RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 SPRR1BP22528 89 aa2.98□□□□□ -1.93
CSMD3-203ENST00000343508 KRTAP24-1Q3LI83 254 aa2.98□□□□□ -1.93
CSMD3-203ENST00000343508 ASB16-AS1Q495Z4 193 aa2.98□□□□□ -1.93
CSMD3-203ENST00000343508 BDP1A6H8Y1 2624 aa2.98□□□□□ -1.93
CSMD3-203ENST00000343508 KRTAP4-16G5E9R7 235 aaPredicted RBP2.98□□□□□ -1.93
CSMD3-203ENST00000343508 PSORS1C2Q9UIG4 136 aa2.98□□□□□ -1.93
CSMD3-203ENST00000343508 ZCCHC13Q8WW36 166 aaKnown RBP2.98□□□□□ -1.93
CSMD3-203ENST00000343508 LINC01554Q52M75 96 aa2.98□□□□□ -1.93
CSMD3-203ENST00000343508 KRTAP1-1Q07627 177 aa2.98□□□□□ -1.93
CSMD3-203ENST00000343508 CASC10Q5T4H9 136 aa2.97□□□□□ -1.93
CSMD3-203ENST00000343508 IGLV7-43P04211 117 aa2.97□□□□□ -1.93
CSMD3-203ENST00000343508 PLA2G1BP04054 148 aaKnown RBP2.97□□□□□ -1.93
CSMD3-203ENST00000343508 HRES1P13985 223 aa2.97□□□□□ -1.93
CSMD3-203ENST00000343508 PRR26Q8N8Z3 221 aa2.97□□□□□ -1.93
CSMD3-203ENST00000343508 CEP295Q9C0D2 2601 aa2.97□□□□□ -1.93
CSMD3-203ENST00000343508 KRTAP26-1Q6PEX3 210 aa2.97□□□□□ -1.93
CSMD3-203ENST00000343508 A0A087WTM6 91 aa2.96□□□□□ -1.94
CSMD3-203ENST00000343508 Q6ZR54 194 aa2.96□□□□□ -1.94
CSMD3-203ENST00000343508 ASH1LQ9NR48 2969 aaKnown RBP2.95□□□□□ -1.94
CSMD3-203ENST00000343508 KRTAP29-1A8MX34 341 aaPredicted RBP2.95□□□□□ -1.94
CSMD3-203ENST00000343508 K7EIL1 84 aa2.95□□□□□ -1.94
CSMD3-203ENST00000343508 APLNQ9ULZ1 77 aa2.94□□□□□ -1.94
CSMD3-203ENST00000343508 USP9XQ93008 2570 aaPredicted RBP2.94□□□□□ -1.94
CSMD3-203ENST00000343508 COL12A1Q99715 3063 aa2.94□□□□□ -1.94
CSMD3-203ENST00000343508 DOPEY1Q5JWR5 2465 aa2.94□□□□□ -1.94
CSMD3-203ENST00000343508 CRIPTQ9P021 101 aa2.94□□□□□ -1.94
CSMD3-203ENST00000343508 CCDC168Q8NDH2 2452 aa2.94□□□□□ -1.94
CSMD3-203ENST00000343508 ABCA12Q86UK0 2595 aa2.94□□□□□ -1.94
CSMD3-203ENST00000343508 ANAPC11Q9NYG5 84 aa2.93□□□□□ -1.94
CSMD3-203ENST00000343508 SPINK7P58062 85 aa2.93□□□□□ -1.94
CSMD3-203ENST00000343508 AKAP13Q12802 2813 aa2.93□□□□□ -1.94
CSMD3-203ENST00000343508 CELSR1Q9NYQ6 3014 aa2.92□□□□□ -1.94
CSMD3-203ENST00000343508 LINC00483Q53H64 154 aa2.92□□□□□ -1.94
CSMD3-203ENST00000343508 NBPF19A0A087WUL8 3843 aa2.91□□□□□ -1.94
CSMD3-203ENST00000343508 NCOR2Q9Y618 2525 aa2.91□□□□□ -1.94
CSMD3-203ENST00000343508 LINC00304Q8N9R0 145 aa2.91□□□□□ -1.94
CSMD3-203ENST00000343508 DMAC1Q96GE9 116 aa2.91□□□□□ -1.94
CSMD3-203ENST00000343508 A6NN06 94 aa2.91□□□□□ -1.94
CSMD3-203ENST00000343508 PLAC8Q9NZF1 115 aa2.91□□□□□ -1.94
CSMD3-203ENST00000343508 CRYBG3Q68DQ2 2970 aa2.9□□□□□ -1.94
CSMD3-203ENST00000343508 USP9YO00507 2555 aaPredicted RBP2.9□□□□□ -1.94
CSMD3-203ENST00000343508 A0A1B0GU33 70 aa2.9□□□□□ -1.95
CSMD3-203ENST00000343508 WWC2-AS2Q96NR7 200 aa2.89□□□□□ -1.95
CSMD3-203ENST00000343508 CSAG1Q6PB30 78 aa2.89□□□□□ -1.95
CSMD3-203ENST00000343508 Q5W150 140 aa2.89□□□□□ -1.95
CSMD3-203ENST00000343508 Q8N1X5 172 aa2.89□□□□□ -1.95
CSMD3-203ENST00000343508 CHD8Q9HCK8 2581 aa2.89□□□□□ -1.95
CSMD3-203ENST00000343508 H3BS24 57 aa2.88□□□□□ -1.95
CSMD3-203ENST00000343508 A0A087X002 238 aa2.88□□□□□ -1.95
CSMD3-203ENST00000343508 MYO18BQ8IUG5 2567 aa2.88□□□□□ -1.95
CSMD3-203ENST00000343508 CHD6Q8TD26 2715 aa2.88□□□□□ -1.95
CSMD3-203ENST00000343508 PRAC1Q96KF2 57 aa2.88□□□□□ -1.95
CSMD3-203ENST00000343508 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP2.88□□□□□ -1.95
CSMD3-203ENST00000343508 SPATA8Q6RVD6 105 aa2.87□□□□□ -1.95
CSMD3-203ENST00000343508 JMJD1CQ15652 2540 aa2.87□□□□□ -1.95
CSMD3-203ENST00000343508 C9orf92A6NGG3 77 aa2.87□□□□□ -1.95
CSMD3-203ENST00000343508 CACNA1AO00555 2505 aa2.87□□□□□ -1.95
CSMD3-203ENST00000343508 SPTBN4Q9H254 2564 aa2.87□□□□□ -1.95
CSMD3-203ENST00000343508 HRNRQ86YZ3 2850 aaPredicted RBP2.86□□□□□ -1.95
CSMD3-203ENST00000343508 POLQO75417 2590 aa2.86□□□□□ -1.95
CSMD3-203ENST00000343508 SETD2Q9BYW2 2564 aaPredicted RBP2.85□□□□□ -1.95
CSMD3-203ENST00000343508 ZNF292O60281 2723 aa2.85□□□□□ -1.95
CSMD3-203ENST00000343508 ZNF462Q96JM2 2506 aa2.85□□□□□ -1.95
CSMD3-203ENST00000343508 PKD1L2Q7Z442 2459 aa2.84□□□□□ -1.95
CSMD3-203ENST00000343508 TEX15Q9BXT5 2789 aa2.84□□□□□ -1.96
CSMD3-203ENST00000343508 KMT2BQ9UMN6 2715 aaPredicted RBP2.84□□□□□ -1.96
CSMD3-203ENST00000343508 KRTAP1-5Q9BYS1 174 aa2.83□□□□□ -1.96
CSMD3-203ENST00000343508 DCHS2Q6V1P9 2916 aa2.83□□□□□ -1.96
CSMD3-203ENST00000343508 KRTAP7-1Q8IUC3 87 aa2.83□□□□□ -1.96
CSMD3-203ENST00000343508 FLNAP21333 2647 aaKnown RBP2.82□□□□□ -1.96
CSMD3-203ENST00000343508 A0A0D9SG42 100 aa2.82□□□□□ -1.96
CSMD3-203ENST00000343508 NOTCH2Q04721 2471 aa2.81□□□□□ -1.96
CSMD3-203ENST00000343508 ROMO1P60602 79 aa2.81□□□□□ -1.96
CSMD3-203ENST00000343508 ACANP16112 2415 aa2.81□□□□□ -1.96
CSMD3-203ENST00000343508 AKAP9Q99996 3911 aa2.8□□□□□ -1.96
CSMD3-203ENST00000343508 A8MU10 97 aa2.8□□□□□ -1.96
CSMD3-203ENST00000343508 MAP1AP78559 2803 aaPredicted RBP2.8□□□□□ -1.96
CSMD3-203ENST00000343508 LUZP6Q538Z0 58 aa2.8□□□□□ -1.96
CSMD3-203ENST00000343508 ZNF469Q96JG9 3925 aaPredicted RBP2.8□□□□□ -1.96
CSMD3-203ENST00000343508 ITPR3Q14573 2671 aa2.8□□□□□ -1.96
CSMD3-203ENST00000343508 ZFYVE26Q68DK2 2539 aa2.8□□□□□ -1.96
CSMD3-203ENST00000343508 MTORP42345 2549 aa2.8□□□□□ -1.96
CSMD3-203ENST00000343508 H1FX-AS1Q4G0G2 97 aa2.79□□□□□ -1.96
CSMD3-203ENST00000343508 KRTAP13-1Q8IUC0 172 aa2.79□□□□□ -1.96
CSMD3-203ENST00000343508 PIEZO1Q92508 2521 aa2.79□□□□□ -1.96
CSMD3-203ENST00000343508 KRTAP25-1Q3LHN0 102 aa2.79□□□□□ -1.96
CSMD3-203ENST00000343508 RPL37P61927 97 aaKnown RBP2.79□□□□□ -1.96
CSMD3-203ENST00000343508 GCN1Q92616 2671 aaKnown RBP2.79□□□□□ -1.96
CSMD3-203ENST00000343508 NOTCH2NLQ7Z3S9 236 aa2.78□□□□□ -1.96
CSMD3-203ENST00000343508 KRTAP11-1Q8IUC1 163 aa2.78□□□□□ -1.96
CSMD3-203ENST00000343508 UTP20O75691 2785 aaKnown RBP2.78□□□□□ -1.96
CSMD3-203ENST00000343508 EPG5Q9HCE0 2579 aa2.78□□□□□ -1.96
CSMD3-203ENST00000343508 PANO1I0J062 215 aa2.77□□□□□ -1.97
CSMD3-203ENST00000343508 S4R3F8 94 aa2.77□□□□□ -1.97
CSMD3-203ENST00000343508 RPS29P62273 56 aaKnown RBP2.77□□□□□ -1.97
CSMD3-203ENST00000343508 F8P00451 2351 aa2.76□□□□□ -1.97
CSMD3-203ENST00000343508 SMR3BP02814 79 aaPredicted RBP2.76□□□□□ -1.97
CSMD3-203ENST00000343508 APCP25054 2843 aa2.75□□□□□ -1.97
CSMD3-203ENST00000343508 COX6B2Q6YFQ2 88 aa2.74□□□□□ -1.97
CSMD3-203ENST00000343508 ADM2Q7Z4H4 148 aa2.74□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms