RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 VAMP3Q15836 100 aa10.63□□□□□ -0.71
USP40-207ENST00000450940 LINC00575Q6W349 94 aa10.62□□□□□ -0.71
USP40-207ENST00000450940 A0A0G2JQZ4 141 aa10.59□□□□□ -0.71
USP40-207ENST00000450940 COX8AP10176 69 aa10.57□□□□□ -0.72
USP40-207ENST00000450940 C1orf195Q5TG92 126 aa10.57□□□□□ -0.72
USP40-207ENST00000450940 hADV29S1A0JD25 119 aa10.56□□□□□ -0.72
USP40-207ENST00000450940 DLEU1O43261 78 aa10.56□□□□□ -0.72
USP40-207ENST00000450940 TSTD3H0UI37 97 aa10.55□□□□□ -0.72
USP40-207ENST00000450940 HIST1H4GQ99525 98 aa10.55□□□□□ -0.72
USP40-207ENST00000450940 C9orf92A6NGG3 77 aa10.54□□□□□ -0.72
USP40-207ENST00000450940 Q6ZQY7 126 aa10.54□□□□□ -0.72
USP40-207ENST00000450940 KRTAP9-2Q9BYQ4 174 aa10.54□□□□□ -0.72
USP40-207ENST00000450940 IGLV8-61A0A075B6I0 122 aa10.53□□□□□ -0.72
USP40-207ENST00000450940 VAMP8Q9BV40 100 aa10.52□□□□□ -0.73
USP40-207ENST00000450940 F8WEM9 126 aa10.51□□□□□ -0.73
USP40-207ENST00000450940 BVES-AS1Q5T3Y7 98 aa10.5□□□□□ -0.73
USP40-207ENST00000450940 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.5□□□□□ -0.73
USP40-207ENST00000450940 TCL1BO95988 128 aa10.49□□□□□ -0.73
USP40-207ENST00000450940 Q6JHZ5 121 aa10.49□□□□□ -0.73
USP40-207ENST00000450940 PCP4L1A6NKN8 68 aa10.48□□□□□ -0.73
USP40-207ENST00000450940 PCOTHQ58A44 107 aa10.48□□□□□ -0.73
USP40-207ENST00000450940 PPDPFLQ8WWR9 84 aa10.48□□□□□ -0.73
USP40-207ENST00000450940 OCIAD2Q56VL3 154 aa10.47□□□□□ -0.73
USP40-207ENST00000450940 HIGD1BQ9P298 99 aa10.47□□□□□ -0.73
USP40-207ENST00000450940 CFC1BP0CG36 223 aa10.46□□□□□ -0.73
USP40-207ENST00000450940 CFC1P0CG37 223 aa10.46□□□□□ -0.73
USP40-207ENST00000450940 C14orf144Q96I85 54 aa10.46□□□□□ -0.73
USP40-207ENST00000450940 IGFL1Q6UW32 110 aa10.45□□□□□ -0.74
USP40-207ENST00000450940 CLEC2BQ92478 149 aa10.45□□□□□ -0.74
USP40-207ENST00000450940 KRTAP19-2Q3LHN2 52 aa10.43□□□□□ -0.74
USP40-207ENST00000450940 SPATA45Q537H7 98 aa10.43□□□□□ -0.74
USP40-207ENST00000450940 PAM16Q9Y3D7 125 aa10.43□□□□□ -0.74
USP40-207ENST00000450940 TRBV7-7A0A0K0K1E9 115 aa10.42□□□□□ -0.74
USP40-207ENST00000450940 A0A0B4J2C4 111 aa10.41□□□□□ -0.74
USP40-207ENST00000450940 C2orf91Q6ZV80 131 aa10.41□□□□□ -0.74
USP40-207ENST00000450940 H0YGX0 51 aa10.39□□□□□ -0.75
USP40-207ENST00000450940 RPL37P61927 97 aaKnown RBP10.39□□□□□ -0.75
USP40-207ENST00000450940 RAB37Q96AX2 223 aa10.39□□□□□ -0.75
USP40-207ENST00000450940 SNHG12Q9BXW3 62 aa10.39□□□□□ -0.75
USP40-207ENST00000450940 UQCR10Q9UDW1 63 aa10.39□□□□□ -0.75
USP40-207ENST00000450940 SNCGO76070 127 aa10.34□□□□□ -0.75
USP40-207ENST00000450940 CEND1Q8N111 149 aa10.34□□□□□ -0.75
USP40-207ENST00000450940 FAM218AQ96MZ4 157 aa10.34□□□□□ -0.75
USP40-207ENST00000450940 H3BUT2 72 aa10.33□□□□□ -0.76
USP40-207ENST00000450940 Q6Q795 121 aa10.32□□□□□ -0.76
USP40-207ENST00000450940 PRO1854Q9UHT4 67 aa10.31□□□□□ -0.76
USP40-207ENST00000450940 A0A1B0GX51 115 aa10.3□□□□□ -0.76
USP40-207ENST00000450940 TMEM238LA0A1B0GVL6 79 aa10.29□□□□□ -0.76
USP40-207ENST00000450940 NDUFV3P56181 108 aaKnown RBP10.29□□□□□ -0.76
USP40-207ENST00000450940 MT1HP80294 61 aa10.28□□□□□ -0.76
USP40-207ENST00000450940 LST1O00453 97 aa10.27□□□□□ -0.77
USP40-207ENST00000450940 FXYD2P54710 66 aa10.27□□□□□ -0.77
USP40-207ENST00000450940 M0R143 59 aa10.26□□□□□ -0.77
USP40-207ENST00000450940 TEN1Q86WV5 123 aa10.26□□□□□ -0.77
USP40-207ENST00000450940 GHRHP01286 108 aa10.25□□□□□ -0.77
USP40-207ENST00000450940 SS18L2Q9UHA2 77 aa10.25□□□□□ -0.77
USP40-207ENST00000450940 OBSCN-AS1Q96MR7 158 aa10.23□□□□□ -0.77
USP40-207ENST00000450940 TRIAP1O43715 76 aa10.22□□□□□ -0.77
USP40-207ENST00000450940 Q75L30 129 aa10.22□□□□□ -0.77
USP40-207ENST00000450940 H3BMG7 143 aa10.21□□□□□ -0.77
USP40-207ENST00000450940 FABP2P12104 132 aa10.19□□□□□ -0.78
USP40-207ENST00000450940 HSD52Q0P140 79 aa10.19□□□□□ -0.78
USP40-207ENST00000450940 KRTAP9-6A0A140TA67 174 aa10.18□□□□□ -0.78
USP40-207ENST00000450940 A0A087WSZ3 146 aa10.16□□□□□ -0.78
USP40-207ENST00000450940 Q96NJ1 140 aa10.16□□□□□ -0.78
USP40-207ENST00000450940 ATP11AUNQ6ZP68 121 aa10.15□□□□□ -0.78
USP40-207ENST00000450940 A0A1W2PNM2 257 aa10.14□□□□□ -0.79
USP40-207ENST00000450940 H3BQ85 93 aa10.14□□□□□ -0.79
USP40-207ENST00000450940 COL5A1-AS1Q5SY13 56 aa10.14□□□□□ -0.79
USP40-207ENST00000450940 FLGP20930 4061 aaPredicted RBP10.13□□□□□ -0.79
USP40-207ENST00000450940 K7ERJ3 54 aa10.12□□□□□ -0.79
USP40-207ENST00000450940 C20orf166-AS1Q96NR2 134 aa10.12□□□□□ -0.79
USP40-207ENST00000450940 ORMDL1Q9P0S3 153 aa10.12□□□□□ -0.79
USP40-207ENST00000450940 DNAL4O96015 105 aa10.11□□□□□ -0.79
USP40-207ENST00000450940 PSMB2P49721 201 aa10.11□□□□□ -0.79
USP40-207ENST00000450940 A8MUU9 505 aa10.1□□□□□ -0.79
USP40-207ENST00000450940 COX6B2Q6YFQ2 88 aa10.1□□□□□ -0.79
USP40-207ENST00000450940 COX6CP09669 75 aa10.09□□□□□ -0.79
USP40-207ENST00000450940 KRTAP10-6P60371 365 aaPredicted RBP10.09□□□□□ -0.79
USP40-207ENST00000450940 BATFQ16520 125 aa10.09□□□□□ -0.79
USP40-207ENST00000450940 TRBV7-4A0A0J9YYF1 115 aa10.08□□□□□ -0.8
USP40-207ENST00000450940 TMEM256-PLSCR3K7ERE1 68 aa10.08□□□□□ -0.8
USP40-207ENST00000450940 ANKRD29Q8N6D5 301 aa10.08□□□□□ -0.8
USP40-207ENST00000450940 UBE2V1Q13404 147 aa10.03□□□□□ -0.8
USP40-207ENST00000450940 M0R2T5 61 aa10.02□□□□□ -0.81
USP40-207ENST00000450940 TRACP01848 142 aa10.02□□□□□ -0.81
USP40-207ENST00000450940 DSCR10P59022 87 aa10.01□□□□□ -0.81
USP40-207ENST00000450940 A0A1B0GV72 72 aa9.99□□□□□ -0.81
USP40-207ENST00000450940 SIGMAR1Q99720 223 aa9.99□□□□□ -0.81
USP40-207ENST00000450940 LINC00472Q9H8W2 130 aa9.99□□□□□ -0.81
USP40-207ENST00000450940 CCKP06307 115 aa9.98□□□□□ -0.81
USP40-207ENST00000450940 IGKV4-1P06312 121 aa9.98□□□□□ -0.81
USP40-207ENST00000450940 KRTAP16-1A8MUX0 517 aa9.97□□□□□ -0.81
USP40-207ENST00000450940 LINC00313P59037 77 aa9.97□□□□□ -0.81
USP40-207ENST00000450940 FSIP2Q5CZC0 6907 aa9.97□□□□□ -0.81
USP40-207ENST00000450940 A0A1B0GV90 55 aa9.95□□□□□ -0.82
USP40-207ENST00000450940 CRCT1Q9UGL9 99 aa9.95□□□□□ -0.82
USP40-207ENST00000450940 SCGB1C2P0DMR2 95 aa9.94□□□□□ -0.82
USP40-207ENST00000450940 TAX1BP3O14907 124 aa9.93□□□□□ -0.82
USP40-207ENST00000450940 RBM3P98179 157 aaKnown RBP9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms