RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 ATP5EP56381 51 aaPredicted RBP13.26□□□□□ -0.29
CTCF-202ENST00000401394 A0A096LNI7 61 aa13.26□□□□□ -0.29
CTCF-202ENST00000401394 SPRR4Q96PI1 79 aa13.26□□□□□ -0.29
CTCF-202ENST00000401394 KRTAP11-1Q8IUC1 163 aa13.25□□□□□ -0.29
CTCF-202ENST00000401394 PSPHP1O15172 72 aa13.24□□□□□ -0.29
CTCF-202ENST00000401394 TLX1NBP0CAT3 122 aa13.24□□□□□ -0.29
CTCF-202ENST00000401394 REG3GQ6UW15 175 aa13.23□□□□□ -0.29
CTCF-202ENST00000401394 HUWE1Q7Z6Z7 4374 aaKnown RBP13.23□□□□□ -0.29
CTCF-202ENST00000401394 hDV103S1A0JD37 113 aa13.23□□□□□ -0.29
CTCF-202ENST00000401394 CHTF8P0CG12 524 aa13.21□□□□□ -0.29
CTCF-202ENST00000401394 HCG22E2RYF7 251 aa13.2□□□□□ -0.3
CTCF-202ENST00000401394 ZCCHC13Q8WW36 166 aaKnown RBP13.2□□□□□ -0.3
CTCF-202ENST00000401394 DNAH7Q8WXX0 4024 aa13.2□□□□□ -0.3
CTCF-202ENST00000401394 KRTAP1-5Q9BYS1 174 aa13.2□□□□□ -0.3
CTCF-202ENST00000401394 PLA2G2DQ9UNK4 145 aa13.18□□□□□ -0.3
CTCF-202ENST00000401394 LCE6AA0A183 80 aa13.18□□□□□ -0.3
CTCF-202ENST00000401394 KRTAP24-1Q3LI83 254 aa13.17□□□□□ -0.3
CTCF-202ENST00000401394 IGLV5-37A0A075B6J1 123 aa13.16□□□□□ -0.3
CTCF-202ENST00000401394 A8MU10 97 aa13.16□□□□□ -0.3
CTCF-202ENST00000401394 LINC00208Q96KT6 92 aa13.13□□□□□ -0.31
CTCF-202ENST00000401394 PHF5AQ7RTV0 110 aaKnown RBP13.12□□□□□ -0.31
CTCF-202ENST00000401394 DNAH3Q8TD57 4116 aa13.12□□□□□ -0.31
CTCF-202ENST00000401394 F8WDY8 70 aa13.11□□□□□ -0.31
CTCF-202ENST00000401394 UBE2AP49459 152 aa13.06□□□□□ -0.32
CTCF-202ENST00000401394 TRAV22A0A0B4J277 110 aa13.05□□□□□ -0.32
CTCF-202ENST00000401394 A8MUN3 132 aa13.03□□□□□ -0.32
CTCF-202ENST00000401394 A0A1B0GW54 56 aa13.02□□□□□ -0.33
CTCF-202ENST00000401394 C1orf195Q5TG92 126 aa13.02□□□□□ -0.33
CTCF-202ENST00000401394 CNBPP62633 177 aaKnown RBP13.01□□□□□ -0.33
CTCF-202ENST00000401394 PANO1I0J062 215 aa12.99□□□□□ -0.33
CTCF-202ENST00000401394 KRTAP29-1A8MX34 341 aaPredicted RBP12.98□□□□□ -0.33
CTCF-202ENST00000401394 CASC2Q6XLA1 102 aa12.97□□□□□ -0.33
CTCF-202ENST00000401394 C16orf90A8MZG2 172 aa12.97□□□□□ -0.33
CTCF-202ENST00000401394 H0Y9P7 68 aa12.97□□□□□ -0.33
CTCF-202ENST00000401394 MP68P56378 58 aa12.95□□□□□ -0.34
CTCF-202ENST00000401394 Q1T7F1 81 aa12.95□□□□□ -0.34
CTCF-202ENST00000401394 FRAS1Q86XX4 4008 aa12.95□□□□□ -0.34
CTCF-202ENST00000401394 H0Y9J4 135 aa12.94□□□□□ -0.34
CTCF-202ENST00000401394 K7EIL1 84 aa12.93□□□□□ -0.34
CTCF-202ENST00000401394 PRR15Q8IV56 129 aa12.92□□□□□ -0.34
CTCF-202ENST00000401394 B9D2Q9BPU9 175 aa12.92□□□□□ -0.34
CTCF-202ENST00000401394 CYP4F30PQ9H0H9 118 aa12.9□□□□□ -0.34
CTCF-202ENST00000401394 LINC00472Q9H8W2 130 aa12.89□□□□□ -0.35
CTCF-202ENST00000401394 PCOTHQ58A44 107 aa12.88□□□□□ -0.35
CTCF-202ENST00000401394 PLECQ15149 4684 aaKnown RBP12.88□□□□□ -0.35
CTCF-202ENST00000401394 IGLV8-61A0A075B6I0 122 aa12.87□□□□□ -0.35
CTCF-202ENST00000401394 IGLV9-49A0A0B4J1Y8 123 aa12.87□□□□□ -0.35
CTCF-202ENST00000401394 ANAPC11Q9NYG5 84 aa12.85□□□□□ -0.35
CTCF-202ENST00000401394 A8MWP4 228 aa12.84□□□□□ -0.35
CTCF-202ENST00000401394 Q5VV11 94 aa12.83□□□□□ -0.36
CTCF-202ENST00000401394 UBE2DNLQ8IWF7 75 aa12.83□□□□□ -0.36
CTCF-202ENST00000401394 NDUFB1O75438 58 aa12.8□□□□□ -0.36
CTCF-202ENST00000401394 MMP24-AS1A0A0U1RRL7 71 aa12.79□□□□□ -0.36
CTCF-202ENST00000401394 Q8N9P0 234 aaPredicted RBP12.78□□□□□ -0.36
CTCF-202ENST00000401394 V9GYY9 64 aa12.78□□□□□ -0.36
CTCF-202ENST00000401394 PRR15LQ9BU68 103 aa12.77□□□□□ -0.36
CTCF-202ENST00000401394 CHKB-CPT1BH3BT56 60 aa12.76□□□□□ -0.37
CTCF-202ENST00000401394 C9orf163Q8N9P6 203 aa12.75□□□□□ -0.37
CTCF-202ENST00000401394 A0A087X002 238 aa12.74□□□□□ -0.37
CTCF-202ENST00000401394 NOTCH2NLQ7Z3S9 236 aa12.74□□□□□ -0.37
CTCF-202ENST00000401394 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.74□□□□□ -0.37
CTCF-202ENST00000401394 Q96NJ1 140 aa12.71□□□□□ -0.37
CTCF-202ENST00000401394 NDUFS5O43920 106 aa12.71□□□□□ -0.38
CTCF-202ENST00000401394 CD164Q04900 197 aa12.71□□□□□ -0.38
CTCF-202ENST00000401394 MOBPQ13875 183 aa12.7□□□□□ -0.38
CTCF-202ENST00000401394 COA5Q86WW8 74 aa12.7□□□□□ -0.38
CTCF-202ENST00000401394 SPRR1BP22528 89 aa12.7□□□□□ -0.38
CTCF-202ENST00000401394 IGHV6-1A0A0B4J1U7 121 aa12.69□□□□□ -0.38
CTCF-202ENST00000401394 DNAH8Q96JB1 4490 aa12.69□□□□□ -0.38
CTCF-202ENST00000401394 TGP01266 2768 aa12.68□□□□□ -0.38
CTCF-202ENST00000401394 KMT2AQ03164 3969 aa12.68□□□□□ -0.38
CTCF-202ENST00000401394 SPTSSBQ8NFR3 76 aa12.68□□□□□ -0.38
CTCF-202ENST00000401394 PMAIP1Q13794 54 aa12.67□□□□□ -0.38
CTCF-202ENST00000401394 APLNQ9ULZ1 77 aa12.67□□□□□ -0.38
CTCF-202ENST00000401394 SPAG11AQ6PDA7 123 aa12.65□□□□□ -0.38
CTCF-202ENST00000401394 STARD9Q9P2P6 4700 aa12.65□□□□□ -0.38
CTCF-202ENST00000401394 SPANXA2-OT1Q8N9U9 137 aa12.64□□□□□ -0.39
CTCF-202ENST00000401394 KRTAP13-1Q8IUC0 172 aa12.63□□□□□ -0.39
CTCF-202ENST00000401394 SEC61GP60059 68 aa12.63□□□□□ -0.39
CTCF-202ENST00000401394 LCA10Q71F78 164 aa12.63□□□□□ -0.39
CTCF-202ENST00000401394 C8orf17Q9NRJ1 99 aa12.58□□□□□ -0.4
CTCF-202ENST00000401394 SPINK6Q6UWN8 80 aa12.58□□□□□ -0.4
CTCF-202ENST00000401394 HECTD4Q9Y4D8 3996 aa12.58□□□□□ -0.4
CTCF-202ENST00000401394 IGLV7-46A0A075B6I9 117 aa12.57□□□□□ -0.4
CTCF-202ENST00000401394 A6NED7 52 aa12.56□□□□□ -0.4
CTCF-202ENST00000401394 FBN3Q75N90 2809 aa12.55□□□□□ -0.4
CTCF-202ENST00000401394 DNAH17Q9UFH2 4485 aa12.55□□□□□ -0.4
CTCF-202ENST00000401394 H3BPC8 53 aa12.54□□□□□ -0.4
CTCF-202ENST00000401394 MDFIQ99750 246 aa12.54□□□□□ -0.4
CTCF-202ENST00000401394 NBDYA0A0U1RRE5 68 aa12.53□□□□□ -0.4
CTCF-202ENST00000401394 Q6ZRN7 208 aaPredicted RBP12.53□□□□□ -0.4
CTCF-202ENST00000401394 DNAH2Q9P225 4427 aa12.53□□□□□ -0.4
CTCF-202ENST00000401394 LIMD2Q9BT23 127 aa12.53□□□□□ -0.4
CTCF-202ENST00000401394 C14orf177Q52M58 125 aa12.52□□□□□ -0.41
CTCF-202ENST00000401394 PSORS1C2Q9UIG4 136 aa12.5□□□□□ -0.41
CTCF-202ENST00000401394 MEGF8Q7Z7M0 2845 aa12.5□□□□□ -0.41
CTCF-202ENST00000401394 Q5W150 140 aa12.49□□□□□ -0.41
CTCF-202ENST00000401394 HRES1P13985 223 aa12.49□□□□□ -0.41
CTCF-202ENST00000401394 ASB16-AS1Q495Z4 193 aa12.48□□□□□ -0.41
CTCF-202ENST00000401394 SPACA4Q8TDM5 124 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 79.5 ms