RNA–Protein interactions for RNA: ENST00000318787.13

HDDC2-201, Transcript of HD domain containing 2, humanhuman

TSL 1 (best)

Gene HDDC2, Length 1,350 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC2-201ENST00000318787 PRO1933Q9H354 126 aa9.01□□□□□ -0.97
HDDC2-201ENST00000318787 H7C2G1 150 aa9□□□□□ -0.97
HDDC2-201ENST00000318787 A0A0U1RQV1 116 aa8.99□□□□□ -0.97
HDDC2-201ENST00000318787 VAMP8Q9BV40 100 aa8.99□□□□□ -0.97
HDDC2-201ENST00000318787 KRTAP9-9Q9BYP9 154 aa8.99□□□□□ -0.97
HDDC2-201ENST00000318787 KRTAP9-4Q9BYQ2 154 aa8.99□□□□□ -0.97
HDDC2-201ENST00000318787 IGLV5-48A0A075B6I7 105 aa8.99□□□□□ -0.97
HDDC2-201ENST00000318787 A0A0G2JQZ4 141 aa8.99□□□□□ -0.97
HDDC2-201ENST00000318787 LINC01547P58512 204 aaPredicted RBP8.99□□□□□ -0.97
HDDC2-201ENST00000318787 SMIM29Q86T20 159 aa8.99□□□□□ -0.97
HDDC2-201ENST00000318787 LINC00575Q6W349 94 aa8.97□□□□□ -0.97
HDDC2-201ENST00000318787 MUC17Q685J3 4493 aa8.96□□□□□ -0.97
HDDC2-201ENST00000318787 hADV29S1A0JD25 119 aa8.96□□□□□ -0.98
HDDC2-201ENST00000318787 F8WEM9 126 aa8.96□□□□□ -0.98
HDDC2-201ENST00000318787 DLEU1O43261 78 aa8.96□□□□□ -0.98
HDDC2-201ENST00000318787 Q6ZQY7 126 aa8.96□□□□□ -0.98
HDDC2-201ENST00000318787 RAB37Q96AX2 223 aa8.96□□□□□ -0.98
HDDC2-201ENST00000318787 BVES-AS1Q5T3Y7 98 aa8.93□□□□□ -0.98
HDDC2-201ENST00000318787 CD164Q04900 197 aa8.92□□□□□ -0.98
HDDC2-201ENST00000318787 TMA7Q9Y2S6 64 aaKnown RBP8.91□□□□□ -0.98
HDDC2-201ENST00000318787 FAT4Q6V0I7 4981 aa8.91□□□□□ -0.98
HDDC2-201ENST00000318787 C9orf92A6NGG3 77 aa8.9□□□□□ -0.98
HDDC2-201ENST00000318787 CFC1BP0CG36 223 aa8.9□□□□□ -0.98
HDDC2-201ENST00000318787 CFC1P0CG37 223 aa8.9□□□□□ -0.98
HDDC2-201ENST00000318787 HIGD1BQ9P298 99 aa8.9□□□□□ -0.98
HDDC2-201ENST00000318787 C2orf91Q6ZV80 131 aa8.89□□□□□ -0.99
HDDC2-201ENST00000318787 SEC61BP60468 96 aaKnown RBP8.88□□□□□ -0.99
HDDC2-201ENST00000318787 KRTAP4-8A0A0G2JLE6 195 aa8.87□□□□□ -0.99
HDDC2-201ENST00000318787 ASB16-AS1Q495Z4 193 aa8.86□□□□□ -0.99
HDDC2-201ENST00000318787 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.86□□□□□ -0.99
HDDC2-201ENST00000318787 A0A0B4J2C4 111 aa8.86□□□□□ -0.99
HDDC2-201ENST00000318787 CEND1Q8N111 149 aa8.86□□□□□ -0.99
HDDC2-201ENST00000318787 SNHG12Q9BXW3 62 aa8.85□□□□□ -0.99
HDDC2-201ENST00000318787 SNCGO76070 127 aa8.84□□□□□ -0.99
HDDC2-201ENST00000318787 TCL1BO95988 128 aa8.83□□□□□ -1
HDDC2-201ENST00000318787 PYY3Q5JQD4 70 aa8.83□□□□□ -1
HDDC2-201ENST00000318787 C1orf195Q5TG92 126 aa8.83□□□□□ -1
HDDC2-201ENST00000318787 FXYD2P54710 66 aa8.82□□□□□ -1
HDDC2-201ENST00000318787 Q6JHZ5 121 aa8.82□□□□□ -1
HDDC2-201ENST00000318787 IGFL1Q6UW32 110 aa8.82□□□□□ -1
HDDC2-201ENST00000318787 CLEC2BQ92478 149 aa8.82□□□□□ -1
HDDC2-201ENST00000318787 H3BUT2 72 aa8.81□□□□□ -1
HDDC2-201ENST00000318787 OCIAD2Q56VL3 154 aa8.81□□□□□ -1
HDDC2-201ENST00000318787 PRO1854Q9UHT4 67 aa8.81□□□□□ -1
HDDC2-201ENST00000318787 H0YGX0 51 aa8.8□□□□□ -1
HDDC2-201ENST00000318787 Q5XG85 94 aa8.8□□□□□ -1
HDDC2-201ENST00000318787 FAM218AQ96MZ4 157 aa8.8□□□□□ -1
HDDC2-201ENST00000318787 PPDPFLQ8WWR9 84 aa8.79□□□□□ -1
HDDC2-201ENST00000318787 KRTAP4-1Q9BYQ7 146 aa8.78□□□□□ -1
HDDC2-201ENST00000318787 IGLV8-61A0A075B6I0 122 aa8.76□□□□□ -1.01
HDDC2-201ENST00000318787 TRBV7-7A0A0K0K1E9 115 aa8.76□□□□□ -1.01
HDDC2-201ENST00000318787 HSD52Q0P140 79 aa8.75□□□□□ -1.01
HDDC2-201ENST00000318787 PCOTHQ58A44 107 aa8.75□□□□□ -1.01
HDDC2-201ENST00000318787 K7ERJ3 54 aa8.74□□□□□ -1.01
HDDC2-201ENST00000318787 TRIAP1O43715 76 aa8.74□□□□□ -1.01
HDDC2-201ENST00000318787 FABP2P12104 132 aa8.74□□□□□ -1.01
HDDC2-201ENST00000318787 PSMB2P49721 201 aa8.74□□□□□ -1.01
HDDC2-201ENST00000318787 H3BS24 57 aa8.73□□□□□ -1.01
HDDC2-201ENST00000318787 NDUFV3P56181 108 aaKnown RBP8.73□□□□□ -1.01
HDDC2-201ENST00000318787 UQCR10Q9UDW1 63 aa8.72□□□□□ -1.01
HDDC2-201ENST00000318787 A0A1B0GV72 72 aa8.7□□□□□ -1.02
HDDC2-201ENST00000318787 DNAL4O96015 105 aa8.7□□□□□ -1.02
HDDC2-201ENST00000318787 A0A1B0GX51 115 aa8.69□□□□□ -1.02
HDDC2-201ENST00000318787 H3BMG7 143 aa8.69□□□□□ -1.02
HDDC2-201ENST00000318787 LST1O00453 97 aa8.68□□□□□ -1.02
HDDC2-201ENST00000318787 COX6CP09669 75 aa8.67□□□□□ -1.02
HDDC2-201ENST00000318787 SS18L2Q9UHA2 77 aa8.65□□□□□ -1.02
HDDC2-201ENST00000318787 RPL37P61927 97 aaKnown RBP8.64□□□□□ -1.03
HDDC2-201ENST00000318787 TEN1Q86WV5 123 aa8.64□□□□□ -1.03
HDDC2-201ENST00000318787 ORMDL1Q9P0S3 153 aa8.64□□□□□ -1.03
HDDC2-201ENST00000318787 A0A087WSZ3 146 aa8.63□□□□□ -1.03
HDDC2-201ENST00000318787 OBSCN-AS1Q96MR7 158 aa8.63□□□□□ -1.03
HDDC2-201ENST00000318787 SCGB1C2P0DMR2 95 aa8.61□□□□□ -1.03
HDDC2-201ENST00000318787 Q6Q795 121 aa8.61□□□□□ -1.03
HDDC2-201ENST00000318787 LCE1DQ5T752 114 aa8.6□□□□□ -1.03
HDDC2-201ENST00000318787 ANKRD29Q8N6D5 301 aa8.59□□□□□ -1.03
HDDC2-201ENST00000318787 KRTAP19-4Q3LI73 84 aa8.58□□□□□ -1.04
HDDC2-201ENST00000318787 TMEM256-PLSCR3K7ERE1 68 aa8.57□□□□□ -1.04
HDDC2-201ENST00000318787 KRTAP4-7Q9BYR0 210 aa8.57□□□□□ -1.04
HDDC2-201ENST00000318787 A0A1W2PNM2 257 aa8.56□□□□□ -1.04
HDDC2-201ENST00000318787 Q96NJ1 140 aa8.56□□□□□ -1.04
HDDC2-201ENST00000318787 H3BQ85 93 aa8.55□□□□□ -1.04
HDDC2-201ENST00000318787 SIGMAR1Q99720 223 aa8.55□□□□□ -1.04
HDDC2-201ENST00000318787 ATP11AUNQ6ZP68 121 aa8.52□□□□□ -1.05
HDDC2-201ENST00000318787 VPS25Q9BRG1 176 aa8.52□□□□□ -1.05
HDDC2-201ENST00000318787 TRACP01848 142 aa8.51□□□□□ -1.05
HDDC2-201ENST00000318787 CCKP06307 115 aa8.51□□□□□ -1.05
HDDC2-201ENST00000318787 M0R143 59 aa8.5□□□□□ -1.05
HDDC2-201ENST00000318787 NAA38Q9BRA0 125 aaKnown RBP8.5□□□□□ -1.05
HDDC2-201ENST00000318787 TRBV7-4A0A0J9YYF1 115 aa8.49□□□□□ -1.05
HDDC2-201ENST00000318787 DSCR10P59022 87 aa8.49□□□□□ -1.05
HDDC2-201ENST00000318787 UBE2V1Q13404 147 aa8.49□□□□□ -1.05
HDDC2-201ENST00000318787 COX6B2Q6YFQ2 88 aa8.49□□□□□ -1.05
HDDC2-201ENST00000318787 Q75L30 129 aa8.49□□□□□ -1.05
HDDC2-201ENST00000318787 IGKV4-1P06312 121 aa8.48□□□□□ -1.05
HDDC2-201ENST00000318787 SMIM6P0DI80 62 aa8.48□□□□□ -1.05
HDDC2-201ENST00000318787 DEFB116Q30KQ4 102 aa8.48□□□□□ -1.05
HDDC2-201ENST00000318787 KRTAP19-2Q3LHN2 52 aa8.48□□□□□ -1.05
HDDC2-201ENST00000318787 BAALC-AS2P0C853 105 aa8.46□□□□□ -1.06
HDDC2-201ENST00000318787 RBM3P98179 157 aaKnown RBP8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 143.5 ms