RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 ERC2-IT1O76042 136 aa9.79□□□□□ -0.84
CCDC40-202ENST00000374876 NREPQ16612 68 aa9.79□□□□□ -0.84
CCDC40-202ENST00000374876 BCE1O60756 84 aa9.77□□□□□ -0.85
CCDC40-202ENST00000374876 A0A1W2PNN7 141 aa9.77□□□□□ -0.85
CCDC40-202ENST00000374876 C1orf137Q5JT78 98 aa9.76□□□□□ -0.85
CCDC40-202ENST00000374876 CYSTM1Q9H1C7 97 aa9.75□□□□□ -0.85
CCDC40-202ENST00000374876 IGLV5-52A0A0A0MRZ9 124 aa9.75□□□□□ -0.85
CCDC40-202ENST00000374876 A0A1B0GW54 56 aa9.74□□□□□ -0.85
CCDC40-202ENST00000374876 SMIM20Q8N5G0 67 aa9.74□□□□□ -0.85
CCDC40-202ENST00000374876 DNAH5Q8TE73 4624 aa9.73□□□□□ -0.85
CCDC40-202ENST00000374876 TRAV7A0A075B6U4 112 aa9.73□□□□□ -0.85
CCDC40-202ENST00000374876 A0A1W2PNM2 257 aa9.73□□□□□ -0.85
CCDC40-202ENST00000374876 BPY2O14599 106 aa9.72□□□□□ -0.85
CCDC40-202ENST00000374876 PRLHP81277 87 aa9.72□□□□□ -0.85
CCDC40-202ENST00000374876 BIRC6Q9NR09 4857 aa9.72□□□□□ -0.85
CCDC40-202ENST00000374876 Q8NBF4 154 aa9.72□□□□□ -0.85
CCDC40-202ENST00000374876 CHTF8P0CG12 524 aa9.71□□□□□ -0.86
CCDC40-202ENST00000374876 Q8N9L7 120 aa9.71□□□□□ -0.86
CCDC40-202ENST00000374876 F8WEM9 126 aa9.7□□□□□ -0.86
CCDC40-202ENST00000374876 KRTAP10-1P60331 282 aa9.7□□□□□ -0.86
CCDC40-202ENST00000374876 PKIGQ9Y2B9 76 aa9.7□□□□□ -0.86
CCDC40-202ENST00000374876 TMEM258P61165 79 aa9.69□□□□□ -0.86
CCDC40-202ENST00000374876 SMIM29Q86T20 159 aa9.69□□□□□ -0.86
CCDC40-202ENST00000374876 C20orf197Q8N268 126 aa9.69□□□□□ -0.86
CCDC40-202ENST00000374876 C9orf163Q8N9P6 203 aa9.69□□□□□ -0.86
CCDC40-202ENST00000374876 IGKV4-1P06312 121 aa9.68□□□□□ -0.86
CCDC40-202ENST00000374876 PHF5AQ7RTV0 110 aaKnown RBP9.68□□□□□ -0.86
CCDC40-202ENST00000374876 HIGD2AQ9BW72 106 aa9.68□□□□□ -0.86
CCDC40-202ENST00000374876 DYNC1H1Q14204 4646 aaKnown RBP9.68□□□□□ -0.86
CCDC40-202ENST00000374876 SPRR4Q96PI1 79 aa9.67□□□□□ -0.86
CCDC40-202ENST00000374876 LRP1BQ9NZR2 4599 aa9.67□□□□□ -0.86
CCDC40-202ENST00000374876 LINC00474Q9P2X8 69 aa9.65□□□□□ -0.86
CCDC40-202ENST00000374876 KRTAP11-1Q8IUC1 163 aa9.63□□□□□ -0.87
CCDC40-202ENST00000374876 FAM30AQ9NZY2 134 aa9.63□□□□□ -0.87
CCDC40-202ENST00000374876 EPM2AB3EWF7 344 aa9.62□□□□□ -0.87
CCDC40-202ENST00000374876 H0Y9J4 135 aa9.61□□□□□ -0.87
CCDC40-202ENST00000374876 DPH3Q96FX2 82 aa9.61□□□□□ -0.87
CCDC40-202ENST00000374876 KIAA1109Q2LD37 5005 aa9.61□□□□□ -0.87
CCDC40-202ENST00000374876 UBE2AP49459 152 aa9.61□□□□□ -0.87
CCDC40-202ENST00000374876 IGFL1Q6UW32 110 aa9.61□□□□□ -0.87
CCDC40-202ENST00000374876 J3KT08 172 aa9.6□□□□□ -0.87
CCDC40-202ENST00000374876 IGLV8-61A0A075B6I0 122 aa9.59□□□□□ -0.87
CCDC40-202ENST00000374876 A0A0G2JQZ4 141 aa9.59□□□□□ -0.87
CCDC40-202ENST00000374876 KLKP1Q107X0 134 aa9.59□□□□□ -0.87
CCDC40-202ENST00000374876 CDK2AP2O75956 126 aa9.58□□□□□ -0.88
CCDC40-202ENST00000374876 PANO1I0J062 215 aa9.57□□□□□ -0.88
CCDC40-202ENST00000374876 SNURFQ9Y675 71 aa9.57□□□□□ -0.88
CCDC40-202ENST00000374876 RPS28P62857 69 aaKnown RBP9.56□□□□□ -0.88
CCDC40-202ENST00000374876 Q6ZSA8 131 aa9.55□□□□□ -0.88
CCDC40-202ENST00000374876 APOBP04114 4563 aaKnown RBP9.55□□□□□ -0.88
CCDC40-202ENST00000374876 H7BZZ5 65 aa9.55□□□□□ -0.88
CCDC40-202ENST00000374876 SPRR1BP22528 89 aa9.55□□□□□ -0.88
CCDC40-202ENST00000374876 DSCR10P59022 87 aa9.55□□□□□ -0.88
CCDC40-202ENST00000374876 KRTAP17-1Q9BYP8 105 aa9.54□□□□□ -0.88
CCDC40-202ENST00000374876 OCR1Q9BZK8 76 aa9.54□□□□□ -0.88
CCDC40-202ENST00000374876 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.54□□□□□ -0.88
CCDC40-202ENST00000374876 SPACA4Q8TDM5 124 aa9.53□□□□□ -0.88
CCDC40-202ENST00000374876 A0A087WSZ3 146 aa9.53□□□□□ -0.88
CCDC40-202ENST00000374876 SRRM2Q9UQ35 2752 aaKnown RBP9.53□□□□□ -0.88
CCDC40-202ENST00000374876 RYR1P21817 5038 aa9.52□□□□□ -0.88
CCDC40-202ENST00000374876 K7EQZ3 153 aa9.52□□□□□ -0.89
CCDC40-202ENST00000374876 SMR3BP02814 79 aaPredicted RBP9.52□□□□□ -0.89
CCDC40-202ENST00000374876 DNAH8Q96JB1 4490 aa9.51□□□□□ -0.89
CCDC40-202ENST00000374876 FAM236DA0A1B0GTK5 79 aa9.51□□□□□ -0.89
CCDC40-202ENST00000374876 FAM236CP0DP71 79 aa9.51□□□□□ -0.89
CCDC40-202ENST00000374876 TMEM254Q8TBM7 123 aa9.51□□□□□ -0.89
CCDC40-202ENST00000374876 CIRBP-AS1Q8TBR5 109 aa9.51□□□□□ -0.89
CCDC40-202ENST00000374876 HSPG2P98160 4391 aa9.5□□□□□ -0.89
CCDC40-202ENST00000374876 NDUFC1O43677 76 aa9.5□□□□□ -0.89
CCDC40-202ENST00000374876 KRTAP13-1Q8IUC0 172 aa9.49□□□□□ -0.89
CCDC40-202ENST00000374876 DEFB116Q30KQ4 102 aa9.48□□□□□ -0.89
CCDC40-202ENST00000374876 HCG22E2RYF7 251 aa9.45□□□□□ -0.9
CCDC40-202ENST00000374876 HERC2O95714 4834 aa9.45□□□□□ -0.9
CCDC40-202ENST00000374876 Q8N1X5 172 aa9.44□□□□□ -0.9
CCDC40-202ENST00000374876 A0A0U1RQV1 116 aa9.43□□□□□ -0.9
CCDC40-202ENST00000374876 KRTAP4-5Q9BYR2 181 aa9.43□□□□□ -0.9
CCDC40-202ENST00000374876 OXTP01178 125 aa9.42□□□□□ -0.9
CCDC40-202ENST00000374876 PLAC8Q9NZF1 115 aa9.4□□□□□ -0.9
CCDC40-202ENST00000374876 RPL37AP61513 92 aaKnown RBP9.39□□□□□ -0.91
CCDC40-202ENST00000374876 SERP1Q9Y6X1 66 aa9.39□□□□□ -0.91
CCDC40-202ENST00000374876 Q5VSD8 79 aa9.39□□□□□ -0.91
CCDC40-202ENST00000374876 FAT1Q14517 4588 aa9.38□□□□□ -0.91
CCDC40-202ENST00000374876 IGLV9-49A0A0B4J1Y8 123 aa9.38□□□□□ -0.91
CCDC40-202ENST00000374876 ATP5EP56381 51 aaPredicted RBP9.38□□□□□ -0.91
CCDC40-202ENST00000374876 PSORS1C2Q9UIG4 136 aa9.38□□□□□ -0.91
CCDC40-202ENST00000374876 ZNF706Q9Y5V0 76 aaPredicted RBP9.38□□□□□ -0.91
CCDC40-202ENST00000374876 FAM229AH3BQW9 127 aa9.37□□□□□ -0.91
CCDC40-202ENST00000374876 WFDC13Q8IUB5 93 aa9.37□□□□□ -0.91
CCDC40-202ENST00000374876 LINC00472Q9H8W2 130 aa9.37□□□□□ -0.91
CCDC40-202ENST00000374876 LINC00483Q53H64 154 aa9.36□□□□□ -0.91
CCDC40-202ENST00000374876 A8MWP4 228 aa9.34□□□□□ -0.91
CCDC40-202ENST00000374876 PRR15Q8IV56 129 aa9.34□□□□□ -0.91
CCDC40-202ENST00000374876 C5orf47Q569G3 176 aa9.34□□□□□ -0.91
CCDC40-202ENST00000374876 ZNF861PO60384 105 aa9.32□□□□□ -0.92
CCDC40-202ENST00000374876 VPS13BQ7Z7G8 4022 aa9.31□□□□□ -0.92
CCDC40-202ENST00000374876 CASC2Q6XLA1 102 aa9.31□□□□□ -0.92
CCDC40-202ENST00000374876 KRTAP29-1A8MX34 341 aaPredicted RBP9.3□□□□□ -0.92
CCDC40-202ENST00000374876 PLA2G1BP04054 148 aaKnown RBP9.3□□□□□ -0.92
CCDC40-202ENST00000374876 KRTAP10-4P60372 401 aaPredicted RBP9.29□□□□□ -0.92
CCDC40-202ENST00000374876 HRCT1Q6UXD1 115 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms