 A0A0B4J2C4 111 aa8.66□□□□□ -1.02
COL9A3-208ENST00000469802 CFC1BP0CG36 223 aa8.66□□□□□ -1.02
COL9A3-208ENST00000469802 CFC1P0CG37 223 aa8.66□□□□□ -1.02
COL9A3-208ENST00000469802 OCIAD2Q56VL3 154 aa8.66□□□□□ -1.02
COL9A3-208ENST00000469802 CEND1Q8N111 149 aa8.66□□□□□ -1.02
COL9A3-208ENST00000469802 FLGP20930 4061 aaPredicted RBP8.61□□□□□ -1.03
COL9A3-208ENST00000469802 HSD52Q0P140 79 aa8.61□□□□□ -1.03
COL9A3-208ENST00000469802 UQCR10Q9UDW1 63 aa8.61□□□□□ -1.03
COL9A3-208ENST00000469802 LORP23490 312 aaPredicted RBP8.6□□□□□ -1.03
COL9A3-208ENST00000469802 H3BUT2 72 aa8.59□□□□□ -1.03
COL9A3-208ENST00000469802 SNCGO76070 127 aa8.59□□□□□ -1.03
COL9A3-208ENST00000469802 FXYD2P54710 66 aa8.59□□□□□ -1.03
COL9A3-208ENST00000469802 PRO1854Q9UHT4 67 aa8.59□□□□□ -1.03
COL9A3-208ENST00000469802 SNHG12Q9BXW3 62 aa8.58□□□□□ -1.04
COL9A3-208ENST00000469802 H0YGX0 51 aa8.57□□□□□ -1.04
COL9A3-208ENST00000469802 KRTAP10-6P60371 365 aaPredicted RBP8.57□□□□□ -1.04
COL9A3-208ENST00000469802 Q6Q795 121 aa8.56□□□□□ -1.04
COL9A3-208ENST00000469802 Q75L30 129 aa8.56□□□□□ -1.04
COL9A3-208ENST00000469802 OBSCN-AS1Q96MR7 158 aa8.56□□□□□ -1.04
COL9A3-208ENST00000469802 FSIP2Q5CZC0 6907 aa8.56□□□□□ -1.04
COL9A3-208ENST00000469802 FAM218AQ96MZ4 157 aa8.55□□□□□ -1.04
COL9A3-208ENST00000469802 LST1O00453 97 aa8.53□□□□□ -1.04
COL9A3-208ENST00000469802 CRCT1Q9UGL9 99 aa8.53□□□□□ -1.04
COL9A3-208ENST00000469802 COX6B2Q6YFQ2 88 aa8.52□□□□□ -1.05
COL9A3-208ENST00000469802 SS18L2Q9UHA2 77 aa8.52□□□□□ -1.05
COL9A3-208ENST00000469802 A0A1B0GX51 115 aa8.51□□□□□ -1.05
COL9A3-208ENST00000469802 SMIM6P0DI80 62 aa8.51□□□□□ -1.05
COL9A3-208ENST00000469802 NDUFV3P56181 108 aaKnown RBP8.51□□□□□ -1.05
COL9A3-208ENST00000469802 GHRHP01286 108 aa8.5□□□□□ -1.05
COL9A3-208ENST00000469802 TEN1Q86WV5 123 aa8.5□□□□□ -1.05
COL9A3-208ENST00000469802 TRIAP1O43715 76 aa8.49□□□□□ -1.05
COL9A3-208ENST00000469802 K7ERJ3 54 aa8.48□□□□□ -1.05
COL9A3-208ENST00000469802 M0R2T5 61 aa8.48□□□□□ -1.05
COL9A3-208ENST00000469802 PSMB2P49721 201 aa8.48□□□□□ -1.05
COL9A3-208ENST00000469802 ATP11AUNQ6ZP68 121 aa8.48□□□□□ -1.05
COL9A3-208ENST00000469802 COX6CP09669 75 aa8.47□□□□□ -1.05
COL9A3-208ENST00000469802 Q96NJ1 140 aa8.47□□□□□ -1.05
COL9A3-208ENST00000469802 C20orf166-AS1Q96NR2 134 aa8.46□□□□□ -1.06
COL9A3-208ENST00000469802 A0A087WSZ3 146 aa8.45□□□□□ -1.06
COL9A3-208ENST00000469802 A8MUU9 505 aa8.44□□□□□ -1.06
COL9A3-208ENST00000469802 H3BMG7 143 aa8.44□□□□□ -1.06
COL9A3-208ENST00000469802 M0R143 59 aa8.43□□□□□ -1.06
COL9A3-208ENST00000469802 DNAL4O96015 105 aa8.43□□□□□ -1.06
COL9A3-208ENST00000469802 A0A1W2PNM2 257 aa8.41□□□□□ -1.06
COL9A3-208ENST00000469802 FABP2P12104 132 aa8.41□□□□□ -1.06
COL9A3-208ENST00000469802 H3BQ85 93 aa8.4□□□□□ -1.06
COL9A3-208ENST00000469802 TSTD3H0UI37 97 aa8.39□□□□□ -1.07
COL9A3-208ENST00000469802 ORMDL1Q9P0S3 153 aa8.38□□□□□ -1.07
COL9A3-208ENST00000469802 SCGB1C2P0DMR2 95 aa8.37□□□□□ -1.07
COL9A3-208ENST00000469802 LOC105371267A0A1B0GV96 52 aa8.36□□□□□ -1.07
COL9A3-208ENST00000469802 DSCR10P59022 87 aa8.35□□□□□ -1.07
COL9A3-208ENST00000469802 TRBV7-4A0A0J9YYF1 115 aa8.34□□□□□ -1.07
COL9A3-208ENST00000469802 TMEM256-PLSCR3K7ERE1 68 aa8.34□□□□□ -1.07
COL9A3-208ENST00000469802 TRACP01848 142 aa8.34□□□□□ -1.07
COL9A3-208ENST00000469802 SIGMAR1Q99720 223 aa8.34□□□□□ -1.07
COL9A3-208ENST00000469802 KRTAP16-1A8MUX0 517 aa8.32□□□□□ -1.08
COL9A3-208ENST00000469802 ANKRD29Q8N6D5 301 aa8.32□□□□□ -1.08
COL9A3-208ENST00000469802 A0A1B0GV72 72 aa8.29□□□□□ -1.08
COL9A3-208ENST00000469802 IGKV4-1P06312 121 aa8.29□□□□□ -1.08
COL9A3-208ENST00000469802 LINC00313P59037 77 aa8.28□□□□□ -1.08
COL9A3-208ENST00000469802 UBE2V1Q13404 147 aa8.28□□□□□ -1.08
COL9A3-208ENST00000469802 LINC00472Q9H8W2 130 aa8.28□□□□□ -1.08
COL9A3-208ENST00000469802 TRBV20-1A0A075B6N2 111 aa8.26□□□□□ -1.09
COL9A3-208ENST00000469802 CCKP06307 115 aa8.26□□□□□ -1.09
COL9A3-208ENST00000469802 ATXN8Q156A1 80 aa8.26□□□□□ -1.09
COL9A3-208ENST00000469802 BATFQ16520 125 aa8.26□□□□□ -1.09
COL9A3-208ENST00000469802 LYRM7Q5U5X0 104 aa8.26□□□□□ -1.09
COL9A3-208ENST00000469802 NOTCH2NLQ7Z3S9 236 aa8.26□□□□□ -1.09
COL9A3-208ENST00000469802 KRTAP9-8Q9BYQ0 159 aa8.25□□□□□ -1.09
COL9A3-208ENST00000469802 NAA38Q9BRA0 125 aaKnown RBP8.24□□□□□ -1.09
COL9A3-208ENST00000469802 DEFB116Q30KQ4 102 aa8.23□□□□□ -1.09
COL9A3-208ENST00000469802 BAALC-AS2P0C853 105 aa8.22□□□□□ -1.09
COL9A3-208ENST00000469802 MPLKIPQ8TAP9 179 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms