RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 RETNLBQ9BQ08 111 aa5.73□□□□□ -1.49
LIG4-202ENST00000405925 HCG22E2RYF7 251 aa5.73□□□□□ -1.49
LIG4-202ENST00000405925 LINC00208Q96KT6 92 aa5.72□□□□□ -1.49
LIG4-202ENST00000405925 PRR4Q16378 134 aa5.72□□□□□ -1.49
LIG4-202ENST00000405925 PKD1L1Q8TDX9 2849 aa5.72□□□□□ -1.49
LIG4-202ENST00000405925 COX7CP15954 63 aa5.72□□□□□ -1.49
LIG4-202ENST00000405925 SPRR4Q96PI1 79 aa5.72□□□□□ -1.49
LIG4-202ENST00000405925 TRAV7A0A075B6U4 112 aa5.7□□□□□ -1.5
LIG4-202ENST00000405925 Q6ZR54 194 aa5.7□□□□□ -1.5
LIG4-202ENST00000405925 TRBV7-7A0A0K0K1E9 115 aa5.69□□□□□ -1.5
LIG4-202ENST00000405925 KRTAP10-2P60368 255 aa5.69□□□□□ -1.5
LIG4-202ENST00000405925 SSBP3-AS1Q7Z2R9 100 aa5.69□□□□□ -1.5
LIG4-202ENST00000405925 CCDC179H3BU77 68 aa5.69□□□□□ -1.5
LIG4-202ENST00000405925 SMIM29Q86T20 159 aa5.68□□□□□ -1.5
LIG4-202ENST00000405925 PLAC8Q9NZF1 115 aa5.68□□□□□ -1.5
LIG4-202ENST00000405925 TMEM258P61165 79 aa5.68□□□□□ -1.5
LIG4-202ENST00000405925 LINC00304Q8N9R0 145 aa5.67□□□□□ -1.5
LIG4-202ENST00000405925 hDV103S1A0JD37 113 aa5.67□□□□□ -1.5
LIG4-202ENST00000405925 FAM236DA0A1B0GTK5 79 aa5.66□□□□□ -1.5
LIG4-202ENST00000405925 FAM236CP0DP71 79 aa5.66□□□□□ -1.5
LIG4-202ENST00000405925 DMBT1Q9UGM3 2413 aaPredicted RBP5.66□□□□□ -1.5
LIG4-202ENST00000405925 A0A1W2PNM2 257 aa5.66□□□□□ -1.5
LIG4-202ENST00000405925 J3QL48 77 aa5.66□□□□□ -1.5
LIG4-202ENST00000405925 H0Y9P7 68 aa5.65□□□□□ -1.5
LIG4-202ENST00000405925 KRTAP10-1P60331 282 aa5.65□□□□□ -1.5
LIG4-202ENST00000405925 SPRR1AP35321 89 aa5.65□□□□□ -1.5
LIG4-202ENST00000405925 PANO1I0J062 215 aa5.65□□□□□ -1.51
LIG4-202ENST00000405925 PCOTHQ58A44 107 aa5.65□□□□□ -1.51
LIG4-202ENST00000405925 CUBNO60494 3623 aa5.65□□□□□ -1.51
LIG4-202ENST00000405925 TENM2Q9NT68 2774 aa5.65□□□□□ -1.51
LIG4-202ENST00000405925 K7EQZ3 153 aa5.64□□□□□ -1.51
LIG4-202ENST00000405925 NDUFC1O43677 76 aa5.64□□□□□ -1.51
LIG4-202ENST00000405925 IGLV5-48A0A075B6I7 105 aa5.63□□□□□ -1.51
LIG4-202ENST00000405925 LINC00313P59037 77 aa5.63□□□□□ -1.51
LIG4-202ENST00000405925 TMEM254Q8TBM7 123 aa5.63□□□□□ -1.51
LIG4-202ENST00000405925 IGKV2D-30A0A075B6S6 120 aa5.63□□□□□ -1.51
LIG4-202ENST00000405925 IGKV2-30P06310 120 aa5.63□□□□□ -1.51
LIG4-202ENST00000405925 Q6ZRN7 208 aaPredicted RBP5.63□□□□□ -1.51
LIG4-202ENST00000405925 A8MWP4 228 aa5.62□□□□□ -1.51
LIG4-202ENST00000405925 TGP01266 2768 aa5.62□□□□□ -1.51
LIG4-202ENST00000405925 C5orf47Q569G3 176 aa5.61□□□□□ -1.51
LIG4-202ENST00000405925 SPAG11AQ6PDA7 123 aa5.61□□□□□ -1.51
LIG4-202ENST00000405925 PRR26Q8N8Z3 221 aa5.6□□□□□ -1.51
LIG4-202ENST00000405925 Q96NJ1 140 aa5.59□□□□□ -1.51
LIG4-202ENST00000405925 C1orf64Q8NEQ6 169 aa5.59□□□□□ -1.51
LIG4-202ENST00000405925 FLG2Q5D862 2391 aaPredicted RBP5.59□□□□□ -1.51
LIG4-202ENST00000405925 PRR15Q8IV56 129 aa5.58□□□□□ -1.52
LIG4-202ENST00000405925 TP53AIP1Q9HCN2 124 aa5.58□□□□□ -1.52
LIG4-202ENST00000405925 DSCR10P59022 87 aa5.57□□□□□ -1.52
LIG4-202ENST00000405925 OBSCN-AS1Q96MR7 158 aa5.57□□□□□ -1.52
LIG4-202ENST00000405925 C8orf87E5RJ46 101 aa5.56□□□□□ -1.52
LIG4-202ENST00000405925 TRAV22A0A0B4J277 110 aa5.56□□□□□ -1.52
LIG4-202ENST00000405925 SEC61GP60059 68 aa5.56□□□□□ -1.52
LIG4-202ENST00000405925 MRPL34Q9BQ48 92 aaKnown RBP5.56□□□□□ -1.52
LIG4-202ENST00000405925 A0A1B0GVX0 72 aa5.55□□□□□ -1.52
LIG4-202ENST00000405925 SPINK1P00995 79 aa5.55□□□□□ -1.52
LIG4-202ENST00000405925 C8orf17Q9NRJ1 99 aa5.55□□□□□ -1.52
LIG4-202ENST00000405925 ATP5EP56381 51 aaPredicted RBP5.55□□□□□ -1.52
LIG4-202ENST00000405925 MPLKIPQ8TAP9 179 aa5.55□□□□□ -1.52
LIG4-202ENST00000405925 C9orf92A6NGG3 77 aa5.55□□□□□ -1.52
LIG4-202ENST00000405925 LINC01600Q96MT4 127 aa5.55□□□□□ -1.52
LIG4-202ENST00000405925 ANK3Q12955 4377 aaKnown RBP5.54□□□□□ -1.52
LIG4-202ENST00000405925 FAM229BQ4G0N7 80 aa5.53□□□□□ -1.52
LIG4-202ENST00000405925 KRTAP4-16G5E9R7 235 aaPredicted RBP5.52□□□□□ -1.53
LIG4-202ENST00000405925 SPRR1BP22528 89 aa5.52□□□□□ -1.53
LIG4-202ENST00000405925 Q5VSD8 79 aa5.51□□□□□ -1.53
LIG4-202ENST00000405925 ATP11AUNQ6ZP68 121 aa5.51□□□□□ -1.53
LIG4-202ENST00000405925 TRRAPQ9Y4A5 3859 aa5.51□□□□□ -1.53
LIG4-202ENST00000405925 KRTAP11-1Q8IUC1 163 aa5.5□□□□□ -1.53
LIG4-202ENST00000405925 KRTAP7-1Q8IUC3 87 aa5.5□□□□□ -1.53
LIG4-202ENST00000405925 CD164Q04900 197 aa5.49□□□□□ -1.53
LIG4-202ENST00000405925 H3BPC8 53 aa5.46□□□□□ -1.54
LIG4-202ENST00000405925 IGLV8-61A0A075B6I0 122 aa5.46□□□□□ -1.54
LIG4-202ENST00000405925 C7orf65Q6ZTY9 151 aa5.45□□□□□ -1.54
LIG4-202ENST00000405925 SPTSSBQ8NFR3 76 aa5.45□□□□□ -1.54
LIG4-202ENST00000405925 LOC101927531A0A1B0GV80 90 aa5.44□□□□□ -1.54
LIG4-202ENST00000405925 SERP1Q9Y6X1 66 aa5.44□□□□□ -1.54
LIG4-202ENST00000405925 IGLV7-46A0A075B6I9 117 aa5.42□□□□□ -1.54
LIG4-202ENST00000405925 A0A087X002 238 aa5.42□□□□□ -1.54
LIG4-202ENST00000405925 V9GYY9 64 aa5.42□□□□□ -1.54
LIG4-202ENST00000405925 SMIM26A0A096LP01 95 aa5.41□□□□□ -1.54
LIG4-202ENST00000405925 LINC00483Q53H64 154 aa5.41□□□□□ -1.54
LIG4-202ENST00000405925 PRR15LQ9BU68 103 aa5.41□□□□□ -1.54
LIG4-202ENST00000405925 FBN3Q75N90 2809 aa5.4□□□□□ -1.54
LIG4-202ENST00000405925 LINC00472Q9H8W2 130 aa5.39□□□□□ -1.55
LIG4-202ENST00000405925 BRK1Q8WUW1 75 aa5.39□□□□□ -1.55
LIG4-202ENST00000405925 VPS13CQ709C8 3753 aa5.39□□□□□ -1.55
LIG4-202ENST00000405925 ZNF469Q96JG9 3925 aaPredicted RBP5.38□□□□□ -1.55
LIG4-202ENST00000405925 ACYP2P14621 99 aa5.38□□□□□ -1.55
LIG4-202ENST00000405925 SVIPQ8NHG7 77 aa5.38□□□□□ -1.55
LIG4-202ENST00000405925 A6NED7 52 aa5.37□□□□□ -1.55
LIG4-202ENST00000405925 MMP24-AS1A0A0U1RRL7 71 aa5.36□□□□□ -1.55
LIG4-202ENST00000405925 C1orf195Q5TG92 126 aa5.36□□□□□ -1.55
LIG4-202ENST00000405925 KLKP1Q107X0 134 aa5.36□□□□□ -1.55
LIG4-202ENST00000405925 KRTAP13-1Q8IUC0 172 aa5.35□□□□□ -1.55
LIG4-202ENST00000405925 COX6B2Q6YFQ2 88 aa5.35□□□□□ -1.55
LIG4-202ENST00000405925 OCR1Q9BZK8 76 aa5.35□□□□□ -1.55
LIG4-202ENST00000405925 PSPHP1O15172 72 aa5.34□□□□□ -1.55
LIG4-202ENST00000405925 Q6ZSA8 131 aa5.32□□□□□ -1.56
LIG4-202ENST00000405925 K7ERS5 55 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 80.6 ms