RNA–Protein interactions for RNA: ENST00000393408.7

CBX1-202, Transcript of chromobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX1, Length 2,422 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX1-202ENST00000393408 DEFB116Q30KQ4 102 aa11.77□□□□□ -0.53
CBX1-202ENST00000393408 KRTAP11-1Q8IUC1 163 aa11.77□□□□□ -0.53
CBX1-202ENST00000393408 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.76□□□□□ -0.53
CBX1-202ENST00000393408 UBE2AP49459 152 aa11.76□□□□□ -0.53
CBX1-202ENST00000393408 LINC00336Q6ZUF6 198 aa11.75□□□□□ -0.53
CBX1-202ENST00000393408 CHTF8P0CG12 524 aa11.75□□□□□ -0.53
CBX1-202ENST00000393408 PHF5AQ7RTV0 110 aaKnown RBP11.75□□□□□ -0.53
CBX1-202ENST00000393408 LYSTQ99698 3801 aa11.74□□□□□ -0.53
CBX1-202ENST00000393408 DNAH9Q9NYC9 4486 aa11.73□□□□□ -0.53
CBX1-202ENST00000393408 C14orf177Q52M58 125 aa11.72□□□□□ -0.53
CBX1-202ENST00000393408 UBE2DNLQ8IWF7 75 aa11.72□□□□□ -0.53
CBX1-202ENST00000393408 H0Y9J4 135 aa11.72□□□□□ -0.53
CBX1-202ENST00000393408 SPRR1BP22528 89 aa11.72□□□□□ -0.53
CBX1-202ENST00000393408 APLNQ9ULZ1 77 aa11.71□□□□□ -0.53
CBX1-202ENST00000393408 WFDC13Q8IUB5 93 aa11.7□□□□□ -0.54
CBX1-202ENST00000393408 hDV103S1A0JD37 113 aa11.68□□□□□ -0.54
CBX1-202ENST00000393408 RPL37AP61513 92 aaKnown RBP11.68□□□□□ -0.54
CBX1-202ENST00000393408 MPLKIPQ8TAP9 179 aa11.67□□□□□ -0.54
CBX1-202ENST00000393408 COL7A1Q02388 2944 aa11.67□□□□□ -0.54
CBX1-202ENST00000393408 STAB2Q8WWQ8 2551 aa11.67□□□□□ -0.54
CBX1-202ENST00000393408 KRTAP29-1A8MX34 341 aaPredicted RBP11.66□□□□□ -0.54
CBX1-202ENST00000393408 PRO0628Q9UI54 55 aa11.66□□□□□ -0.54
CBX1-202ENST00000393408 C9orf163Q8N9P6 203 aa11.66□□□□□ -0.54
CBX1-202ENST00000393408 SRRM2Q9UQ35 2752 aaKnown RBP11.63□□□□□ -0.55
CBX1-202ENST00000393408 LRCOL1A6NCL2 159 aa11.63□□□□□ -0.55
CBX1-202ENST00000393408 C1orf64Q8NEQ6 169 aa11.63□□□□□ -0.55
CBX1-202ENST00000393408 LINC00472Q9H8W2 130 aa11.62□□□□□ -0.55
CBX1-202ENST00000393408 PRR15Q8IV56 129 aa11.61□□□□□ -0.55
CBX1-202ENST00000393408 DYNC2H1Q8NCM8 4307 aaKnown RBP11.61□□□□□ -0.55
CBX1-202ENST00000393408 B9D2Q9BPU9 175 aa11.6□□□□□ -0.55
CBX1-202ENST00000393408 CYP4F30PQ9H0H9 118 aa11.6□□□□□ -0.55
CBX1-202ENST00000393408 MGAM2Q2M2H8 2515 aa11.6□□□□□ -0.55
CBX1-202ENST00000393408 MP68P56378 58 aa11.6□□□□□ -0.55
CBX1-202ENST00000393408 A8MWP4 228 aa11.59□□□□□ -0.55
CBX1-202ENST00000393408 NDUFB1O75438 58 aa11.59□□□□□ -0.55
CBX1-202ENST00000393408 CASC2Q6XLA1 102 aa11.59□□□□□ -0.55
CBX1-202ENST00000393408 PKIGQ9Y2B9 76 aa11.59□□□□□ -0.55
CBX1-202ENST00000393408 PANO1I0J062 215 aa11.58□□□□□ -0.56
CBX1-202ENST00000393408 KRTAP13-1Q8IUC0 172 aa11.58□□□□□ -0.56
CBX1-202ENST00000393408 TRAV22A0A0B4J277 110 aa11.57□□□□□ -0.56
CBX1-202ENST00000393408 DNAH7Q8WXX0 4024 aa11.56□□□□□ -0.56
CBX1-202ENST00000393408 NBDYA0A0U1RRE5 68 aa11.56□□□□□ -0.56
CBX1-202ENST00000393408 LINC00208Q96KT6 92 aa11.55□□□□□ -0.56
CBX1-202ENST00000393408 PRR4Q16378 134 aa11.55□□□□□ -0.56
CBX1-202ENST00000393408 Q6ZRN7 208 aaPredicted RBP11.55□□□□□ -0.56
CBX1-202ENST00000393408 H0Y9P7 68 aa11.52□□□□□ -0.56
CBX1-202ENST00000393408 BRK1Q8WUW1 75 aa11.52□□□□□ -0.57
CBX1-202ENST00000393408 CSMD3Q7Z407 3707 aa11.52□□□□□ -0.57
CBX1-202ENST00000393408 TENM2Q9NT68 2774 aa11.51□□□□□ -0.57
CBX1-202ENST00000393408 Q1T7F1 81 aa11.51□□□□□ -0.57
CBX1-202ENST00000393408 H3BPC8 53 aa11.5□□□□□ -0.57
CBX1-202ENST00000393408 MMP24-AS1A0A0U1RRL7 71 aa11.48□□□□□ -0.57
CBX1-202ENST00000393408 MDFIQ99750 246 aa11.48□□□□□ -0.57
CBX1-202ENST00000393408 SPACA4Q8TDM5 124 aa11.47□□□□□ -0.57
CBX1-202ENST00000393408 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.47□□□□□ -0.57
CBX1-202ENST00000393408 PLECQ15149 4684 aaKnown RBP11.46□□□□□ -0.57
CBX1-202ENST00000393408 SPANXA2-OT1Q8N9U9 137 aa11.45□□□□□ -0.58
CBX1-202ENST00000393408 NUPR2A6NF83 97 aa11.44□□□□□ -0.58
CBX1-202ENST00000393408 Q96NJ1 140 aa11.44□□□□□ -0.58
CBX1-202ENST00000393408 IGLV9-49A0A0B4J1Y8 123 aa11.43□□□□□ -0.58
CBX1-202ENST00000393408 LINC00483Q53H64 154 aa11.41□□□□□ -0.58
CBX1-202ENST00000393408 ASB16-AS1Q495Z4 193 aa11.38□□□□□ -0.59
CBX1-202ENST00000393408 A0A087WTM6 91 aa11.36□□□□□ -0.59
CBX1-202ENST00000393408 MOBPQ13875 183 aa11.35□□□□□ -0.59
CBX1-202ENST00000393408 PSPHP1O15172 72 aa11.35□□□□□ -0.59
CBX1-202ENST00000393408 WWC2-AS2Q96NR7 200 aa11.34□□□□□ -0.59
CBX1-202ENST00000393408 ZNF706Q9Y5V0 76 aaPredicted RBP11.34□□□□□ -0.59
CBX1-202ENST00000393408 VPS13DQ5THJ4 4388 aa11.33□□□□□ -0.6
CBX1-202ENST00000393408 C8orf17Q9NRJ1 99 aa11.32□□□□□ -0.6
CBX1-202ENST00000393408 PSORS1C2Q9UIG4 136 aa11.32□□□□□ -0.6
CBX1-202ENST00000393408 V9GYY9 64 aa11.31□□□□□ -0.6
CBX1-202ENST00000393408 IGLV5-52A0A0A0MRZ9 124 aa11.31□□□□□ -0.6
CBX1-202ENST00000393408 TP53AIP1Q9HCN2 124 aa11.31□□□□□ -0.6
CBX1-202ENST00000393408 HECTD4Q9Y4D8 3996 aa11.29□□□□□ -0.6
CBX1-202ENST00000393408 RTL8CO15255 209 aa11.29□□□□□ -0.6
CBX1-202ENST00000393408 STARD9Q9P2P6 4700 aa11.28□□□□□ -0.6
CBX1-202ENST00000393408 A0A1B0GVX0 72 aa11.28□□□□□ -0.6
CBX1-202ENST00000393408 IGLV7-46A0A075B6I9 117 aa11.27□□□□□ -0.6
CBX1-202ENST00000393408 A8MUN3 132 aa11.27□□□□□ -0.61
CBX1-202ENST00000393408 PLAC8Q9NZF1 115 aa11.26□□□□□ -0.61
CBX1-202ENST00000393408 IGHV6-1A0A0B4J1U7 121 aa11.26□□□□□ -0.61
CBX1-202ENST00000393408 Q6ZR54 194 aa11.26□□□□□ -0.61
CBX1-202ENST00000393408 ANAPC11Q9NYG5 84 aa11.26□□□□□ -0.61
CBX1-202ENST00000393408 ZNF861PO60384 105 aa11.25□□□□□ -0.61
CBX1-202ENST00000393408 Q8N9P0 234 aaPredicted RBP11.24□□□□□ -0.61
CBX1-202ENST00000393408 PCOTHQ58A44 107 aa11.22□□□□□ -0.61
CBX1-202ENST00000393408 CD164Q04900 197 aa11.21□□□□□ -0.61
CBX1-202ENST00000393408 DNAH8Q96JB1 4490 aa11.21□□□□□ -0.61
CBX1-202ENST00000393408 CDK2AP2O75956 126 aa11.21□□□□□ -0.61
CBX1-202ENST00000393408 Q5VV11 94 aa11.21□□□□□ -0.61
CBX1-202ENST00000393408 COA5Q86WW8 74 aa11.21□□□□□ -0.61
CBX1-202ENST00000393408 PRKDCP78527 4128 aaKnown RBP11.21□□□□□ -0.62
CBX1-202ENST00000393408 C1orf195Q5TG92 126 aa11.2□□□□□ -0.62
CBX1-202ENST00000393408 MRPL34Q9BQ48 92 aaKnown RBP11.2□□□□□ -0.62
CBX1-202ENST00000393408 NDUFS5O43920 106 aa11.19□□□□□ -0.62
CBX1-202ENST00000393408 DNAH17Q9UFH2 4485 aa11.19□□□□□ -0.62
CBX1-202ENST00000393408 LIMD2Q9BT23 127 aa11.19□□□□□ -0.62
CBX1-202ENST00000393408 A0A087X002 238 aa11.18□□□□□ -0.62
CBX1-202ENST00000393408 NOTCH2NLQ7Z3S9 236 aa11.18□□□□□ -0.62
CBX1-202ENST00000393408 FRAS1Q86XX4 4008 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms