RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 GIG44P09565 113 aaPredicted RBP11.06□□□□□ -0.64
SMAD4-201ENST00000342988 KRTAP10-11P60412 298 aa11.06□□□□□ -0.64
SMAD4-201ENST00000342988 M0QZ58 72 aa11.05□□□□□ -0.64
SMAD4-201ENST00000342988 KLK9Q2XQG4 91 aa11.05□□□□□ -0.64
SMAD4-201ENST00000342988 TEX15Q9BXT5 2789 aa11.04□□□□□ -0.64
SMAD4-201ENST00000342988 EIF4EBP3O60516 100 aaPredicted RBP11.02□□□□□ -0.65
SMAD4-201ENST00000342988 SRCAPQ6ZRS2 3230 aa11□□□□□ -0.65
SMAD4-201ENST00000342988 Q5W150 140 aa10.96□□□□□ -0.65
SMAD4-201ENST00000342988 FLNBO75369 2602 aaKnown RBP10.96□□□□□ -0.65
SMAD4-201ENST00000342988 Q5XG85 94 aa10.95□□□□□ -0.66
SMAD4-201ENST00000342988 C20orf166-AS1Q96NR2 134 aa10.95□□□□□ -0.66
SMAD4-201ENST00000342988 HELZ2Q9BYK8 2649 aaKnown RBP10.92□□□□□ -0.66
SMAD4-201ENST00000342988 MMP24-AS1A0A0U1RRL7 71 aa10.9□□□□□ -0.66
SMAD4-201ENST00000342988 FP248Q71RG6 208 aaPredicted RBP10.87□□□□□ -0.67
SMAD4-201ENST00000342988 GCN1Q92616 2671 aaKnown RBP10.86□□□□□ -0.67
SMAD4-201ENST00000342988 TEP1Q99973 2627 aaKnown RBP10.86□□□□□ -0.67
SMAD4-201ENST00000342988 ADM2Q7Z4H4 148 aa10.84□□□□□ -0.67
SMAD4-201ENST00000342988 CEP350Q5VT06 3117 aa10.84□□□□□ -0.67
SMAD4-201ENST00000342988 NSD1Q96L73 2696 aaPredicted RBP10.81□□□□□ -0.68
SMAD4-201ENST00000342988 SPATA8Q6RVD6 105 aa10.8□□□□□ -0.68
SMAD4-201ENST00000342988 Q8NDZ9 215 aa10.78□□□□□ -0.68
SMAD4-201ENST00000342988 APCP25054 2843 aa10.77□□□□□ -0.68
SMAD4-201ENST00000342988 PLAC8Q9NZF1 115 aa10.76□□□□□ -0.69
SMAD4-201ENST00000342988 CASC10Q5T4H9 136 aa10.76□□□□□ -0.69
SMAD4-201ENST00000342988 LINC00472Q9H8W2 130 aa10.72□□□□□ -0.69
SMAD4-201ENST00000342988 ITPR2Q14571 2701 aa10.71□□□□□ -0.7
SMAD4-201ENST00000342988 PANO1I0J062 215 aa10.7□□□□□ -0.7
SMAD4-201ENST00000342988 KRTAP25-1Q3LHN0 102 aa10.68□□□□□ -0.7
SMAD4-201ENST00000342988 OXTP01178 125 aa10.67□□□□□ -0.7
SMAD4-201ENST00000342988 IGSF10Q6WRI0 2623 aa10.63□□□□□ -0.71
SMAD4-201ENST00000342988 Q6ZR54 194 aa10.63□□□□□ -0.71
SMAD4-201ENST00000342988 Q5VSD8 79 aa10.62□□□□□ -0.71
SMAD4-201ENST00000342988 PCNTO95613 3336 aa10.62□□□□□ -0.71
SMAD4-201ENST00000342988 NDUFAF8A1L188 74 aa10.6□□□□□ -0.71
SMAD4-201ENST00000342988 SPRR1AP35321 89 aa10.58□□□□□ -0.72
SMAD4-201ENST00000342988 SETXQ7Z333 2677 aaKnown RBP10.57□□□□□ -0.72
SMAD4-201ENST00000342988 SPRR1BP22528 89 aa10.55□□□□□ -0.72
SMAD4-201ENST00000342988 UTP20O75691 2785 aaKnown RBP10.55□□□□□ -0.72
SMAD4-201ENST00000342988 A0A096LNT2 108 aa10.53□□□□□ -0.72
SMAD4-201ENST00000342988 KRTAP10-3P60369 221 aa10.52□□□□□ -0.73
SMAD4-201ENST00000342988 C5orf42Q9H799 3197 aa10.5□□□□□ -0.73
SMAD4-201ENST00000342988 TNP1P09430 55 aa10.49□□□□□ -0.73
SMAD4-201ENST00000342988 A8MUU9 505 aa10.49□□□□□ -0.73
SMAD4-201ENST00000342988 KRTAP26-1Q6PEX3 210 aa10.47□□□□□ -0.73
SMAD4-201ENST00000342988 C10orf95Q9H7T3 257 aa10.47□□□□□ -0.73
SMAD4-201ENST00000342988 CYSTM1Q9H1C7 97 aa10.47□□□□□ -0.73
SMAD4-201ENST00000342988 EP400Q96L91 3159 aa10.45□□□□□ -0.74
SMAD4-201ENST00000342988 CFAP54Q96N23 3096 aa10.44□□□□□ -0.74
SMAD4-201ENST00000342988 DNAH12Q6ZR08 3092 aa10.42□□□□□ -0.74
SMAD4-201ENST00000342988 ZNF292O60281 2723 aa10.39□□□□□ -0.75
SMAD4-201ENST00000342988 PP632Q6XCG6 107 aa10.38□□□□□ -0.75
SMAD4-201ENST00000342988 A6NN06 94 aa10.33□□□□□ -0.76
SMAD4-201ENST00000342988 A0A0C4DFX4 3053 aa10.33□□□□□ -0.76
SMAD4-201ENST00000342988 MAP1AP78559 2803 aaPredicted RBP10.31□□□□□ -0.76
SMAD4-201ENST00000342988 A0A087X002 238 aa10.3□□□□□ -0.76
SMAD4-201ENST00000342988 UBR5O95071 2799 aaPredicted RBP10.3□□□□□ -0.76
SMAD4-201ENST00000342988 RPS29P62273 56 aaKnown RBP10.28□□□□□ -0.76
SMAD4-201ENST00000342988 LAMA2P24043 3122 aaKnown RBP10.27□□□□□ -0.77
SMAD4-201ENST00000342988 P0C880 135 aa10.26□□□□□ -0.77
SMAD4-201ENST00000342988 NBEAL2Q6ZNJ1 2754 aa10.21□□□□□ -0.77
SMAD4-201ENST00000342988 ITPR1Q14643 2758 aa10.2□□□□□ -0.78
SMAD4-201ENST00000342988 GOLGB1Q14789 3259 aaKnown RBP10.18□□□□□ -0.78
SMAD4-201ENST00000342988 UTRNP46939 3433 aa10.16□□□□□ -0.78
SMAD4-201ENST00000342988 DSPP15924 2871 aaKnown RBP10.16□□□□□ -0.78
SMAD4-201ENST00000342988 A8MU10 97 aa10.14□□□□□ -0.79
SMAD4-201ENST00000342988 KRTAP29-1A8MX34 341 aaPredicted RBP10.12□□□□□ -0.79
SMAD4-201ENST00000342988 TRANK1O15050 2925 aa10.09□□□□□ -0.79
SMAD4-201ENST00000342988 LCE6AA0A183 80 aa10.07□□□□□ -0.8
SMAD4-201ENST00000342988 KRTAP10-1P60331 282 aa10.07□□□□□ -0.8
SMAD4-201ENST00000342988 KRTAP11-1Q8IUC1 163 aa10.04□□□□□ -0.8
SMAD4-201ENST00000342988 KRTAP1-3Q8IUG1 177 aa10.03□□□□□ -0.8
SMAD4-201ENST00000342988 LRBAP50851 2863 aa10.01□□□□□ -0.81
SMAD4-201ENST00000342988 REV3LO60673 3130 aa9.99□□□□□ -0.81
SMAD4-201ENST00000342988 KRTAP1-1Q07627 177 aa9.96□□□□□ -0.81
SMAD4-201ENST00000342988 PRO2289Q9P1D8 64 aa9.96□□□□□ -0.81
SMAD4-201ENST00000342988 KRTAP4-16G5E9R7 235 aaPredicted RBP9.96□□□□□ -0.82
SMAD4-201ENST00000342988 NOTCH2NLQ7Z3S9 236 aa9.96□□□□□ -0.82
SMAD4-201ENST00000342988 KRTAP10-2P60368 255 aa9.95□□□□□ -0.82
SMAD4-201ENST00000342988 FRYLO94915 3013 aa9.95□□□□□ -0.82
SMAD4-201ENST00000342988 TENM3Q9P273 2699 aa9.94□□□□□ -0.82
SMAD4-201ENST00000342988 CHD9Q3L8U1 2897 aa9.91□□□□□ -0.82
SMAD4-201ENST00000342988 TRIOO75962 3097 aa9.91□□□□□ -0.82
SMAD4-201ENST00000342988 KRTAP1-5Q9BYS1 174 aa9.9□□□□□ -0.82
SMAD4-201ENST00000342988 KRTAP10-8P60410 259 aa9.9□□□□□ -0.82
SMAD4-201ENST00000342988 WDFY4Q6ZS81 3184 aa9.85□□□□□ -0.83
SMAD4-201ENST00000342988 FRYQ5TBA9 3013 aa9.83□□□□□ -0.84
SMAD4-201ENST00000342988 TENM1Q9UKZ4 2725 aa9.81□□□□□ -0.84
SMAD4-201ENST00000342988 Q6ZRN7 208 aaPredicted RBP9.78□□□□□ -0.84
SMAD4-201ENST00000342988 KALRNO60229 2985 aa9.77□□□□□ -0.84
SMAD4-201ENST00000342988 CRYBG3Q68DQ2 2970 aa9.77□□□□□ -0.84
SMAD4-201ENST00000342988 MGAQ8IWI9 3026 aa9.77□□□□□ -0.85
SMAD4-201ENST00000342988 FREM2Q5SZK8 3169 aa9.75□□□□□ -0.85
SMAD4-201ENST00000342988 ASH1LQ9NR48 2969 aaKnown RBP9.72□□□□□ -0.85
SMAD4-201ENST00000342988 COL12A1Q99715 3063 aa9.69□□□□□ -0.86
SMAD4-201ENST00000342988 CHD7Q9P2D1 2997 aa9.69□□□□□ -0.86
SMAD4-201ENST00000342988 VPS13AQ96RL7 3174 aa9.67□□□□□ -0.86
SMAD4-201ENST00000342988 NF1P21359 2839 aa9.66□□□□□ -0.86
SMAD4-201ENST00000342988 XIRP2A4UGR9 3374 aa9.65□□□□□ -0.86
SMAD4-201ENST00000342988 RANBP2P49792 3224 aaKnown RBP9.57□□□□□ -0.88
SMAD4-201ENST00000342988 TGP01266 2768 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms