RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 LINC00575Q6W349 94 aa3.64□□□□□ -1.83
USP54-202ENST00000413442 Q8N377 158 aa3.64□□□□□ -1.83
USP54-202ENST00000413442 A0A0B4J2C4 111 aa3.63□□□□□ -1.83
USP54-202ENST00000413442 H7C2G1 150 aa3.63□□□□□ -1.83
USP54-202ENST00000413442 SPATA45Q537H7 98 aa3.63□□□□□ -1.83
USP54-202ENST00000413442 Q6JHZ5 121 aa3.63□□□□□ -1.83
USP54-202ENST00000413442 ST20-AS1Q8NBB2 130 aa3.63□□□□□ -1.83
USP54-202ENST00000413442 UBR4Q5T4S7 5183 aa3.63□□□□□ -1.83
USP54-202ENST00000413442 F8WEM9 126 aa3.62□□□□□ -1.83
USP54-202ENST00000413442 TCL1BO95988 128 aa3.62□□□□□ -1.83
USP54-202ENST00000413442 RAB37Q96AX2 223 aa3.62□□□□□ -1.83
USP54-202ENST00000413442 KRTAP9-9Q9BYP9 154 aa3.62□□□□□ -1.83
USP54-202ENST00000413442 KRTAP9-4Q9BYQ2 154 aa3.62□□□□□ -1.83
USP54-202ENST00000413442 IGLV8-61A0A075B6I0 122 aa3.61□□□□□ -1.83
USP54-202ENST00000413442 CFC1BP0CG36 223 aa3.61□□□□□ -1.83
USP54-202ENST00000413442 CFC1P0CG37 223 aa3.61□□□□□ -1.83
USP54-202ENST00000413442 LINC01547P58512 204 aaPredicted RBP3.61□□□□□ -1.83
USP54-202ENST00000413442 SEC61BP60468 96 aaKnown RBP3.61□□□□□ -1.83
USP54-202ENST00000413442 SMIM29Q86T20 159 aa3.61□□□□□ -1.83
USP54-202ENST00000413442 DEFB105AQ8NG35 78 aa3.61□□□□□ -1.83
USP54-202ENST00000413442 C14orf144Q96I85 54 aa3.61□□□□□ -1.83
USP54-202ENST00000413442 C12orf57Q99622 126 aa3.61□□□□□ -1.83
USP54-202ENST00000413442 PRO1854Q9UHT4 67 aa3.61□□□□□ -1.83
USP54-202ENST00000413442 PAM16Q9Y3D7 125 aa3.61□□□□□ -1.83
USP54-202ENST00000413442 KRTAP13-3Q3SY46 172 aa3.6□□□□□ -1.83
USP54-202ENST00000413442 ASB16-AS1Q495Z4 193 aa3.6□□□□□ -1.83
USP54-202ENST00000413442 CEND1Q8N111 149 aa3.6□□□□□ -1.83
USP54-202ENST00000413442 RETNLBQ9BQ08 111 aa3.6□□□□□ -1.83
USP54-202ENST00000413442 SNHG12Q9BXW3 62 aa3.6□□□□□ -1.83
USP54-202ENST00000413442 LRP2P98164 4655 aa3.59□□□□□ -1.83
USP54-202ENST00000413442 COX6CP09669 75 aa3.59□□□□□ -1.83
USP54-202ENST00000413442 Q1RN00 199 aa3.59□□□□□ -1.83
USP54-202ENST00000413442 Q6ZQY7 126 aa3.59□□□□□ -1.83
USP54-202ENST00000413442 HSD52Q0P140 79 aa3.58□□□□□ -1.84
USP54-202ENST00000413442 KRTAP19-1Q8IUB9 90 aa3.58□□□□□ -1.84
USP54-202ENST00000413442 PYY3Q5JQD4 70 aa3.57□□□□□ -1.84
USP54-202ENST00000413442 Q6Q795 121 aa3.57□□□□□ -1.84
USP54-202ENST00000413442 C2orf91Q6ZV80 131 aa3.57□□□□□ -1.84
USP54-202ENST00000413442 CLEC2BQ92478 149 aa3.57□□□□□ -1.84
USP54-202ENST00000413442 UQCR10Q9UDW1 63 aa3.57□□□□□ -1.84
USP54-202ENST00000413442 KRTAP4-8A0A0G2JLE6 195 aa3.56□□□□□ -1.84
USP54-202ENST00000413442 SS18L2Q9UHA2 77 aa3.56□□□□□ -1.84
USP54-202ENST00000413442 RNF213Q63HN8 5207 aa3.55□□□□□ -1.84
USP54-202ENST00000413442 TMEM256-PLSCR3K7ERE1 68 aa3.55□□□□□ -1.84
USP54-202ENST00000413442 C21orf62-AS1Q17RA5 79 aa3.55□□□□□ -1.84
USP54-202ENST00000413442 TEN1Q86WV5 123 aa3.55□□□□□ -1.84
USP54-202ENST00000413442 TRBV7-7A0A0K0K1E9 115 aa3.54□□□□□ -1.84
USP54-202ENST00000413442 LOC105371267A0A1B0GV96 52 aa3.54□□□□□ -1.84
USP54-202ENST00000413442 DNAL4O96015 105 aa3.54□□□□□ -1.84
USP54-202ENST00000413442 NDUFV3P56181 108 aaKnown RBP3.54□□□□□ -1.84
USP54-202ENST00000413442 C1orf195Q5TG92 126 aa3.54□□□□□ -1.84
USP54-202ENST00000413442 HRCT1Q6UXD1 115 aa3.54□□□□□ -1.84
USP54-202ENST00000413442 PSMB2P49721 201 aa3.53□□□□□ -1.84
USP54-202ENST00000413442 IGFL1Q6UW32 110 aa3.53□□□□□ -1.84
USP54-202ENST00000413442 LPAP08519 4548 aa3.52□□□□□ -1.85
USP54-202ENST00000413442 LST1O00453 97 aa3.52□□□□□ -1.85
USP54-202ENST00000413442 FXYD2P54710 66 aa3.52□□□□□ -1.85
USP54-202ENST00000413442 ORMDL1Q9P0S3 153 aa3.52□□□□□ -1.85
USP54-202ENST00000413442 TMA7Q9Y2S6 64 aaKnown RBP3.52□□□□□ -1.85
USP54-202ENST00000413442 H3BMG7 143 aa3.51□□□□□ -1.85
USP54-202ENST00000413442 M0R143 59 aa3.51□□□□□ -1.85
USP54-202ENST00000413442 TRACP01848 142 aa3.51□□□□□ -1.85
USP54-202ENST00000413442 UBE2V1Q13404 147 aa3.51□□□□□ -1.85
USP54-202ENST00000413442 TRBV7-4A0A0J9YYF1 115 aa3.5□□□□□ -1.85
USP54-202ENST00000413442 A0A1B0GW54 56 aa3.5□□□□□ -1.85
USP54-202ENST00000413442 TRIAP1O43715 76 aa3.5□□□□□ -1.85
USP54-202ENST00000413442 FABP2P12104 132 aa3.5□□□□□ -1.85
USP54-202ENST00000413442 SMIM6P0DI80 62 aa3.49□□□□□ -1.85
USP54-202ENST00000413442 SCGB1C2P0DMR2 95 aa3.49□□□□□ -1.85
USP54-202ENST00000413442 ANKRD29Q8N6D5 301 aa3.49□□□□□ -1.85
USP54-202ENST00000413442 FAM218AQ96MZ4 157 aa3.49□□□□□ -1.85
USP54-202ENST00000413442 LYRM7Q5U5X0 104 aa3.48□□□□□ -1.85
USP54-202ENST00000413442 TSTD3H0UI37 97 aa3.47□□□□□ -1.85
USP54-202ENST00000413442 JMJD7-PLA2G4BH0Y9G9 81 aa3.47□□□□□ -1.85
USP54-202ENST00000413442 PDE6GP18545 87 aa3.47□□□□□ -1.85
USP54-202ENST00000413442 RPL37P61927 97 aaKnown RBP3.47□□□□□ -1.85
USP54-202ENST00000413442 TRBV20-1A0A075B6N2 111 aa3.46□□□□□ -1.86
USP54-202ENST00000413442 A0A0G2JQZ4 141 aa3.46□□□□□ -1.86
USP54-202ENST00000413442 RBM3P98179 157 aaKnown RBP3.46□□□□□ -1.86
USP54-202ENST00000413442 ATP11AUNQ6ZP68 121 aa3.46□□□□□ -1.86
USP54-202ENST00000413442 DSCR8Q96T75 97 aa3.46□□□□□ -1.86
USP54-202ENST00000413442 C9orf92A6NGG3 77 aa3.45□□□□□ -1.86
USP54-202ENST00000413442 H3BUT2 72 aa3.45□□□□□ -1.86
USP54-202ENST00000413442 ATXN8Q156A1 80 aa3.45□□□□□ -1.86
USP54-202ENST00000413442 LCE1DQ5T752 114 aa3.45□□□□□ -1.86
USP54-202ENST00000413442 Q75L30 129 aa3.45□□□□□ -1.86
USP54-202ENST00000413442 KRTAP4-7Q9BYR0 210 aa3.45□□□□□ -1.86
USP54-202ENST00000413442 A0A087WSZ3 146 aa3.44□□□□□ -1.86
USP54-202ENST00000413442 J3KT08 172 aa3.44□□□□□ -1.86
USP54-202ENST00000413442 BAALC-AS2P0C853 105 aa3.44□□□□□ -1.86
USP54-202ENST00000413442 PCOTHQ58A44 107 aa3.44□□□□□ -1.86
USP54-202ENST00000413442 MUC2Q02817 5179 aa3.43□□□□□ -1.86
USP54-202ENST00000413442 MUC17Q685J3 4493 aa3.43□□□□□ -1.86
USP54-202ENST00000413442 A0A1W2PNM2 257 aa3.43□□□□□ -1.86
USP54-202ENST00000413442 C9JAW5 83 aa3.43□□□□□ -1.86
USP54-202ENST00000413442 K7ERJ3 54 aa3.43□□□□□ -1.86
USP54-202ENST00000413442 CCKP06307 115 aa3.43□□□□□ -1.86
USP54-202ENST00000413442 LINC00313P59037 77 aa3.42□□□□□ -1.86
USP54-202ENST00000413442 OBSCN-AS1Q96MR7 158 aa3.41□□□□□ -1.86
USP54-202ENST00000413442 Q96NJ1 140 aa3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 163.3 ms