RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 SLC7A5P1Q8MH63 180 aa7.01□□□□□ -1.29
HMGB3-204ENST00000448905 SMIM11BQ8TCY0 68 aa7□□□□□ -1.29
HMGB3-204ENST00000448905 hADV29S1A0JD25 119 aa6.96□□□□□ -1.3
HMGB3-204ENST00000448905 OCIAD2Q56VL3 154 aa6.96□□□□□ -1.3
HMGB3-204ENST00000448905 LINC00575Q6W349 94 aa6.96□□□□□ -1.3
HMGB3-204ENST00000448905 CLEC2BQ92478 149 aa6.96□□□□□ -1.3
HMGB3-204ENST00000448905 OBSCN-AS1Q96MR7 158 aa6.96□□□□□ -1.3
HMGB3-204ENST00000448905 TRBV7-7A0A0K0K1E9 115 aa6.95□□□□□ -1.3
HMGB3-204ENST00000448905 SNRPEP62304 92 aaKnown RBP6.95□□□□□ -1.3
HMGB3-204ENST00000448905 ANKRD39Q53RE8 183 aa6.95□□□□□ -1.3
HMGB3-204ENST00000448905 Q75L30 129 aa6.95□□□□□ -1.3
HMGB3-204ENST00000448905 Q6ZQY7 126 aa6.94□□□□□ -1.3
HMGB3-204ENST00000448905 LST1O00453 97 aa6.93□□□□□ -1.3
HMGB3-204ENST00000448905 ATOH7Q8N100 152 aa6.93□□□□□ -1.3
HMGB3-204ENST00000448905 SNHG12Q9BXW3 62 aa6.93□□□□□ -1.3
HMGB3-204ENST00000448905 COA6Q5JTJ3 125 aaKnown RBP6.92□□□□□ -1.3
HMGB3-204ENST00000448905 IGFL1Q6UW32 110 aa6.92□□□□□ -1.3
HMGB3-204ENST00000448905 SCGB1D1O95968 90 aa6.91□□□□□ -1.3
HMGB3-204ENST00000448905 PPDPFLQ8WWR9 84 aa6.91□□□□□ -1.3
HMGB3-204ENST00000448905 Q96NJ1 140 aa6.91□□□□□ -1.3
HMGB3-204ENST00000448905 FLGP20930 4061 aaPredicted RBP6.91□□□□□ -1.3
HMGB3-204ENST00000448905 TRBV20-1A0A075B6N2 111 aa6.9□□□□□ -1.3
HMGB3-204ENST00000448905 CFC1P0CG37 223 aa6.9□□□□□ -1.3
HMGB3-204ENST00000448905 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.9□□□□□ -1.3
HMGB3-204ENST00000448905 SNCGO76070 127 aa6.89□□□□□ -1.31
HMGB3-204ENST00000448905 BVES-AS1Q5T3Y7 98 aa6.88□□□□□ -1.31
HMGB3-204ENST00000448905 SS18L2Q9UHA2 77 aa6.88□□□□□ -1.31
HMGB3-204ENST00000448905 KRTAP9-7A8MTY7 169 aa6.87□□□□□ -1.31
HMGB3-204ENST00000448905 HSBP1L1C9JCN9 74 aa6.87□□□□□ -1.31
HMGB3-204ENST00000448905 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.86□□□□□ -1.31
HMGB3-204ENST00000448905 C12orf57Q99622 126 aa6.86□□□□□ -1.31
HMGB3-204ENST00000448905 C20orf166-AS1Q96NR2 134 aa6.82□□□□□ -1.32
HMGB3-204ENST00000448905 H3BUT2 72 aa6.81□□□□□ -1.32
HMGB3-204ENST00000448905 GHRHP01286 108 aa6.81□□□□□ -1.32
HMGB3-204ENST00000448905 TEN1Q86WV5 123 aa6.81□□□□□ -1.32
HMGB3-204ENST00000448905 A8MUU9 505 aa6.8□□□□□ -1.32
HMGB3-204ENST00000448905 HIST1H4GQ99525 98 aa6.8□□□□□ -1.32
HMGB3-204ENST00000448905 S100A2P29034 98 aa6.79□□□□□ -1.32
HMGB3-204ENST00000448905 H0YGX0 51 aa6.78□□□□□ -1.32
HMGB3-204ENST00000448905 KRTAP9-8Q9BYQ0 159 aa6.78□□□□□ -1.32
HMGB3-204ENST00000448905 SSPOA2VEC9 5147 aa6.77□□□□□ -1.33
HMGB3-204ENST00000448905 NDUFV3P56181 108 aaKnown RBP6.77□□□□□ -1.33
HMGB3-204ENST00000448905 USH2AO75445 5202 aa6.75□□□□□ -1.33
HMGB3-204ENST00000448905 A0A087WSZ3 146 aa6.75□□□□□ -1.33
HMGB3-204ENST00000448905 FAM236DA0A1B0GTK5 79 aa6.75□□□□□ -1.33
HMGB3-204ENST00000448905 FAM236CP0DP71 79 aa6.75□□□□□ -1.33
HMGB3-204ENST00000448905 RAB37Q96AX2 223 aa6.75□□□□□ -1.33
HMGB3-204ENST00000448905 H3BMG7 143 aa6.74□□□□□ -1.33
HMGB3-204ENST00000448905 LINC00313P59037 77 aa6.73□□□□□ -1.33
HMGB3-204ENST00000448905 HIST1H2BLQ99880 126 aa6.73□□□□□ -1.33
HMGB3-204ENST00000448905 RBM12B-AS1Q9P1G2 102 aa6.73□□□□□ -1.33
HMGB3-204ENST00000448905 FABP2P12104 132 aa6.72□□□□□ -1.33
HMGB3-204ENST00000448905 DSCR10P59022 87 aa6.72□□□□□ -1.33
HMGB3-204ENST00000448905 HIST3H2BBQ8N257 126 aa6.71□□□□□ -1.34
HMGB3-204ENST00000448905 SIGMAR1Q99720 223 aa6.7□□□□□ -1.34
HMGB3-204ENST00000448905 A0A1B0GX51 115 aa6.69□□□□□ -1.34
HMGB3-204ENST00000448905 S100A6P06703 90 aa6.69□□□□□ -1.34
HMGB3-204ENST00000448905 COX8AP10176 69 aa6.69□□□□□ -1.34
HMGB3-204ENST00000448905 DLEU1O43261 78 aa6.67□□□□□ -1.34
HMGB3-204ENST00000448905 IGKV4-1P06312 121 aa6.67□□□□□ -1.34
HMGB3-204ENST00000448905 KRTAP10-10P60014 251 aa6.66□□□□□ -1.34
HMGB3-204ENST00000448905 MTURNQ8N3F0 131 aa6.66□□□□□ -1.34
HMGB3-204ENST00000448905 ANKRD29Q8N6D5 301 aa6.66□□□□□ -1.34
HMGB3-204ENST00000448905 A0A0B4J2C4 111 aa6.65□□□□□ -1.34
HMGB3-204ENST00000448905 H3BQ85 93 aa6.65□□□□□ -1.34
HMGB3-204ENST00000448905 MT2AP02795 61 aa6.65□□□□□ -1.34
HMGB3-204ENST00000448905 FAM218AQ96MZ4 157 aa6.65□□□□□ -1.34
HMGB3-204ENST00000448905 FCGBPQ9Y6R7 5405 aaPredicted RBP6.64□□□□□ -1.35
HMGB3-204ENST00000448905 TRBV7-4A0A0J9YYF1 115 aa6.64□□□□□ -1.35
HMGB3-204ENST00000448905 A0A1W2PNM2 257 aa6.63□□□□□ -1.35
HMGB3-204ENST00000448905 KRTAP16-1A8MUX0 517 aa6.63□□□□□ -1.35
HMGB3-204ENST00000448905 LINC00846Q9NV44 126 aa6.63□□□□□ -1.35
HMGB3-204ENST00000448905 PRO1854Q9UHT4 67 aa6.63□□□□□ -1.35
HMGB3-204ENST00000448905 TMEM238LA0A1B0GVL6 79 aa6.62□□□□□ -1.35
HMGB3-204ENST00000448905 A6NJY4 79 aa6.62□□□□□ -1.35
HMGB3-204ENST00000448905 KRTAP19-1Q8IUB9 90 aa6.62□□□□□ -1.35
HMGB3-204ENST00000448905 HIGD1BQ9P298 99 aa6.62□□□□□ -1.35
HMGB3-204ENST00000448905 DNAL4O96015 105 aa6.61□□□□□ -1.35
HMGB3-204ENST00000448905 C14orf144Q96I85 54 aa6.61□□□□□ -1.35
HMGB3-204ENST00000448905 MPLKIPQ8TAP9 179 aa6.6□□□□□ -1.35
HMGB3-204ENST00000448905 IGHV6-1A0A0B4J1U7 121 aa6.59□□□□□ -1.35
HMGB3-204ENST00000448905 TMEM256-PLSCR3K7ERE1 68 aa6.59□□□□□ -1.35
HMGB3-204ENST00000448905 LCE2BO14633 110 aa6.59□□□□□ -1.35
HMGB3-204ENST00000448905 HRES1P13985 223 aa6.59□□□□□ -1.35
HMGB3-204ENST00000448905 MT1FP04733 61 aa6.58□□□□□ -1.36
HMGB3-204ENST00000448905 S100A1P23297 94 aa6.58□□□□□ -1.36
HMGB3-204ENST00000448905 DEFB116Q30KQ4 102 aa6.58□□□□□ -1.36
HMGB3-204ENST00000448905 NOTCH2NLQ7Z3S9 236 aa6.58□□□□□ -1.36
HMGB3-204ENST00000448905 KRTAP9-3Q9BYQ3 159 aa6.58□□□□□ -1.36
HMGB3-204ENST00000448905 ORMDL1Q9P0S3 153 aa6.58□□□□□ -1.36
HMGB3-204ENST00000448905 TRACP01848 142 aa6.57□□□□□ -1.36
HMGB3-204ENST00000448905 CEND1Q8N111 149 aa6.57□□□□□ -1.36
HMGB3-204ENST00000448905 CCKP06307 115 aa6.56□□□□□ -1.36
HMGB3-204ENST00000448905 LINC00472Q9H8W2 130 aa6.56□□□□□ -1.36
HMGB3-204ENST00000448905 C8orf87E5RJ46 101 aa6.55□□□□□ -1.36
HMGB3-204ENST00000448905 COX6CP09669 75 aa6.55□□□□□ -1.36
HMGB3-204ENST00000448905 SPATA45Q537H7 98 aa6.55□□□□□ -1.36
HMGB3-204ENST00000448905 PAM16Q9Y3D7 125 aa6.55□□□□□ -1.36
HMGB3-204ENST00000448905 A0A1B0GV72 72 aa6.54□□□□□ -1.36
HMGB3-204ENST00000448905 TRIAP1O43715 76 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 280 ms