RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 ELOF1P60002 83 aaKnown RBP1.42□□□□□ -2.18
VPS54-202ENST00000354504 CNBPP62633 177 aaKnown RBP1.42□□□□□ -2.18
VPS54-202ENST00000354504 SPAG11BQ08648 103 aa1.42□□□□□ -2.18
VPS54-202ENST00000354504 CAMK2N2Q96S95 79 aa1.42□□□□□ -2.18
VPS54-202ENST00000354504 SIGMAR1Q99720 223 aa1.42□□□□□ -2.18
VPS54-202ENST00000354504 KCNQ1DNQ9H478 68 aa1.42□□□□□ -2.18
VPS54-202ENST00000354504 IGLV5-48A0A075B6I7 105 aa1.42□□□□□ -2.18
VPS54-202ENST00000354504 IGKV2-24A0A0C4DH68 120 aa1.42□□□□□ -2.18
VPS54-202ENST00000354504 NCR3O14931 201 aa1.42□□□□□ -2.18
VPS54-202ENST00000354504 SLC25A20O43772 301 aa1.42□□□□□ -2.18
VPS54-202ENST00000354504 RPL18AQ02543 176 aaKnown RBP1.42□□□□□ -2.18
VPS54-202ENST00000354504 LINC00575Q6W349 94 aa1.42□□□□□ -2.18
VPS54-202ENST00000354504 DHRS4-AS1Q9P1J3 65 aa1.42□□□□□ -2.18
VPS54-202ENST00000354504 IGLV1-50A0A075B6I6 118 aa1.41□□□□□ -2.18
VPS54-202ENST00000354504 H3BT86 120 aa1.41□□□□□ -2.18
VPS54-202ENST00000354504 LYRM7Q5U5X0 104 aa1.41□□□□□ -2.18
VPS54-202ENST00000354504 Q8N814 137 aa1.41□□□□□ -2.18
VPS54-202ENST00000354504 B9D2Q9BPU9 175 aa1.41□□□□□ -2.18
VPS54-202ENST00000354504 HMCN2Q8NDA2 5059 aa1.41□□□□□ -2.18
VPS54-202ENST00000354504 FUSP35637 526 aaKnown RBP eCLIP1.41□□□□□ -2.18
VPS54-202ENST00000354504 MUC7Q8TAX7 377 aa1.41□□□□□ -2.18
VPS54-202ENST00000354504 LOC110117498A0A087WWA1 95 aa1.41□□□□□ -2.18
VPS54-202ENST00000354504 A0A1W2PNN7 141 aa1.41□□□□□ -2.18
VPS54-202ENST00000354504 Q6ZQT0 140 aa1.41□□□□□ -2.18
VPS54-202ENST00000354504 Q6ZSA8 131 aa1.41□□□□□ -2.18
VPS54-202ENST00000354504 M0R378 163 aa1.4□□□□□ -2.19
VPS54-202ENST00000354504 ERC2-IT1O76042 136 aa1.4□□□□□ -2.19
VPS54-202ENST00000354504 KRTAP5-9P26371 169 aa1.4□□□□□ -2.19
VPS54-202ENST00000354504 ATXN8Q156A1 80 aa1.4□□□□□ -2.19
VPS54-202ENST00000354504 ASB16-AS1Q495Z4 193 aa1.4□□□□□ -2.19
VPS54-202ENST00000354504 Q6Q795 121 aa1.4□□□□□ -2.19
VPS54-202ENST00000354504 Q8N377 158 aa1.4□□□□□ -2.19
VPS54-202ENST00000354504 DEFB105AQ8NG35 78 aa1.4□□□□□ -2.19
VPS54-202ENST00000354504 Q96NJ1 140 aa1.4□□□□□ -2.19
VPS54-202ENST00000354504 HERC1Q15751 4861 aa1.4□□□□□ -2.19
VPS54-202ENST00000354504 IGLV8-61A0A075B6I0 122 aa1.4□□□□□ -2.19
VPS54-202ENST00000354504 LCE6AA0A183 80 aa1.4□□□□□ -2.19
VPS54-202ENST00000354504 A0A1B0GVY2 172 aa1.4□□□□□ -2.19
VPS54-202ENST00000354504 NDUFC2-KCTD14E9PQ53 114 aa1.4□□□□□ -2.19
VPS54-202ENST00000354504 BAALC-AS2P0C853 105 aa1.4□□□□□ -2.19
VPS54-202ENST00000354504 C6orf99Q4VX62 202 aa1.4□□□□□ -2.19
VPS54-202ENST00000354504 KRTAP5-4Q6L8H1 288 aa1.4□□□□□ -2.19
VPS54-202ENST00000354504 PPDPFLQ8WWR9 84 aa1.4□□□□□ -2.19
VPS54-202ENST00000354504 CBY1Q9Y3M2 126 aa1.4□□□□□ -2.19
VPS54-202ENST00000354504 TRBV10-3A0A0K0K1G6 114 aa1.39□□□□□ -2.19
VPS54-202ENST00000354504 CXCL5P42830 114 aa1.39□□□□□ -2.19
VPS54-202ENST00000354504 LAMTOR3Q9UHA4 124 aa1.39□□□□□ -2.19
VPS54-202ENST00000354504 A0A096LNI7 61 aa1.39□□□□□ -2.19
VPS54-202ENST00000354504 TRAV13-2A0A0B4J235 113 aa1.39□□□□□ -2.19
VPS54-202ENST00000354504 TRAV10A0A0B4J240 114 aa1.39□□□□□ -2.19
VPS54-202ENST00000354504 COPS9Q8WXC6 57 aa1.39□□□□□ -2.19
VPS54-202ENST00000354504 LINC00846Q9NV44 126 aa1.39□□□□□ -2.19
VPS54-202ENST00000354504 MUC2Q02817 5179 aa1.39□□□□□ -2.19
VPS54-202ENST00000354504 SPACA4Q8TDM5 124 aa1.39□□□□□ -2.19
VPS54-202ENST00000354504 SNCGO76070 127 aa1.38□□□□□ -2.19
VPS54-202ENST00000354504 LY6G6CO95867 125 aa1.38□□□□□ -2.19
VPS54-202ENST00000354504 SPRR1BP22528 89 aa1.38□□□□□ -2.19
VPS54-202ENST00000354504 SYCNQ0VAF6 134 aa1.38□□□□□ -2.19
VPS54-202ENST00000354504 TTC32Q5I0X7 151 aa1.38□□□□□ -2.19
VPS54-202ENST00000354504 FAM19A5Q7Z5A7 132 aaPredicted RBP1.38□□□□□ -2.19
VPS54-202ENST00000354504 NKAPP1Q8N9T2 125 aa1.38□□□□□ -2.19
VPS54-202ENST00000354504 C7orf33Q8WU49 177 aa1.38□□□□□ -2.19
VPS54-202ENST00000354504 SPRR4Q96PI1 79 aa1.38□□□□□ -2.19
VPS54-202ENST00000354504 TMEM126AQ9H061 195 aa1.38□□□□□ -2.19
VPS54-202ENST00000354504 C14orf132Q9NPU4 83 aa1.38□□□□□ -2.19
VPS54-202ENST00000354504 LINC00483Q53H64 154 aa1.38□□□□□ -2.19
VPS54-202ENST00000354504 C15orf53Q8NAA6 179 aa1.38□□□□□ -2.19
VPS54-202ENST00000354504 A0A1W2PNM2 257 aa1.38□□□□□ -2.19
VPS54-202ENST00000354504 RTL8CO15255 209 aa1.38□□□□□ -2.19
VPS54-202ENST00000354504 KRTAP13-3Q3SY46 172 aa1.38□□□□□ -2.19
VPS54-202ENST00000354504 Q6ZQY7 126 aa1.38□□□□□ -2.19
VPS54-202ENST00000354504 OXTP01178 125 aa1.37□□□□□ -2.19
VPS54-202ENST00000354504 CCKP06307 115 aa1.37□□□□□ -2.19
VPS54-202ENST00000354504 UBE2BP63146 152 aa1.37□□□□□ -2.19
VPS54-202ENST00000354504 LCE3CQ5T5A8 94 aa1.37□□□□□ -2.19
VPS54-202ENST00000354504 Q6ZRX8 168 aa1.37□□□□□ -2.19
VPS54-202ENST00000354504 HIGD2AQ9BW72 106 aa1.37□□□□□ -2.19
VPS54-202ENST00000354504 H0Y9J4 135 aa1.37□□□□□ -2.19
VPS54-202ENST00000354504 HAMPP81172 84 aa1.37□□□□□ -2.19
VPS54-202ENST00000354504 DMBT1Q9UGM3 2413 aaPredicted RBP1.37□□□□□ -2.19
VPS54-202ENST00000354504 IGKV3D-7A0A0C4DH55 119 aa1.37□□□□□ -2.19
VPS54-202ENST00000354504 C16orf90A8MZG2 172 aa1.37□□□□□ -2.19
VPS54-202ENST00000354504 KRTAP1-4P0C5Y4 121 aa1.37□□□□□ -2.19
VPS54-202ENST00000354504 C3orf22Q8N5N4 141 aa1.37□□□□□ -2.19
VPS54-202ENST00000354504 C9orf163Q8N9P6 203 aa1.37□□□□□ -2.19
VPS54-202ENST00000354504 ST20-AS1Q8NBB2 130 aa1.37□□□□□ -2.19
VPS54-202ENST00000354504 TRAV23DV6A0A075B6W5 121 aa1.36□□□□□ -2.19
VPS54-202ENST00000354504 H0YGX0 51 aa1.36□□□□□ -2.19
VPS54-202ENST00000354504 ZNF73O43830 326 aaPredicted RBP1.36□□□□□ -2.19
VPS54-202ENST00000354504 Q6JHZ5 121 aa1.36□□□□□ -2.19
VPS54-202ENST00000354504 OCR1Q9BZK8 76 aa1.36□□□□□ -2.19
VPS54-202ENST00000354504 ORMDL1Q9P0S3 153 aa1.36□□□□□ -2.19
VPS54-202ENST00000354504 FLG2Q5D862 2391 aaPredicted RBP1.36□□□□□ -2.19
VPS54-202ENST00000354504 A0A0G2JQZ4 141 aa1.36□□□□□ -2.19
VPS54-202ENST00000354504 hADV29S1A0JD25 119 aa1.36□□□□□ -2.19
VPS54-202ENST00000354504 SCXQ7RTU7 201 aa1.36□□□□□ -2.19
VPS54-202ENST00000354504 DIRC1Q969H9 104 aa1.36□□□□□ -2.19
VPS54-202ENST00000354504 PLAC8Q9NZF1 115 aa1.36□□□□□ -2.19
VPS54-202ENST00000354504 NBDYA0A0U1RRE5 68 aa1.36□□□□□ -2.19
VPS54-202ENST00000354504 ETDCA0A1B0GVM5 59 aa1.36□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms