RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 ACYP2P14621 99 aa9.16□□□□□ -0.94
RTF1-201ENST00000389629 C16orf90A8MZG2 172 aa9.16□□□□□ -0.94
RTF1-201ENST00000389629 UBR5O95071 2799 aaPredicted RBP9.15□□□□□ -0.94
RTF1-201ENST00000389629 IGLV8-61A0A075B6I0 122 aa9.15□□□□□ -0.94
RTF1-201ENST00000389629 KRTAP10-11P60412 298 aa9.15□□□□□ -0.94
RTF1-201ENST00000389629 FBN2P35556 2912 aa9.15□□□□□ -0.95
RTF1-201ENST00000389629 HELZ2Q9BYK8 2649 aaKnown RBP9.15□□□□□ -0.95
RTF1-201ENST00000389629 IGKV2D-30A0A075B6S6 120 aa9.14□□□□□ -0.95
RTF1-201ENST00000389629 IGKV2-30P06310 120 aa9.14□□□□□ -0.95
RTF1-201ENST00000389629 TLX1NBP0CAT3 122 aa9.13□□□□□ -0.95
RTF1-201ENST00000389629 K7ERS5 55 aa9.13□□□□□ -0.95
RTF1-201ENST00000389629 CRYBG3Q68DQ2 2970 aa9.12□□□□□ -0.95
RTF1-201ENST00000389629 NF1P21359 2839 aa9.12□□□□□ -0.95
RTF1-201ENST00000389629 BAHCC1Q9P281 2608 aa9.12□□□□□ -0.95
RTF1-201ENST00000389629 PLA2G2DQ9UNK4 145 aa9.12□□□□□ -0.95
RTF1-201ENST00000389629 SVEP1Q4LDE5 3571 aa9.11□□□□□ -0.95
RTF1-201ENST00000389629 C7orf65Q6ZTY9 151 aa9.11□□□□□ -0.95
RTF1-201ENST00000389629 SPANXA2-OT1Q8N9U9 137 aa9.1□□□□□ -0.95
RTF1-201ENST00000389629 SPRR4Q96PI1 79 aa9.1□□□□□ -0.95
RTF1-201ENST00000389629 COL6A5A8TX70 2615 aa9.09□□□□□ -0.95
RTF1-201ENST00000389629 C8orf87E5RJ46 101 aa9.09□□□□□ -0.95
RTF1-201ENST00000389629 MRPL34Q9BQ48 92 aaKnown RBP9.08□□□□□ -0.96
RTF1-201ENST00000389629 C8orf17Q9NRJ1 99 aa9.08□□□□□ -0.96
RTF1-201ENST00000389629 RBM12B-AS1Q9P1G2 102 aa9.08□□□□□ -0.96
RTF1-201ENST00000389629 Q8N9P0 234 aaPredicted RBP9.07□□□□□ -0.96
RTF1-201ENST00000389629 KRTAP24-1Q3LI83 254 aa9.07□□□□□ -0.96
RTF1-201ENST00000389629 TEP1Q99973 2627 aaKnown RBP9.06□□□□□ -0.96
RTF1-201ENST00000389629 CDC42SE1Q9NRR8 79 aa9.06□□□□□ -0.96
RTF1-201ENST00000389629 Q5VV11 94 aa9.05□□□□□ -0.96
RTF1-201ENST00000389629 CELSR1Q9NYQ6 3014 aa9.05□□□□□ -0.96
RTF1-201ENST00000389629 PRR26Q8N8Z3 221 aa9.04□□□□□ -0.96
RTF1-201ENST00000389629 MXRA5Q9NR99 2828 aa9.03□□□□□ -0.96
RTF1-201ENST00000389629 CELSR2Q9HCU4 2923 aa9.02□□□□□ -0.97
RTF1-201ENST00000389629 LCA10Q71F78 164 aa9.02□□□□□ -0.97
RTF1-201ENST00000389629 IGLV5-37A0A075B6J1 123 aa9.02□□□□□ -0.97
RTF1-201ENST00000389629 SPENQ96T58 3664 aaKnown RBP9.01□□□□□ -0.97
RTF1-201ENST00000389629 ANAPC11Q9NYG5 84 aa9□□□□□ -0.97
RTF1-201ENST00000389629 NBEAL1Q6ZS30 2694 aa9□□□□□ -0.97
RTF1-201ENST00000389629 IGLV5-52A0A0A0MRZ9 124 aa9□□□□□ -0.97
RTF1-201ENST00000389629 MDFIQ99750 246 aa8.99□□□□□ -0.97
RTF1-201ENST00000389629 A0A1B0GVX0 72 aa8.99□□□□□ -0.97
RTF1-201ENST00000389629 KRTAP26-1Q6PEX3 210 aa8.99□□□□□ -0.97
RTF1-201ENST00000389629 NUPR2A6NF83 97 aa8.98□□□□□ -0.97
RTF1-201ENST00000389629 CNBPP62633 177 aaKnown RBP8.98□□□□□ -0.97
RTF1-201ENST00000389629 Q75L30 129 aa8.96□□□□□ -0.97
RTF1-201ENST00000389629 SPACA4Q8TDM5 124 aa8.96□□□□□ -0.98
RTF1-201ENST00000389629 UQCR11O14957 56 aa8.96□□□□□ -0.98
RTF1-201ENST00000389629 IGLV7-46A0A075B6I9 117 aa8.95□□□□□ -0.98
RTF1-201ENST00000389629 LY6G6CO95867 125 aa8.95□□□□□ -0.98
RTF1-201ENST00000389629 SPRR1AP35321 89 aa8.95□□□□□ -0.98
RTF1-201ENST00000389629 LINC00313P59037 77 aa8.95□□□□□ -0.98
RTF1-201ENST00000389629 APCP25054 2843 aa8.95□□□□□ -0.98
RTF1-201ENST00000389629 MIR22HGQ0VDD5 57 aa8.94□□□□□ -0.98
RTF1-201ENST00000389629 ITPR2Q14571 2701 aa8.94□□□□□ -0.98
RTF1-201ENST00000389629 NBDYA0A0U1RRE5 68 aa8.93□□□□□ -0.98
RTF1-201ENST00000389629 PRAC1Q96KF2 57 aa8.92□□□□□ -0.98
RTF1-201ENST00000389629 HIVEP1P15822 2718 aa8.91□□□□□ -0.98
RTF1-201ENST00000389629 K7EIL1 84 aa8.9□□□□□ -0.99
RTF1-201ENST00000389629 STAB1Q9NY15 2570 aa8.89□□□□□ -0.99
RTF1-201ENST00000389629 FAM229AH3BQW9 127 aa8.89□□□□□ -0.99
RTF1-201ENST00000389629 SPINK7P58062 85 aa8.88□□□□□ -0.99
RTF1-201ENST00000389629 TNP2Q05952 138 aa8.88□□□□□ -0.99
RTF1-201ENST00000389629 C9orf163Q8N9P6 203 aa8.88□□□□□ -0.99
RTF1-201ENST00000389629 A8MU10 97 aa8.88□□□□□ -0.99
RTF1-201ENST00000389629 MMP24-AS1A0A0U1RRL7 71 aa8.88□□□□□ -0.99
RTF1-201ENST00000389629 ZCCHC13Q8WW36 166 aaKnown RBP8.87□□□□□ -0.99
RTF1-201ENST00000389629 LINC01558Q9Y6Z2 57 aa8.86□□□□□ -0.99
RTF1-201ENST00000389629 CUBNO60494 3623 aa8.86□□□□□ -0.99
RTF1-201ENST00000389629 RTL8CO15255 209 aa8.86□□□□□ -0.99
RTF1-201ENST00000389629 KRTAP4-16G5E9R7 235 aaPredicted RBP8.83□□□□□ -1
RTF1-201ENST00000389629 C1orf134Q5TEV5 83 aa8.83□□□□□ -1
RTF1-201ENST00000389629 HRES1P13985 223 aa8.83□□□□□ -1
RTF1-201ENST00000389629 LINC00472Q9H8W2 130 aa8.82□□□□□ -1
RTF1-201ENST00000389629 NSD1Q96L73 2696 aaPredicted RBP8.81□□□□□ -1
RTF1-201ENST00000389629 NIPBLQ6KC79 2804 aaeCLIP8.8□□□□□ -16e-6■■■□□ 16.7
RTF1-201ENST00000389629 Q96NJ1 140 aa8.78□□□□□ -1
RTF1-201ENST00000389629 ZNF861PO60384 105 aa8.78□□□□□ -1
RTF1-201ENST00000389629 PSORS1C2Q9UIG4 136 aa8.77□□□□□ -1
RTF1-201ENST00000389629 SSBP3-AS1Q7Z2R9 100 aa8.75□□□□□ -1.01
RTF1-201ENST00000389629 KRTAP29-1A8MX34 341 aaPredicted RBP8.74□□□□□ -1.01
RTF1-201ENST00000389629 LINC01554Q52M75 96 aa8.74□□□□□ -1.01
RTF1-201ENST00000389629 APLNQ9ULZ1 77 aa8.74□□□□□ -1.01
RTF1-201ENST00000389629 KRTAP1-5Q9BYS1 174 aa8.73□□□□□ -1.01
RTF1-201ENST00000389629 LCE6AA0A183 80 aa8.72□□□□□ -1.01
RTF1-201ENST00000389629 A0A087WTM6 91 aa8.71□□□□□ -1.02
RTF1-201ENST00000389629 Q8N1X5 172 aa8.71□□□□□ -1.02
RTF1-201ENST00000389629 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.7□□□□□ -1.02
RTF1-201ENST00000389629 STAB2Q8WWQ8 2551 aa8.7□□□□□ -1.02
RTF1-201ENST00000389629 KRTAP7-1Q8IUC3 87 aa8.7□□□□□ -1.02
RTF1-201ENST00000389629 SPRR1BP22528 89 aa8.69□□□□□ -1.02
RTF1-201ENST00000389629 H3BS24 57 aa8.69□□□□□ -1.02
RTF1-201ENST00000389629 BSNQ9UPA5 3926 aa8.68□□□□□ -1.02
RTF1-201ENST00000389629 SPINT4Q6UDR6 99 aa8.67□□□□□ -1.02
RTF1-201ENST00000389629 TYMSOSQ8TAI1 123 aa8.66□□□□□ -1.02
RTF1-201ENST00000389629 CSAG1Q6PB30 78 aa8.63□□□□□ -1.03
RTF1-201ENST00000389629 IGLV7-43P04211 117 aa8.62□□□□□ -1.03
RTF1-201ENST00000389629 DMBT1Q9UGM3 2413 aaPredicted RBP8.62□□□□□ -1.03
RTF1-201ENST00000389629 A6NN06 94 aa8.62□□□□□ -1.03
RTF1-201ENST00000389629 PLA2G1BP04054 148 aaKnown RBP8.6□□□□□ -1.03
RTF1-201ENST00000389629 KRTAP11-1Q8IUC1 163 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms